mRNA_F-serratus_M_contig879.20141.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig879.20141.1
Unique NamemRNA_F-serratus_M_contig879.20141.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig879.20141.1 vs. uniprot
Match: A0A6H5KR45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR45_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 1.080e-24
Identity = 46/60 (76.67%), Postives = 51/60 (85.00%), Query Frame = 1 
Query:  148 RLGCVLHILHIAVTAGMTSTFFMGPLGKGPWNEWERDHVFSLLGLVWYNTSRSDSCNANF 327
            RLG VLHILHI++TAG TS FFMGPLGKG W+EW   HVFSLLG+VWYNTSRS+S N NF
Sbjct:   67 RLGYVLHILHISITAGFTSVFFMGPLGKGSWHEWGTSHVFSLLGMVWYNTSRSNSSNTNF 126
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BLAST of mRNA_F-serratus_M_contig879.20141.1 vs. uniprot
Match: A0A6H5KP72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP72_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 2.260e-19
Identity = 36/45 (80.00%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:  196 MTSTFFMGPLGKGPWNEWERDHVFSLLGLVWYNTSRSDSCNANFE 330
            MTS +FMGPLGKG W+EWERDHVFSLLG+VWY+TSRS+S NANF+
Sbjct:    1 MTSLYFMGPLGKGSWHEWERDHVFSLLGMVWYSTSRSESSNANFQ 45
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BLAST of mRNA_F-serratus_M_contig879.20141.1 vs. uniprot
Match: A0A6H5KSR2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSR2_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 6.170e-19
Identity = 36/45 (80.00%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:  196 MTSTFFMGPLGKGPWNEWERDHVFSLLGLVWYNTSRSDSCNANFE 330
            MTS  FMGPLGKG W+EWERDHVFSLLG+VWYNTSRS S N NF+
Sbjct:    1 MTSALFMGPLGKGSWHEWERDHVFSLLGMVWYNTSRSGSSNGNFQ 45
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BLAST of mRNA_F-serratus_M_contig879.20141.1 vs. uniprot
Match: D7FIQ1_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIQ1_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 1.100e-18
Identity = 37/45 (82.22%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:  196 MTSTFFMGPLGKGPWNEWERDHVFSLLGLVWYNTSRSDSCNANFE 330
            MTS +FMGPLGKG W+EWERDHVFSLLG+VWYNTSRS+S NANF+
Sbjct:    1 MTSVYFMGPLGKGSWHEWERDHVFSLLGMVWYNTSRSESSNANFQ 45
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BLAST of mRNA_F-serratus_M_contig879.20141.1 vs. uniprot
Match: A0A6H5L8G1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8G1_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.360e-18
Identity = 36/45 (80.00%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:  196 MTSTFFMGPLGKGPWNEWERDHVFSLLGLVWYNTSRSDSCNANFE 330
            MTS +FMGPLGKG W+EWERDHVFSLLG+VWY+TSRS+S NANF+
Sbjct:    1 MTSLYFMGPLGKGSWHEWERDHVFSLLGMVWYSTSRSESSNANFQ 45
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BLAST of mRNA_F-serratus_M_contig879.20141.1 vs. uniprot
Match: A0A6H5KH75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH75_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 4.170e-18
Identity = 36/45 (80.00%), Postives = 41/45 (91.11%), Query Frame = 1 
Query:  196 MTSTFFMGPLGKGPWNEWERDHVFSLLGLVWYNTSRSDSCNANFE 330
            MTS  FMGPLGKG W+EWERDH+FSLLG+VWYNTSRS+S NANF+
Sbjct:    1 MTSALFMGPLGKGSWHEWERDHIFSLLGMVWYNTSRSESSNANFQ 45
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BLAST of mRNA_F-serratus_M_contig879.20141.1 vs. uniprot
Match: A0A6H5JW26_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW26_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 1.710e-17
Identity = 35/45 (77.78%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:  196 MTSTFFMGPLGKGPWNEWERDHVFSLLGLVWYNTSRSDSCNANFE 330
            MTS  FMGPLGKG W+EWERDHVFSLLG+VWYNTSRS S N  F+
Sbjct:    1 MTSALFMGPLGKGSWHEWERDHVFSLLGMVWYNTSRSGSSNGKFQ 45
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BLAST of mRNA_F-serratus_M_contig879.20141.1 vs. uniprot
Match: A0A6H5JI13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI13_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 6.160e-17
Identity = 35/45 (77.78%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:  196 MTSTFFMGPLGKGPWNEWERDHVFSLLGLVWYNTSRSDSCNANFE 330
            MTS  FMGPLGKG W+EWERDHVFSLLG+VWYNTSRS+  NA+F+
Sbjct:    1 MTSALFMGPLGKGSWHEWERDHVFSLLGMVWYNTSRSEPSNASFQ 45
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BLAST of mRNA_F-serratus_M_contig879.20141.1 vs. uniprot
