mRNA_F-serratus_M_contig88.20173.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig88.20173.1
Unique NamemRNA_F-serratus_M_contig88.20173.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig88.20173.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig88contigF-serratus_M_contig88:645127..645447 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size323
Cds size321
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932560.3765192-CDS-F-serratus_M_contig88:645126..6454471622932560.3765192-CDS-F-serratus_M_contig88:645126..645447Fucus serratus maleCDSF-serratus_M_contig88 645127..645447 +
1690964365.9219692-CDS-F-serratus_M_contig88:645126..6454471690964365.9219692-CDS-F-serratus_M_contig88:645126..645447Fucus serratus maleCDSF-serratus_M_contig88 645127..645447 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig88.20173.1prot_F-serratus_M_contig88.20173.1Fucus serratus malepolypeptideF-serratus_M_contig88 645127..645447 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig88.20173.1

>prot_F-serratus_M_contig88.20173.1 ID=prot_F-serratus_M_contig88.20173.1|Name=mRNA_F-serratus_M_contig88.20173.1|organism=Fucus serratus male|type=polypeptide|length=107bp
MATASCSGEGEWGAAVKEAPVLRRSARRRSKGSVLRETRIAKLSRWSPRV
PGEIGVTATTRDEVTDKNSGKLLVAKVEAVEGLVLPEPLMAVGLSSSTTM
EATFLDD
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mRNA from alignment at F-serratus_M_contig88:645127..645447+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig88.20173.1 ID=mRNA_F-serratus_M_contig88.20173.1|Name=mRNA_F-serratus_M_contig88.20173.1|organism=Fucus serratus male|type=mRNA|length=321bp|location=Sequence derived from alignment at F-serratus_M_contig88:645127..645447+ (Fucus serratus male)
ATGGCAACTGCTAGCTGCTCTGGGGAAGGGGAGTGGGGAGCAGCCGTCAA
GGAGGCGCCGGTCCTACGTCGCTCAGCGAGACGCCGTTCGAAGGGCTCGG
TTCTGAGGGAGACTCGTATCGCGAAACTCTCGCGATGGAGTCCTCGAGTC
CCCGGCGAAATCGGTGTGACCGCGACAACGAGAGACGAGGTGACCGATAA
AAACAGCGGTAAATTGTTAGTCGCGAAGGTCGAGGCGGTCGAGGGGTTGG
TACTTCCGGAGCCCCTGATGGCGGTGGGTTTATCCTCGAGCACAACCATG
GAGGCGACTTTCTTGGATGAT
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Coding sequence (CDS) from alignment at F-serratus_M_contig88:645127..645447+

>mRNA_F-serratus_M_contig88.20173.1 ID=mRNA_F-serratus_M_contig88.20173.1|Name=mRNA_F-serratus_M_contig88.20173.1|organism=Fucus serratus male|type=CDS|length=642bp|location=Sequence derived from alignment at F-serratus_M_contig88:645127..645447+ (Fucus serratus male)
ATGGCAACTGCTAGCTGCTCTGGGGAAGGGGAGTGGGGAGCAGCCGTCAA
GGAGGCGCCGGTCCTACGTCGCTCAGCGAGACGCCGTTCGAAGGGCTCGG
TTCTGAGGGAGACTCGTATCGCGAAACTCTCGCGATGGAGTCCTCGAGTC
CCCGGCGAAATCGGTGTGACCGCGACAACGAGAGACGAGGTGACCGATAA
AAACAGCGGTAAATTGTTAGTCGCGAAGGTCGAGGCGGTCGAGGGGTTGG
TACTTCCGGAGCCCCTGATGGCGGTGGGTTTATCCTCGAGCACAACCATG
GAGGCGACTTTCTTGGATGATATGGCAACTGCTAGCTGCTCTGGGGAAGG
GGAGTGGGGAGCAGCCGTCAAGGAGGCGCCGGTCCTACGTCGCTCAGCGA
GACGCCGTTCGAAGGGCTCGGTTCTGAGGGAGACTCGTATCGCGAAACTC
TCGCGATGGAGTCCTCGAGTCCCCGGCGAAATCGGTGTGACCGCGACAAC
GAGAGACGAGGTGACCGATAAAAACAGCGGTAAATTGTTAGTCGCGAAGG
TCGAGGCGGTCGAGGGGTTGGTACTTCCGGAGCCCCTGATGGCGGTGGGT
TTATCCTCGAGCACAACCATGGAGGCGACTTTCTTGGATGAT
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