mRNA_F-serratus_M_contig88.20172.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig88.20172.1
Unique NamemRNA_F-serratus_M_contig88.20172.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig88.20172.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig88contigF-serratus_M_contig88:635197..638064 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size512
Cds size510
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932559.7733204-CDS-F-serratus_M_contig88:635196..6356081622932559.7733204-CDS-F-serratus_M_contig88:635196..635608Fucus serratus maleCDSF-serratus_M_contig88 635197..635608 -
1690964365.641099-CDS-F-serratus_M_contig88:635196..6356081690964365.641099-CDS-F-serratus_M_contig88:635196..635608Fucus serratus maleCDSF-serratus_M_contig88 635197..635608 -
1622932559.789737-CDS-F-serratus_M_contig88:637966..6380641622932559.789737-CDS-F-serratus_M_contig88:637966..638064Fucus serratus maleCDSF-serratus_M_contig88 637967..638064 -
1690964365.6524796-CDS-F-serratus_M_contig88:637966..6380641690964365.6524796-CDS-F-serratus_M_contig88:637966..638064Fucus serratus maleCDSF-serratus_M_contig88 637967..638064 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig88.20172.1prot_F-serratus_M_contig88.20172.1Fucus serratus malepolypeptideF-serratus_M_contig88 635197..638064 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig88.20172.1

>prot_F-serratus_M_contig88.20172.1 ID=prot_F-serratus_M_contig88.20172.1|Name=mRNA_F-serratus_M_contig88.20172.1|organism=Fucus serratus male|type=polypeptide|length=170bp
GENKANQGVENVIDSDGHRELGGSGSSEIFLKSHPAEESKSRSPSEPSGA
VATVGPPPHPRRGRNRDENDPHDATRCRNSDSSGDRHAHCHRGSSSENDS
LSLLGISSSMSRGDTTESWMRSRGSGSGGISTTTDGMLSGAGLGDGVGGG
GSTSEGSSKSSKNPCRGFLD
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mRNA from alignment at F-serratus_M_contig88:635197..638064-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig88.20172.1 ID=mRNA_F-serratus_M_contig88.20172.1|Name=mRNA_F-serratus_M_contig88.20172.1|organism=Fucus serratus male|type=mRNA|length=2868bp|location=Sequence derived from alignment at F-serratus_M_contig88:635197..638064- (Fucus serratus male)
GGAGAGAATAAGGCAAACCAGGGCGTTGAAAACGTTATAGATAGTGATGG
ACATCGTGAGCTGGGGGGAAGTGGTAGCAGCGAAATATTTCTGAAGAGGT
GAGAGAGCTGTCTCCTCAAGTTGGGTCGCCTATTCGAGAGCTAAGGGCGT
TGTATCTTTGCAGCGCCTTGAGTGAGGCAGCAGTCCGTAAAAAATGGCGC
GAAGATCTTTTCTTAGAGTGCGGTGTATCCCATAGCCCGGGAAGAAACCG
CATGTTGACCATGTCCTCGTCTCCAGAAGGGGGCATACCCTCGTGAAGTC
CCTGCGGCGGCTTAAGGAAAACCATTAGGTTCTGAACCTTCGGGAATGGA
TCCTGTGGTCAGGATTGGGATTCCGCGCAATATGTACTTGAAGTGACACT
TGCTACTGCTCCGTCAGTACTGCTAAAGTATGTACTGAACGCACTATTAA
TAGTAATAATATAAAATCAATAGTTTAATTGTGCCACGACTAAGATAGAT
AGAATTTTAAGGAAAACCAGAACTCGACCCCGGTAGCTCAAGGCACCTCG
TAACCTTCTGACACGTTGGGACGTGAGTTCGATCCCGGCAAATGGGATTT
TTCTCCTTAAAAAAACAAAATAAAAATGCCCAACGGGTGGAGAACGACTT
CTCAACTTGATGTCAGAACGCACCTATACCTTCTGAGCATCCTCCAGTCG
TTGTTTAAGAAACGCGGTTGTAAGAAAATCAGGCTAAGATTTTTGAAAAA
GTAAGAAACTGCCGAACCTCGTGCCACGAATCTGCTGGATTTTTATAGGA
AAAGCTAAGGAGTTCCCTACTTTTTCTCTGAAACAACACAAGCAACTGAA
GCTCAGCACGGATTTCGGTTTCTTATGAGAGGGCAGGTACACTGTATGTA
CATGGACAAGTACTTCAACCCGCGATACGTGAAACCTCCGATGTTTTTTT
AGTCTCGGAAAGCGCTTGTATAGTATATCTTGTGGGTAACACGAGGTACA
GCCGGTCGCCCCGGTAGCTCAGAAGTAACCTCGTAACCTTCTGGCACACG
TTGGGACGTGAGTTCGGATACCGGTAAATAAAATTTTTATAAATATACCC
AACAAGTGGAGAATGATTAAATCGTTAGTACAATTCGACTTCACGGTCGA
CGAGGGAAAAAAATGGCTGAACCCTTCTCGCGAAAAAAATTGAGGCACGC
ACCGCAGAAGGAAGGTGGATGAGAAATCCTGTGTGACCCCGGCTGGTACG
TCCAACGAACTTGATGTCCAGAATAAATGGGAAGAAAACACACACACACA
CACACACACTACAGGTTTAGCCAAGTCCACTTCAGTGGTACTAGAGTAGT
AATCCTGCTGCATGAGTTCCCTCGATTTACATCTAGAGCTTCATGTGTAG
TAAAGGTGGAAAGATACCTGGTATGAATAGCATGCAGCTGGTCTTAGTTT
GTAAGTTTCGTACGTATGCATACAGCTCCTCAGACTCGATCAGCACAACT
CATGAGGCACCGTACAGTACAGTACAGAGTACCCAACACTTGTAGTAATG
TAGTATTAATAGTAACAGCGCATATTAAATACAGTATTATATTTCGTAGT
AAACGGATAGGAATAGTTTGTACCTGTACGAGAACTTCTCCGTGTACGTG
AGGCTTCTAAAGTGCAGCACTCGACTAATAATATTACAGTTGTATAGCAG
TCCTGCGTTCTTAACTTTGGGGGGAAAGTACGATGTATGGTCACACATAA
TGTAGCAAGAGTTTGGATCAACCTGGTAAGGTTTTACAGCAGCTGTCGTG
GTAAATGTTAGAATGCAAGCGCGTAAGCAAATGTCGATCAGCCCTTGGTT
GACCAGAACAGACAGTCCTGAACTTGCACAGCGATATAAAGGCGTTGGCA
ATGAACCGGGGAGATATGGTAGGTCTCCTAGTGCCACAGATGGGATGGAC
AGCGCTTGCGGTGAATGATATTACAGTACTGACCTACTGGTATTACCTAA
GATCAGTACAGTAATAACCACAGCTGACCTTGAGAGAACCCATCCTCCGA
AAGTAACACACAAACATATCAAGAAACGAACATATAAAGAAACAAACACA
AAATTTCATGGTATACATTTCAGCTGGCGATCGGCCTCGACCAGCCGATG
AAAAATGGGCTGGGGAAAAATGGCCATCCCCCAGCCTAATCCAGCCTACT
ACTTTCTGTGCCACGCATGTCCACTACATACCATAAGTGGGTGTGGGAAA
AAGAGAGGCATAAGAATTAGTCCATGGTAAATACTGAAAAGAATGCGGAA
GGAATCCCACGACTAAGCGCCAGAATACTTTTTACCAGCCCCTGAGAATA
ACGCCTCCCTTTTCCTCTCGCCTAACAATGCGCTGTACCTCTTCACCGCG
TCTGTCGGAACACGATCGTAATGACACTTTTTGTTTTTTTGTTACAATAT
CAACAGCCATCCAGCGGAGGAATCGAAATCGCGCTCCCCCTCCGAACCAA
GTGGGGCAGTAGCAACAGTCGGTCCACCACCTCATCCTCGACGTGGACGA
AATAGAGACGAGAACGACCCGCATGACGCCACCCGTTGTCGGAATTCGGA
CTCCAGCGGTGACCGTCACGCTCATTGTCACCGAGGCAGTAGCAGCGAGA
ACGATAGTTTGAGCCTCTTGGGTATTTCCTCGTCTATGTCGAGAGGCGAC
ACCACTGAATCGTGGATGCGAAGTCGCGGCTCAGGCAGCGGTGGCATCAG
CACTACGACGGACGGAATGCTCAGTGGTGCCGGTCTCGGTGATGGCGTCG
GCGGTGGCGGTAGCACAAGCGAAGGATCGTCGAAGAGCAGTAAGAACCCC
TGCAGGGGTTTCCTCGAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig88:635197..638064-

>mRNA_F-serratus_M_contig88.20172.1 ID=mRNA_F-serratus_M_contig88.20172.1|Name=mRNA_F-serratus_M_contig88.20172.1|organism=Fucus serratus male|type=CDS|length=1020bp|location=Sequence derived from alignment at F-serratus_M_contig88:635197..638064- (Fucus serratus male)
GGAGAGAATAAGGCAAACCAGGGCGTTGAAAACGTTATAGATAGTGATGG
ACATCGTGAGCTGGGGGGAAGTGGTAGCAGCGAAATATTTCTGAAGAGGG
AGAGAATAAGGCAAACCAGGGCGTTGAAAACGTTATAGATAGTGATGGAC
ATCGTGAGCTGGGGGGAAGTGGTAGCAGCGAAATATTTCTGAAGAGCCAT
CCAGCGGAGGAATCGAAATCGCGCTCCCCCTCCGAACCAAGTGGGGCAGT
AGCAACAGTCGGTCCACCACCTCATCCTCGACGTGGACGAAATAGAGACG
AGAACGACCCGCATGACGCCACCCGTTGTCGGAATTCGGACTCCAGCGGT
GACCGTCACGCTCATTGTCACCGAGGCAGTAGCAGCGAGAACGATAGTTT
GAGCCTCTTGGGTATTTCCTCGTCTATGTCGAGAGGCGACACCACTGAAT
CGTGGATGCGAAGTCGCGGCTCAGGCAGCGGTGGCATCAGCACTACGACG
GACGGAATGCTCAGTGGTGCCGGTCTCGGTGATGGCGTCGGCGGTGGCGG
TAGCACAAGCGAAGGATCGTCGAAGAGCAGTAAGAACCCCTGCAGGGGTT
TCCTCGACCCATCCAGCGGAGGAATCGAAATCGCGCTCCCCCTCCGAACC
AAGTGGGGCAGTAGCAACAGTCGGTCCACCACCTCATCCTCGACGTGGAC
GAAATAGAGACGAGAACGACCCGCATGACGCCACCCGTTGTCGGAATTCG
GACTCCAGCGGTGACCGTCACGCTCATTGTCACCGAGGCAGTAGCAGCGA
GAACGATAGTTTGAGCCTCTTGGGTATTTCCTCGTCTATGTCGAGAGGCG
ACACCACTGAATCGTGGATGCGAAGTCGCGGCTCAGGCAGCGGTGGCATC
AGCACTACGACGGACGGAATGCTCAGTGGTGCCGGTCTCGGTGATGGCGT
CGGCGGTGGCGGTAGCACAAGCGAAGGATCGTCGAAGAGCAGTAAGAACC
CCTGCAGGGGTTTCCTCGAC
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