Match: A0A6H5JN38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN38_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 4.610e-9
Identity = 25/39 (64.10%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:  196 MTSTFFMGPLGKGPWNEWERDHVFSLLGLVWYNTSRSDS 312
            M   FFMGPLGKG W+EWE +H+ +LL  +WYN SRSDS
Sbjct:    1 MECEFFMGPLGKGSWHEWEDNHLVALLATLWYNISRSDS 39
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig879.20141.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5KR45_9PHAE1.080e-2476.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP72_9PHAE2.260e-1980.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSR2_9PHAE6.170e-1980.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FIQ1_ECTSI1.100e-1882.22Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
A0A6H5L8G1_9PHAE1.360e-1880.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KH75_9PHAE4.170e-1880.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JW26_9PHAE1.710e-1777.78Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JI13_9PHAE6.160e-1777.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN38_9PHAE4.610e-964.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig879contigF-serratus_M_contig879:245912..246241 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size330
Cds size306
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932559.232934-UTR-F-serratus_M_contig879:245911..2459351622932559.232934-UTR-F-serratus_M_contig879:245911..245935Fucus serratus maleUTRF-serratus_M_contig879 245912..245935 +
1690964365.4540546-UTR-F-serratus_M_contig879:245911..2459351690964365.4540546-UTR-F-serratus_M_contig879:245911..245935Fucus serratus maleUTRF-serratus_M_contig879 245912..245935 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932559.24921-CDS-F-serratus_M_contig879:245935..2462411622932559.24921-CDS-F-serratus_M_contig879:245935..246241Fucus serratus maleCDSF-serratus_M_contig879 245936..246241 +
1690964365.4635892-CDS-F-serratus_M_contig879:245935..2462411690964365.4635892-CDS-F-serratus_M_contig879:245935..246241Fucus serratus maleCDSF-serratus_M_contig879 245936..246241 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig879.20141.1prot_F-serratus_M_contig879.20141.1Fucus serratus malepolypeptideF-serratus_M_contig879 245936..246241 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig879.20141.1

>prot_F-serratus_M_contig879.20141.1 ID=prot_F-serratus_M_contig879.20141.1|Name=mRNA_F-serratus_M_contig879.20141.1|organism=Fucus serratus male|type=polypeptide|length=102bp
MSHSTPEQPTFGEHDESDALPSDAIAAAELDDLRDRRVYAARLGCVLHIL
HIAVTAGMTSTFFMGPLGKGPWNEWERDHVFSLLGLVWYNTSRSDSCNAN
FE
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mRNA from alignment at F-serratus_M_contig879:245912..246241+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig879.20141.1 ID=mRNA_F-serratus_M_contig879.20141.1|Name=mRNA_F-serratus_M_contig879.20141.1|organism=Fucus serratus male|type=mRNA|length=330bp|location=Sequence derived from alignment at F-serratus_M_contig879:245912..246241+ (Fucus serratus male)
GCACGGACCCACACCGAAATAGATATGTCTCACAGCACACCCGAGCAGCC
GACGTTCGGCGAACACGATGAGAGTGATGCTTTACCTAGTGACGCAATCG
CTGCTGCTGAGCTCGATGACCTCCGAGATAGAAGGGTCTATGCTGCTCGT
CTAGGGTGTGTCCTGCATATCCTCCACATCGCTGTTACTGCAGGGATGAC
CAGCACATTCTTCATGGGCCCACTCGGCAAGGGCCCGTGGAACGAGTGGG
AAAGAGATCACGTGTTCTCCCTTCTCGGCCTCGTATGGTACAACACGAGC
CGCTCCGATTCGTGCAACGCAAATTTCGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig879:245912..246241+

>mRNA_F-serratus_M_contig879.20141.1 ID=mRNA_F-serratus_M_contig879.20141.1|Name=mRNA_F-serratus_M_contig879.20141.1|organism=Fucus serratus male|type=CDS|length=612bp|location=Sequence derived from alignment at F-serratus_M_contig879:245912..246241+ (Fucus serratus male)
ATGTCTCACAGCACACCCGAGCAGCCGACGTTCGGCGAACACGATGAGAG
TGATGCTTTACCTAGTGACGCAATCGCTGCTGCTGAGCTCGATGACCTCC
GAGATAGAAGGGTCTATGCTGCTCGTCTAGGGTGTGTCCTGCATATCCTC
CACATCGCTGTTACTGCAGGGATGACCAGCACATTCTTCATGGGCCCACT
CGGCAAGGGCCCGTGGAACGAGTGGGAAAGAGATCACGTGTTCTCCCTTC
TCGGCCTCGTATGGTACAACACGAGCCGCTCCGATTCGTGCAACGCAAAT
TTCGAGATGTCTCACAGCACACCCGAGCAGCCGACGTTCGGCGAACACGA
TGAGAGTGATGCTTTACCTAGTGACGCAATCGCTGCTGCTGAGCTCGATG
ACCTCCGAGATAGAAGGGTCTATGCTGCTCGTCTAGGGTGTGTCCTGCAT
ATCCTCCACATCGCTGTTACTGCAGGGATGACCAGCACATTCTTCATGGG
CCCACTCGGCAAGGGCCCGTGGAACGAGTGGGAAAGAGATCACGTGTTCT
CCCTTCTCGGCCTCGTATGGTACAACACGAGCCGCTCCGATTCGTGCAAC
GCAAATTTCGAG
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