prot_F-serratus_M_contig88.20143.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_F-serratus_M_contig88.20143.1
Unique Name	prot_F-serratus_M_contig88.20143.1
Type	polypeptide
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length	267

Homology

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BLAST of mRNA_F-serratus_M_contig88.20143.1 vs. uniprot
Match: A0A6H5JT74_9PHAE (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JT74_9PHAE)

HSP 1 Score: 186 bits (472), Expect = 1.170e-54
Identity = 107/197 (54.31%), Postives = 135/197 (68.53%), Query Frame = 0

Query:    4 RRRSVLSIPFAIF-VASCAMIEGFHFVAPVSNSMLNERQATQRGCGTSAKGQGKHVHQRVVTITMR-GLHKKGKNGPGLTGVQRVINTRERVGAVEDPCKVMISNLDYSLTEDDVKAFCSAAGPVASVKLVKRRYARTSRGFGFVEFNQPLTATIAIEDLSGKEFHGRVVELKPAILPQEKQRSEAKREWQERLALE 198
            RRRS   +  A+   A    ++GF FV  ++ S         R  G +A+ Q     Q+   +TMR GL  KGKNGPGLT + RV+ TR+RV   E+PCKVMISNLDYSLTE+DV  FCS AG VA VKLVK+ YA+TS+G+GFV+F+QPLTATIAIE L+GKE  GRVVELKPAI  +EK+R +A R+W++R   E
Sbjct:    5 RRRSFAIMASALCGAAGLTRVQGFCFVPALTGS-------NTRCHGATAERQATQQAQQGGGLTMRRGLSYKGKNGPGLTNIGRVVTTRKRVLESEEPCKVMISNLDYSLTENDVAEFCSTAGAVAGVKLVKKWYAKTSKGYGFVDFDQPLTATIAIETLNGKELKGRVVELKPAITSREKRRKQALRDWEQRCLEE 194

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BLAST of mRNA_F-serratus_M_contig88.20143.1 vs. uniprot
Match: A0A8J2SD52_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SD52_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 9.410e-17
Identity = 47/108 (43.52%), Postives = 65/108 (60.19%), Query Frame = 0

Query:   97 EDPCKVMISNLDYSLTEDDVKAFCSAAGPVASVKLVKRRYARTSRGFGFVEFNQPLTATIAIEDLSGKEFHGRVVELKPAILPQEKQRSEAKREWQERLALERESPIA 204
            E P KV  +N+ Y  TEDD++ F SA GPV +V+LV+  Y   S+G+GFV F+ PL AT AI  L GK F GR + L  A    ++++ +A RE  ER    R++  A
Sbjct:   67 EVPNKVFFANIKYDATEDDLRPFFSAVGPVTNVQLVRDSYTGQSKGYGFVTFSSPLAATTAIRSLHGKPFKGREIRLDDATSLSKRRKEKAAREGFERREARRQAEKA 174

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BLAST of mRNA_F-serratus_M_contig88.20143.1 vs. uniprot
Match: W7TTT9_9STRA (Rnp-1 like rna-binding protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TTT9_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.280e-14
Identity = 38/93 (40.86%), Postives = 63/93 (67.74%), Query Frame = 0

Query:   86 VINT-RERVGAVEDPCKVMISNLDYSLTEDDVKAFCSAAGPVASVKLVKRRYARTSRGFGFVEFNQPLTATIAIEDLSGKEFHGRVVELKPAI 177
            +IN+ RE +    +P ++M+SNL +  + ++++AF S AG V +VK++  R    S+G+GFV F +PL+AT A+E L G E  GR ++++PAI
Sbjct:   51 IINSMRENIEGEPNPTQIMVSNLPFDTSTEELEAFASQAGQVVNVKIILDRETGRSKGYGFVLFTEPLSATYALERLDGMELGGRPLKIRPAI 143

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BLAST of mRNA_F-serratus_M_contig88.20143.1 vs. uniprot
Match: I4AKB7_BERLS (RRM domain-containing RNA-binding protein n=3 Tax=Cytophagales TaxID=768507 RepID=I4AKB7_BERLS)

HSP 1 Score: 66.2 bits (160), Expect = 1.940e-10
Identity = 33/74 (44.59%), Postives = 47/74 (63.51%), Query Frame = 0

Query:  104 ISNLDYSLTEDDVKAFCSAAGPVASVKLVKRRYARTSRGFGFVEFNQPLTATIAIEDLSGKEFHGRVVELKPAI 177
            +SNL YS++E++++A  S  G V S K++  R  R SRGFGFVE         AIE+L+G E  GR +++K AI
Sbjct:    5 VSNLPYSISEEELEAVFSELGVVTSTKIITDRETRRSRGFGFVEMESEEDGEAAIEELNGVELKGREIQVKKAI 78

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BLAST of mRNA_F-serratus_M_contig88.20143.1 vs. uniprot
Match: E9H8S8_DAPPU (RRM domain-containing protein n=3 Tax=Daphnia TaxID=6668 RepID=E9H8S8_DAPPU)

