mRNA_F-serratus_M_contig88.20156.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig88.20156.1
Unique NamemRNA_F-serratus_M_contig88.20156.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig88.20156.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig88contigF-serratus_M_contig88:363682..364285 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size162
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932559.2984157-CDS-F-serratus_M_contig88:363681..3638031622932559.2984157-CDS-F-serratus_M_contig88:363681..363803Fucus serratus maleCDSF-serratus_M_contig88 363682..363803 -
1690964365.4735177-CDS-F-serratus_M_contig88:363681..3638031690964365.4735177-CDS-F-serratus_M_contig88:363681..363803Fucus serratus maleCDSF-serratus_M_contig88 363682..363803 -
1622932559.322243-CDS-F-serratus_M_contig88:364245..3642851622932559.322243-CDS-F-serratus_M_contig88:364245..364285Fucus serratus maleCDSF-serratus_M_contig88 364246..364285 -
1690964365.4856246-CDS-F-serratus_M_contig88:364245..3642851690964365.4856246-CDS-F-serratus_M_contig88:364245..364285Fucus serratus maleCDSF-serratus_M_contig88 364246..364285 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig88.20156.1prot_F-serratus_M_contig88.20156.1Fucus serratus malepolypeptideF-serratus_M_contig88 363682..364285 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig88.20156.1

>prot_F-serratus_M_contig88.20156.1 ID=prot_F-serratus_M_contig88.20156.1|Name=mRNA_F-serratus_M_contig88.20156.1|organism=Fucus serratus male|type=polypeptide|length=54bp
RVAARTLRTRQLLGNRERRQAAVLREAQQNAMYKDGYLRAFDPARPLHLE
SWVQ
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mRNA from alignment at F-serratus_M_contig88:363682..364285-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig88.20156.1 ID=mRNA_F-serratus_M_contig88.20156.1|Name=mRNA_F-serratus_M_contig88.20156.1|organism=Fucus serratus male|type=mRNA|length=604bp|location=Sequence derived from alignment at F-serratus_M_contig88:363682..364285- (Fucus serratus male)
CGGGTGGCTGCTCGGACACTACGGACTCGCCAGCTCCTAGGTAAAAAAAA
TACCGTTGCAAACATGTTGCACTTCGTTACCAACATGCATTGCCCAGCCC
TACGCACTACAGACCACGACATTGTGCCAAAAGGATTATCGAGGATTTGC
AGCAGTAGCACAACAGAGCACGCAATTGTCTTTACATATACGATCGACAA
TGTACAGGATTAGGGTCCATGCTAGAAACTGTGTGCTCGAAACTGTTTAG
AAGGAGAGCGCGCAGGTCTACCATCTACACGAATGTACACCAGTAGTTAT
TCTACACATGCTATGAAGATTGTACACCACTAGGGTCTGTGCTAAACTCA
CTGTGTTCGAAATTGTTCATGATAAGAGCGTGAAGGTCTATCGCCTGCAG
GTGTACAAACTCGTTGTCAAACAATCGGCACAAATACACTCATCGATACT
ATCCTGTTTTTCAAAACTATTCTGTTTCACAGGAAATCGTGAACGCCGAC
AGGCTGCGGTACTGCGCGAAGCACAGCAAAATGCTATGTATAAGGACGGT
TATCTGCGCGCCTTCGACCCCGCAAGACCTCTGCATTTAGAGTCGTGGGT
GCAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig88:363682..364285-

>mRNA_F-serratus_M_contig88.20156.1 ID=mRNA_F-serratus_M_contig88.20156.1|Name=mRNA_F-serratus_M_contig88.20156.1|organism=Fucus serratus male|type=CDS|length=324bp|location=Sequence derived from alignment at F-serratus_M_contig88:363682..364285- (Fucus serratus male)
CGGGTGGCTGCTCGGACACTACGGACTCGCCAGCTCCTAGCGGGTGGCTG
CTCGGACACTACGGACTCGCCAGCTCCTAGGAAATCGTGAACGCCGACAG
GCTGCGGTACTGCGCGAAGCACAGCAAAATGCTATGTATAAGGACGGTTA
TCTGCGCGCCTTCGACCCCGCAAGACCTCTGCATTTAGAGTCGTGGGTGC
AGGAAATCGTGAACGCCGACAGGCTGCGGTACTGCGCGAAGCACAGCAAA
ATGCTATGTATAAGGACGGTTATCTGCGCGCCTTCGACCCCGCAAGACCT
CTGCATTTAGAGTCGTGGGTGCAG
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