HSP 1 Score: 65.5 bits (158), Expect = 2.490e-10
Identity = 31/68 (45.59%), Postives = 44/68 (64.71%), Query Frame = 0

Query:  102 VMISNLDYSLTEDDVKAFCSAAGPVASVKLVKRRYARTSRGFGFVEFNQPLTATIAIEDLSGKEFHGR 169
            V + N+ Y ++ED +KA  S AGPV S ++V+ R    SRGFGF EF  P +A  A+ +L+G E +GR
Sbjct:    4 VFVGNIPYGVSEDQLKAIFSEAGPVVSFRIVQDRETGRSRGFGFCEFQSPDSAQTAMRNLNGYELNGR 71

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BLAST of mRNA_F-serratus_M_contig88.20143.1 vs. uniprot
Match: A0A359D2T2_9BACT (RNA-binding protein n=2 Tax=Bacteroidetes TaxID=976 RepID=A0A359D2T2_9BACT)

HSP 1 Score: 63.9 bits (154), Expect = 1.020e-9
Identity = 29/75 (38.67%), Postives = 49/75 (65.33%), Query Frame = 0

Query:  102 VMISNLDYSLTEDDVKAFCSAAGPVASVKLVKRRYARTSRGFGFVEFNQPLTATIAIEDLSGKEFHGRVVELKPA 176
            + I N+ Y L EDD++A  +  G ++SVK++K +  + S+G+GF+E +    A  AIE ++GKEF GR +++  A
Sbjct:    4 IYIGNVSYKLREDDLQAAFAEFGTISSVKIIKDKVTKKSKGYGFIEMDNEEEAERAIEAMNGKEFQGRALKVHKA 78

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BLAST of mRNA_F-serratus_M_contig88.20143.1 vs. uniprot
Match: UPI00168AE54E (RNA-binding protein n=1 Tax=Treponema zioleckii TaxID=331680 RepID=UPI00168AE54E)

HSP 1 Score: 64.3 bits (155), Expect = 1.750e-9
Identity = 31/77 (40.26%), Postives = 46/77 (59.74%), Query Frame = 0

Query:  101 KVMISNLDYSLTEDDVKAFCSAAGPVASVKLVKRRYARTSRGFGFVEFNQPLTATIAIEDLSGKEFHGRVVELKPAI 177
            K+ I NL +S TE+ + +     G VAS  ++K ++   S+GFGFVE    ++AT AI  L+GKE  GR V +  A+
Sbjct:    3 KIYIGNLSFSTTEERLSSIFGEYGEVASATIIKDKFTEMSKGFGFVEMPDDVSATSAISSLNGKEIDGRKVRVNEAV 79

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BLAST of mRNA_F-serratus_M_contig88.20143.1 vs. uniprot
Match: A0A7S2V4S3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4S3_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.890e-9
Identity = 47/161 (29.19%), Postives = 81/161 (50.31%), Query Frame = 0

Query:   28 FVAPVSNSMLNERQATQRGCGTSAKGQGKHVHQRVVTITMRGLHKKGKNGPGLTGVQRVINTRERVGAVEDPCKVMISNLDYSLTEDDVKAFCSAAGPVASVKLVKRRYARTSRGFGFVEFNQPLTATIAIEDLSGKEFHGRVVELKPA---ILPQEKQRS 185
            FVA   ++ + +    QR   T     G  V+ R+          +G++     G    I    R   V + CKV +SN  Y+ TE++++ +CS AG V +VK++K ++ + S+G+G+VE+     AT AI  L+  +  GR V +  A   + P++ +RS
Sbjct:   19 FVAAFLSNKVGQISTLQRQLSTYEPKHG--VYMRIS---------RGRSRNPNAGQPLAIEDYLRRKNVFNACKVHVSNFPYTTTEEELREWCSQAGEVFAVKIIKNQWTKKSQGYGYVEYTISPYATAAINFLNETQLGGRTVYIAEAEEHLKPEKPKRS 168

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BLAST of mRNA_F-serratus_M_contig88.20143.1 vs. uniprot
Match: A0A1F9YA88_9BACT (RNA-binding protein n=1 Tax=Elusimicrobia bacterium RIFOXYB2_FULL_49_7 TaxID=1797968 RepID=A0A1F9YA88_9BACT)

HSP 1 Score: 64.3 bits (155), Expect = 2.100e-9
Identity = 29/66 (43.94%), Postives = 43/66 (65.15%), Query Frame = 0

Query:  104 ISNLDYSLTEDDVKAFCSAAGPVASVKLVKRRYARTSRGFGFVEFNQPLTATIAIEDLSGKEFHGR 169
            + NL   +T+ D+K   SA G V+S +++K ++ R SRGFGFVE +    A  AI  L+GK+FHG+
Sbjct:    5 VGNLSQEVTDQDLKEAFSAFGEVSSCQVIKDKFTRESRGFGFVEMSDKTAADTAINSLNGKDFHGK 70

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BLAST of mRNA_F-serratus_M_contig88.20143.1 vs. uniprot
Match: A0A7S4MXL5_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MXL5_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 2.530e-9
Identity = 63/203 (31.03%), Postives = 93/203 (45.81%), Query Frame = 0

Query:   43 TQRGCGTSAKGQGKHVHQRVVTITMRGLHKKGKNGP------GLTGVQRVINTRERVGAVE--DPCKVMISNLDYSLTEDDVKAFCSA-AGP------VASVKLVKRRYARTSRGFGFVEFNQPLTATIAIEDLSGKEFHGRVVELKPAILPQEKQRSEAKREWQERLALERESPIADDRDEASVAEGVEVEKGDGVESDADE 230
            ++R CG  A      V     T+TM+    K +  P       +T   RV  +  RVG     DP K  + NL +   EDDV    S   GP      V SVK+V+      S+G+GFV+F  P+ AT A+E L+GKEF GR +        Q ++R +  R W     ++R    A+  D         +++ +GV+SD +E
Sbjct:   63 SRRMCGEGAA----EVSSASNTLTMKVSRGKSRKTPRKSSSISVTHASRV-RSAGRVGTKRYVDPAKCFVGNLSFETDEDDVMDLLSDYLGPRVADMNVESVKIVRDWRTGRSKGYGFVQFLDPMMATSAMEGLNGKEFMGRRINF-----GQGQRRKDPDRIW-----IKRRERTAEAGDAEDAILDAALDEAEGVDSDTEE 250

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig88.20143.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig88.20143.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JT74_9PHAE	1.170e-54	54.31	RRM domain-containing protein n=2 Tax=Ectocarpus T...	[more]
A0A8J2SD52_9STRA	9.410e-17	43.52	Hypothetical protein n=1 Tax=Pelagomonas calceolat...	[more]
W7TTT9_9STRA	1.280e-14	40.86	Rnp-1 like rna-binding protein n=2 Tax=Monodopsida...	[more]
I4AKB7_BERLS	1.940e-10	44.59	RRM domain-containing RNA-binding protein n=3 Tax=...	[more]
E9H8S8_DAPPU	2.490e-10	45.59	RRM domain-containing protein n=3 Tax=Daphnia TaxI...	[more]
A0A359D2T2_9BACT	1.020e-9	38.67	RNA-binding protein n=2 Tax=Bacteroidetes TaxID=97...	[more]
UPI00168AE54E	1.750e-9	40.26	RNA-binding protein n=1 Tax=Treponema zioleckii Ta...	[more]
A0A7S2V4S3_9STRA	1.890e-9	29.19	Hypothetical protein n=1 Tax=Fibrocapsa japonica T...	[more]
A0A1F9YA88_9BACT	2.100e-9	43.94	RNA-binding protein n=1 Tax=Elusimicrobia bacteriu...	[more]
A0A7S4MXL5_9STRA	2.530e-9	31.03	Hypothetical protein n=1 Tax=Odontella aurita TaxI...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 101..174 e-value: 1.6E-18 score: 77.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 102..171 e-value: 1.4E-16 score: 60.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 100..178 score: 15.426
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 71..191 e-value: 1.5E-22 score: 82.3
None	No IPR available	PANTHER	PTHR45735:SF2	CLEAVAGE STIMULATION FACTOR, 3' PRE-RNA, SUBUNIT 2	coord: 101..248
None	No IPR available	PANTHER	PTHR45735	FAMILY NOT NAMED	coord: 101..248
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 21..25
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 8..20
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..25
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 26..266
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..7
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..20 score: 7.0
None	No IPR available	TMHMM	TMhelix		coord: 7..29
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 97..180

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig88	contig	F-serratus_M_contig88:66257..79000 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Fucus serratus MALE	2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-16
OGS1.0 of Fucus serratus male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig88.20143.1	mRNA_F-serratus_M_contig88.20143.1	Fucus serratus male	mRNA	F-serratus_M_contig88 66172..80258 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_F-serratus_M_contig88.20143.1 ID=prot_F-serratus_M_contig88.20143.1|Name=mRNA_F-serratus_M_contig88.20143.1|organism=Fucus serratus male|type=polypeptide|length=267bp
MATRRRSVLSIPFAIFVASCAMIEGFHFVAPVSNSMLNERQATQRGCGTS
AKGQGKHVHQRVVTITMRGLHKKGKNGPGLTGVQRVINTRERVGAVEDPC
KVMISNLDYSLTEDDVKAFCSAAGPVASVKLVKRRYARTSRGFGFVEFNQ
PLTATIAIEDLSGKEFHGRVVELKPAILPQEKQRSEAKREWQERLALERE
SPIADDRDEASVAEGVEVEKGDGVESDADEARQSKSTSMPSAEMFLEMVG
RRVKPKPPVPTNPESE*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf