mRNA_F-serratus_M_contig127.2013.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig127.2013.1
Unique NamemRNA_F-serratus_M_contig127.2013.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig127.2013.1 vs. uniprot
Match: D8LLJ7_ECTSI (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLJ7_ECTSI)

HSP 1 Score: 365 bits (936), Expect = 9.900e-124
Identity = 170/185 (91.89%), Postives = 178/185 (96.22%), Query Frame = 1 
Query:  160 MASPDPAIAEAIARGNPVVFFDVTIGGAPAGRIKMELFKDTSPKTAENFRQFCTGEHRREGIPAGYKGSPFHRVIKDFMLQGGDFVKGDGTGRMSIYGEKFGDENFDLRHTGPGLLSMANSGPNTNGCQFFITTAKADWLDGLHVVFGKVLDPSSMLTVRKVENVSTGANNKPRLAVVVQECGEL 714
            MASPDPAIAEA+ARGNPVVFFDVTIGGAPAGRIKMELFKDT PKTAENFR+FCTGEHR +GIP GYKG+PFHRVIKDFMLQGGDFVKGDGTGRMSIYGEKF DENFDLRHTGPGLLSMANSGPNTNGCQFF+TTAKA WLDGLHVVFGKVLDP+SMLTVRK+ENVSTG NNKPRL VV+QECGEL
Sbjct:    1 MASPDPAIAEAVARGNPVVFFDVTIGGAPAGRIKMELFKDTCPKTAENFRRFCTGEHRHQGIPTGYKGAPFHRVIKDFMLQGGDFVKGDGTGRMSIYGEKFADENFDLRHTGPGLLSMANSGPNTNGCQFFVTTAKAAWLDGLHVVFGKVLDPASMLTVRKIENVSTGVNNKPRLTVVIQECGEL 185
[Close]
BLAST of mRNA_F-serratus_M_contig127.2013.1 vs. uniprot
Match: A0A835Z972_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z972_9STRA)

HSP 1 Score: 312 bits (800), Expect = 4.100e-103
Identity = 143/185 (77.30%), Postives = 160/185 (86.49%), Query Frame = 1 
Query:  160 MASPDPAIAEAIARGNPVVFFDVTIGGAPAGRIKMELFKDTSPKTAENFRQFCTGEHRREGIPAGYKGSPFHRVIKDFMLQGGDFVKGDGTGRMSIYGEKFGDENFDLRHTGPGLLSMANSGPNTNGCQFFITTAKADWLDGLHVVFGKVLDPSSMLTVRKVENVSTGANNKPRLAVVVQECGEL 714
            MASPDPA+AEA+ RG+PVVF D+ IGG   GRIK+ELF D  PKTAENFRQFCTGE +R+ +P GYKG+PFHRVIK FM+QGGDFVKGDGTGRMSIYGEKF DENFDLRHTGPGLLS ANSGPNTNGCQFF T AKA+WLDG H VFGKVLDP+SM  +RKVENV+ G +N+PRL VVV +CGEL
Sbjct:    1 MASPDPAVAEAVDRGSPVVFMDIAIGGTEMGRIKIELFADVCPKTAENFRQFCTGEFKRQNLPVGYKGAPFHRVIKGFMIQGGDFVKGDGTGRMSIYGEKFDDENFDLRHTGPGLLSSANSGPNTNGCQFFFTLAKAEWLDGKHTVFGKVLDPASMNVLRKVENVTVGTHNRPRLPVVVSQCGEL 185
[Close]
BLAST of mRNA_F-serratus_M_contig127.2013.1 vs. uniprot
Match: A0A7S2BCB3_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BCB3_9STRA)

HSP 1 Score: 294 bits (753), Expect = 8.890e-96
Identity = 135/184 (73.37%), Postives = 157/184 (85.33%), Query Frame = 1 
Query:  166 SPDPAIAEAIARGNPVVFFDVTIGGAPAGRIKMELFKDTSPKTAENFRQFCTGEHRREGIPAGYKGSPFHRVIKDFMLQGGDFVKGDGTGRMSIYGEKFGDENFDLRHTGPGLLSMANSGPNTNGCQFFITTAKADWLDGLHVVFGKVLDPSSMLTVRKVENVSTGA-NNKPRLAVVVQECGEL 714
            S DPA+AEA+ RGNPVVFFD+TIGG PAGRIKMELF D  P+TAENFR+FCTGE RR   P GYK SPFHR+IK+FM+QGGDF+K DGTGRMSIYGE+F DENF+LRH+ PGLLSMANSGPNTNGCQFF+T AK +WLDG HVVFGKVLDP+S++ +RK ENV     +NKP+L V+V +CGEL
Sbjct:   17 SADPAVAEAVERGNPVVFFDMTIGGVPAGRIKMELFADECPRTAENFRKFCTGEFRRSNHPVGYKDSPFHRIIKEFMIQGGDFLKQDGTGRMSIYGERFDDENFNLRHSAPGLLSMANSGPNTNGCQFFLTCAKCEWLDGKHVVFGKVLDPASLMVLRKCENVQVEPKSNKPKLPVIVAQCGEL 200
[Close]
BLAST of mRNA_F-serratus_M_contig127.2013.1 vs. uniprot
Match: K8YRK9_NANGC (Peptidyl-prolyl cis-trans isomerase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YRK9_NANGC)

HSP 1 Score: 290 bits (742), Expect = 1.920e-94
Identity = 138/181 (76.24%), Postives = 149/181 (82.32%), Query Frame = 1 
Query:  172 DPAIAEAIARGNPVVFFDVTIGGAPAGRIKMELFKDTSPKTAENFRQFCTGEHRREGIPAGYKGSPFHRVIKDFMLQGGDFVKGDGTGRMSIYGEKFGDENFDLRHTGPGLLSMANSGPNTNGCQFFITTAKADWLDGLHVVFGKVLDPSSMLTVRKVENVSTGANNKPRLAVVVQECGEL 714
            D A+ EA+ RGNPVVF DV+I   PAGRIKMELFKD  PKT ENFRQFCTGE+R  G+P GYKGSPFHRVIKDFM+QGGDF+KGDG+G  SIYG+KF DENFDLRHTGPGLLSMANSGPNTNGCQFFIT  K +WLDG HVVFGKVLDP+SMLTVRKVEN         RL V V ECGEL
Sbjct:    3 DSAVLEAVNRGNPVVFLDVSIANRPAGRIKMELFKDVVPKTVENFRQFCTGEYRESGLPLGYKGSPFHRVIKDFMIQGGDFMKGDGSGLKSIYGDKFADENFDLRHTGPGLLSMANSGPNTNGCQFFITCDKCEWLDGKHVVFGKVLDPASMLTVRKVENTDV-----KRLKVEVTECGEL 178
[Close]
BLAST of mRNA_F-serratus_M_contig127.2013.1 vs. uniprot
Match: A0A485LRW0_9STRA (Peptidyl-prolyl cis-trans isomerase n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A485LRW0_9STRA)

HSP 1 Score: 289 bits (740), Expect = 4.420e-94
Identity = 133/181 (73.48%), Postives = 151/181 (83.43%), Query Frame = 1 
Query:  172 DPAIAEAIARGNPVVFFDVTIGGAPAGRIKMELFKDTSPKTAENFRQFCTGEHRREGIPAGYKGSPFHRVIKDFMLQGGDFVKGDGTGRMSIYGEKFGDENFDLRHTGPGLLSMANSGPNTNGCQFFITTAKADWLDGLHVVFGKVLDPSSMLTVRKVENVSTGANNKPRLAVVVQECGEL 714
            DP +AEA+ +GN VVFFDV +GGAP GRI+MELFK+  PKT ENFRQFCTGE+RR  +P GYK S FHRVIKDFM+QGGDF+KGDGTGRMSIYG+KF DEN  LRHT  GLLSMANSGP TNGCQFFIT    DWLDG HVVFGK+LD +S+L +RK+E+V TGANNKPR  VV+ ECGEL
Sbjct:    2 DPLLAEALRKGNVVVFFDVALGGAPLGRIRMELFKNECPKTVENFRQFCTGEYRRNELPVGYKASTFHRVIKDFMVQGGDFLKGDGTGRMSIYGDKFADENLTLRHTEAGLLSMANSGPGTNGCQFFITCGPCDWLDGKHVVFGKLLDSASLLVMRKIESVPTGANNKPRTPVVITECGEL 182
[Close]
BLAST of mRNA_F-serratus_M_contig127.2013.1 vs. uniprot
Match: A0A067CUM4_SAPPC (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CUM4_SAPPC)

HSP 1 Score: 288 bits (737), Expect = 1.250e-93
Identity = 132/181 (72.93%), Postives = 152/181 (83.98%), Query Frame = 1 
Query:  172 DPAIAEAIARGNPVVFFDVTIGGAPAGRIKMELFKDTSPKTAENFRQFCTGEHRREGIPAGYKGSPFHRVIKDFMLQGGDFVKGDGTGRMSIYGEKFGDENFDLRHTGPGLLSMANSGPNTNGCQFFITTAKADWLDGLHVVFGKVLDPSSMLTVRKVENVSTGANNKPRLAVVVQECGEL 714
            DPA++EA+ RGNPVVFFDV +G AP GRIKMELFK   PKT ENFRQFCTGE+RR  +P GYKGS FHRVI DFM+QGGDF+KGDGTGRMSIYG+KF DE+F  +HT PGLLSMANSG +TNGCQFFIT A  DWLDG HVVFGK+LDP+S+L +RK+E+V TGA NKP+  V + ECGEL
Sbjct:    2 DPALSEAVRRGNPVVFFDVALGNAPLGRIKMELFKRECPKTVENFRQFCTGEYRRGDMPTGYKGSHFHRVIPDFMIQGGDFLKGDGTGRMSIYGDKFADESFAYKHTEPGLLSMANSGVDTNGCQFFITCAPCDWLDGKHVVFGKLLDPASLLVMRKIESVQTGAANKPKTPVTITECGEL 182
[Close]
BLAST of mRNA_F-serratus_M_contig127.2013.1 vs. uniprot
Match: A0A7S2DPX7_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DPX7_9STRA)

HSP 1 Score: 288 bits (736), Expect = 2.180e-93
Identity = 131/184 (71.20%), Postives = 154/184 (83.70%), Query Frame = 1 
Query:  166 SPDPAIAEAIARGNPVVFFDVTIGGAPAGRIKMELFKDTSPKTAENFRQFCTGEHRREGIPAGYKGSPFHRVIKDFMLQGGDFVKGDGTGRMSIYGEKFGDENFDLRHTGPGLLSMANSGPNTNGCQFFITTAKADWLDGLHVVFGKVLDPSSMLTVRKVENVSTGAN-NKPRLAVVVQECGEL 714
            S DPA+ EA+ RGNPVVFFD+TIGG PAGRIKMELF D  PKTAENFRQFCTGE RR   P GYKGSPFHR+I++FM+Q GDF+K DGTGR+SIYGEKF DE+F LRH  PGLLSMANSGPNTNGCQFF+T A+ +WLDG HVVFGKVLDP+S++ +RK+ENV      +KP+L V++ +CGEL
Sbjct:    5 SADPAVLEAVERGNPVVFFDITIGGVPAGRIKMELFADECPKTAENFRQFCTGEFRRANHPVGYKGSPFHRIIREFMIQAGDFLKQDGTGRISIYGEKFEDESFSLRHNEPGLLSMANSGPNTNGCQFFLTCARCEWLDGKHVVFGKVLDPASLMVLRKIENVQVDPKTSKPKLPVLIAQCGEL 188
[Close]
BLAST of mRNA_F-serratus_M_contig127.2013.1 vs. uniprot
Match: A0A482RTU9_9ARCH (Peptidylprolyl isomerase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RTU9_9ARCH)

HSP 1 Score: 286 bits (731), Expect = 1.010e-92
Identity = 130/181 (71.82%), Postives = 150/181 (82.87%), Query Frame = 1 
Query:  172 DPAIAEAIARGNPVVFFDVTIGGAPAGRIKMELFKDTSPKTAENFRQFCTGEHRREGIPAGYKGSPFHRVIKDFMLQGGDFVKGDGTGRMSIYGEKFGDENFDLRHTGPGLLSMANSGPNTNGCQFFITTAKADWLDGLHVVFGKVLDPSSMLTVRKVENVSTGANNKPRLAVVVQECGEL 714
            DP ++ AI RGNPVVFFDV+IGG  AGRI++ELF D  PKTAENFRQFC GE+RR  +P GYK  PFHRVIK FM+QGGDF +GDGTG++SIYG  F DENF LRHTG GLLSMANSGPNTNGCQFFIT  K DWLDG HVVFGKVLD +S+L VRK+ENV +G N+KP+L V +++CGEL
Sbjct:    2 DPTLSAAIERGNPVVFFDVSIGGVAAGRIRIELFADVCPKTAENFRQFCCGEYRRNTLPVGYKACPFHRVIKGFMIQGGDFERGDGTGKLSIYGSSFPDENFVLRHTGAGLLSMANSGPNTNGCQFFITCGKCDWLDGKHVVFGKVLDDASLLVVRKIENVPSGPNDKPKLPVTIEQCGEL 182
[Close]
BLAST of mRNA_F-serratus_M_contig127.2013.1 vs. uniprot
Match: A0A7S1UGG5_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UGG5_9STRA)

HSP 1 Score: 282 bits (721), Expect = 3.520e-91
Identity = 130/182 (71.43%), Postives = 148/182 (81.32%), Query Frame = 1 
Query:  172 DPAIAEAIARGNPVVFFDVTIGGAPAGRIKMELFKDTSPKTAENFRQFCTGEHRREGIPAGYKGSPFHRVIKDFMLQGGDFVKGDGTGRMSIYGEKFGDENFDLRHTGPGLLSMANSGPNTNGCQFFITTAKADWLDGLHVVFGKVLDPSSMLTVRKVENVSTGA-NNKPRLAVVVQECGEL 714
            DPA+ EA+ RGNPVVFFD+TIGG PAGRIKME+FKD  PKTAENFRQFCTGE R    P GYKG+ FHR+IKDFM+QGGDF+ GDGTG  SIYG++F DENF L+H GPG LSMANSGP TNGCQFFIT A  D+LD  HVVFGKVLD  S+L VRK+ENV T + NN PR+ VV+ +CGEL
Sbjct:    3 DPAVLEAVGRGNPVVFFDITIGGIPAGRIKMEIFKDVVPKTAENFRQFCTGEFREHDQPIGYKGATFHRIIKDFMIQGGDFISGDGTGSKSIYGDRFEDENFTLQHLGPGFLSMANSGPGTNGCQFFITAAACDFLDNKHVVFGKVLDAESLLVVRKIENVPTSSGNNAPRMPVVIADCGEL 184
[Close]
BLAST of mRNA_F-serratus_M_contig127.2013.1 vs. uniprot
Match: A0A7S3RA41_DUNTE (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3RA41_DUNTE)

HSP 1 Score: 280 bits (717), Expect = 1.320e-90
Identity = 129/176 (73.30%), Postives = 145/176 (82.39%), Query Frame = 1 
Query:  184 AEAIARGNPVVFFDVTIGGAPAGRIKMELFKDTSPKTAENFRQFCTGEHRREGIPAGYKGSPFHRVIKDFMLQGGDFVKGDGTGRMSIYGEKFGDENFDLRHTGPGLLSMANSGPNTNGCQFFITTAKADWLDGLHVVFGKVLDPSSMLTVRKVENVSTGANNKPRLAVVVQECGE 711
            A A    NPVVFFDVTIGG PAGRIKMELF D  PKT ENFRQFCTGEHRR+G+P GYKGS FHRVIK+FM+QGGDF+KGDGTG  SIYG +F DENF  +HTGPGLLSMANSGPN+NGCQFFIT AK DW+D  HVVFG+V++   ML VRK+ENV+TG NNKP L  ++ ECGE
Sbjct:    7 ARARNPSNPVVFFDVTIGGMPAGRIKMELFADVCPKTCENFRQFCTGEHRRQGLPVGYKGSSFHRVIKEFMIQGGDFLKGDGTGSTSIYGSRFADENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKTDWIDNKHVVFGRVIE-DGMLVVRKIENVATGKNNKPNLPCIITECGE 181
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig127.2013.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLJ7_ECTSI9.900e-12491.89Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ectoca... [more]
A0A835Z972_9STRA4.100e-10377.30Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribon... [more]
A0A7S2BCB3_9STRA8.890e-9673.37Peptidyl-prolyl cis-trans isomerase n=1 Tax=Floren... [more]
K8YRK9_NANGC1.920e-9476.24Peptidyl-prolyl cis-trans isomerase n=3 Tax=Monodo... [more]
A0A485LRW0_9STRA4.420e-9473.48Peptidyl-prolyl cis-trans isomerase n=5 Tax=Aphano... [more]
A0A067CUM4_SAPPC1.250e-9372.93Peptidyl-prolyl cis-trans isomerase n=2 Tax=Saprol... [more]
A0A7S2DPX7_9STRA2.180e-9371.20Peptidyl-prolyl cis-trans isomerase n=1 Tax=Dictyo... [more]
A0A482RTU9_9ARCH1.010e-9271.82Peptidylprolyl isomerase n=1 Tax=archaeon TaxID=19... [more]
A0A7S1UGG5_9STRA3.520e-9171.43Peptidyl-prolyl cis-trans isomerase n=1 Tax=Phaeom... [more]
A0A7S3RA41_DUNTE1.320e-9073.30Peptidyl-prolyl cis-trans isomerase n=1 Tax=Dunali... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig127contigF-serratus_M_contig127:672625..679689 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score365.2
Seed ortholog evalue1.9e-98
Seed eggNOG ortholog2880.D8LLJ7
Preferred namePPIH
KEGG koko:K09567
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005737,GO:0006139,GO:0006396,GO:0006397,GO:0006457,GO:0006464,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016018,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0022607,GO:0030532,GO:0031974,GO:0031981,GO:0032991,GO:0033218,GO:0034641,GO:0036211,GO:0042277,GO:0043021,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043900,GO:0043902,GO:0043903,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044877,GO:0045069,GO:0045070,GO:0045292,GO:0046483,GO:0046540,GO:0048518,GO:0048524,GO:0050789,GO:0050792,GO:0065003,GO:0065007,GO:0070013,GO:0071001,GO:0071704,GO:0071840,GO:0090304,GO:0097525,GO:0097526,GO:0120114,GO:0140096,GO:1901360,GO:1901564,GO:1903900,GO:1903902,GO:1990904
EggNOG free text desc.peptidyl-prolyl cis-trans isomerase activity
EggNOG OGsCOG0652@1,KOG0879@2759
Ec32 ortholog descriptionCyclophilin-type peptidyl-prolyl cis-trans isomerase
Ec32 orthologEc-04_005600.1
EC5.2.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03041,ko03110
Exons6
Model size1255
Cds size558
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig127.2013.1prot_F-serratus_M_contig127.2013.1Fucus serratus malepolypeptideF-serratus_M_contig127 673229..679530 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929203.518156-UTR-F-serratus_M_contig127:672624..6727101622929203.518156-UTR-F-serratus_M_contig127:672624..672710Fucus serratus maleUTRF-serratus_M_contig127 672625..672710 -
1690962748.932775-UTR-F-serratus_M_contig127:672624..6727101690962748.932775-UTR-F-serratus_M_contig127:672624..672710Fucus serratus maleUTRF-serratus_M_contig127 672625..672710 -
1622929203.5321884-UTR-F-serratus_M_contig127:672776..6732281622929203.5321884-UTR-F-serratus_M_contig127:672776..673228Fucus serratus maleUTRF-serratus_M_contig127 672777..673228 -
1690962748.9442363-UTR-F-serratus_M_contig127:672776..6732281690962748.9442363-UTR-F-serratus_M_contig127:672776..673228Fucus serratus maleUTRF-serratus_M_contig127 672777..673228 -
1622929203.646356-UTR-F-serratus_M_contig127:679530..6796891622929203.646356-UTR-F-serratus_M_contig127:679530..679689Fucus serratus maleUTRF-serratus_M_contig127 679531..679689 -
1690962749.0007148-UTR-F-serratus_M_contig127:679530..6796891690962749.0007148-UTR-F-serratus_M_contig127:679530..679689Fucus serratus maleUTRF-serratus_M_contig127 679531..679689 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929203.546885-CDS-F-serratus_M_contig127:673228..6733391622929203.546885-CDS-F-serratus_M_contig127:673228..673339Fucus serratus maleCDSF-serratus_M_contig127 673229..673339 -
1690962748.9533951-CDS-F-serratus_M_contig127:673228..6733391690962748.9533951-CDS-F-serratus_M_contig127:673228..673339Fucus serratus maleCDSF-serratus_M_contig127 673229..673339 -
1622929203.5626616-CDS-F-serratus_M_contig127:673790..6739031622929203.5626616-CDS-F-serratus_M_contig127:673790..673903Fucus serratus maleCDSF-serratus_M_contig127 673791..673903 -
1690962748.9627311-CDS-F-serratus_M_contig127:673790..6739031690962748.9627311-CDS-F-serratus_M_contig127:673790..673903Fucus serratus maleCDSF-serratus_M_contig127 673791..673903 -
1622929203.5757713-CDS-F-serratus_M_contig127:674126..6742801622929203.5757713-CDS-F-serratus_M_contig127:674126..674280Fucus serratus maleCDSF-serratus_M_contig127 674127..674280 -
1690962748.9720876-CDS-F-serratus_M_contig127:674126..6742801690962748.9720876-CDS-F-serratus_M_contig127:674126..674280Fucus serratus maleCDSF-serratus_M_contig127 674127..674280 -
1622929203.586849-CDS-F-serratus_M_contig127:675503..6756531622929203.586849-CDS-F-serratus_M_contig127:675503..675653Fucus serratus maleCDSF-serratus_M_contig127 675504..675653 -
1690962748.980535-CDS-F-serratus_M_contig127:675503..6756531690962748.980535-CDS-F-serratus_M_contig127:675503..675653Fucus serratus maleCDSF-serratus_M_contig127 675504..675653 -
1622929203.629115-CDS-F-serratus_M_contig127:679500..6795301622929203.629115-CDS-F-serratus_M_contig127:679500..679530Fucus serratus maleCDSF-serratus_M_contig127 679501..679530 -
1690962748.9899626-CDS-F-serratus_M_contig127:679500..6795301690962748.9899626-CDS-F-serratus_M_contig127:679500..679530Fucus serratus maleCDSF-serratus_M_contig127 679501..679530 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig127.2013.1

>prot_F-serratus_M_contig127.2013.1 ID=prot_F-serratus_M_contig127.2013.1|Name=mRNA_F-serratus_M_contig127.2013.1|organism=Fucus serratus male|type=polypeptide|length=186bp
MASPDPAIAEAIARGNPVVFFDVTIGGAPAGRIKMELFKDTSPKTAENFR
QFCTGEHRREGIPAGYKGSPFHRVIKDFMLQGGDFVKGDGTGRMSIYGEK
FGDENFDLRHTGPGLLSMANSGPNTNGCQFFITTAKADWLDGLHVVFGKV
LDPSSMLTVRKVENVSTGANNKPRLAVVVQECGEL*
back to top

mRNA from alignment at F-serratus_M_contig127:672625..679689-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig127.2013.1 ID=mRNA_F-serratus_M_contig127.2013.1|Name=mRNA_F-serratus_M_contig127.2013.1|organism=Fucus serratus male|type=mRNA|length=7065bp|location=Sequence derived from alignment at F-serratus_M_contig127:672625..679689- (Fucus serratus male)
GGCTCCGGGTCACATACATATTCTGCTCGGGTGGTCTGACAGAAAGAACC
GTCCTGTGGCTTCCACCAGCAGCACTGGGGAGCTCTATTCTTCAGATCCA
TTGCTATTGCAGCATTACGGCTTGACTAGTCCGAGGTCCAAATTCTAGAT
CACTGGATTATGGCCTCGCCTGATCCGGCCATCGCCGAGGTTAGTCCTAC
ACAAAAACAAGAAAGAGCCAGCAGACTTACACAACATGTAGAGTGGGATG
ACAGGGGTATTGACATTTTACCCAGGAGCATTAAGTATTGCCTTGATGTT
ACTGTCGATTTGGACTGCGTTCCAGTCTCGCAGAGCTTGCTGCCATACCT
GACCGCATGTCAAAATACGGTGTCAATCTATCAACAACATATTCATATTC
GGGGTGCTCCCGTTCGCTCCCGAACACAGTTTGAAAGTTTGAAACCCATT
TATTTCATAACTCGATATCTATACAAAACGGGAAAATCGAAAATCCCTCG
GCACCGGATACTGTTTTATGATGTACGTGCCTGTGACCATGTTGGACTCT
TTGCAGAGTTTCGAAAGAAAAATAGATTTGTTAATCCTCCTCGCGTCATG
CTTACGAATCAACTACCGTACCCAGTCGCGATTGCCATTTGACTTGTCCG
TGATATGTTCGGTTCAGCACTGCACAGCAGTCCAAAACAACAGTAGTAGA
AGAAGAAAATATATCTACCTGGTATATTGCAAAGCAGTACCATCTTTAGC
AACTTGACTTGTGGAAACTGGCACACATGTGTACAACAGATTTTCATGTG
AGACTATCTTCAGCAATACAATGCTTGGTGAAGGCCTCGTTATCACCTGA
CATCCAATGGAATGTTGTCTCTCGTATCGATCAATTCGATTATAGGGTCT
GAGGCACGTGAAATGAAAACAAAAATTGACTCCTGTTGGTACAAATATGT
TCTTTCATGGTGTATTTCTTGTTACATTTTCGATCATAACCCTCTTCCAG
TTGCAGCACTTACTGTGAGTAAGAGTTTGGTTGTCTACGAGGCACTATTC
TATTTAATAGTATACCTGGGCAAAGGAGAGGTCGGGGAGAGAAACTTACC
CGTCAGGCGTTACTCGTCCAATTTACGATTTTTTGTCTCTGATTTTTTTT
TAAGAAAAATTTGAATGCACCTATTAATAGACCTTTTGAGTTTTCCAAAG
CAGCCATTCTGATGCTTTCTGTATTACACATAACACTACCTGGTACATAC
CAATCGTGGGTGTGGGAAAAAAGAGAGGCGCACAAAAATTGGCCCATGGA
GATACCTTAAAAAGCAGCACCGTTACTCTAACTACTGGCTCTGTGCCAGC
GGCCTCTCGGCAATGAACGCCGTCGGCCTGATTTCGCGGTTGACGGTATA
TGTGGACGCCGTCGCGAAAAGTGGGAGGAATCCCGTGAGTAAGGACCAGG
TTCAGCCCGAGTGTGGAGAATGAGCGGGCTGACGCAAGGCGGGACGGCCA
AACCCGTCTCTCGAGAATGTATTCTCAGGCACGAACGGGGGCAGAGAAAA
TATTATTTTCCCTGTTCAGCTGACCACGAGCAGGATTGGCAACCATACCC
GGTTGATCCATACTGTGCCGAAAGAAAGTATTAGCCATACATTGTTCCTG
CGATTGGTCTATGACAGAGCAATATATTGTCAGTCTTACTTTTCATCGCG
ATTCAAGTTCATCATGTCTACCTTGCCTTTGGATTTTGGTTTCTCTAGAT
GCCCTTGCGCGTTCTTCTACAGCAATATACTGTATGAGCTACCCTACAGC
TGCTGTGAAAGTGTTATACCCAAGCCCACCGTCGATGTGAGCTGCTACGT
TGAGGAGAACAACTGCTGTGTTGTGTGGCGGATCGCACGGTTTCTTTTCA
CCGAAGGAGTTCTTGTTGATGAGGCGTGATTGTATCATGGGCAGGCAAGG
GCGGGTGGACCCAACCGCGCTTCTGTATTACACCCTATCTTTATATCTGT
CTCGACAGCAGTATGCTCCTGCTTCCCTTTCTCCAGACAACCGACAGCTG
TGTCAGCCTACTCTGCTGCTGCAAATGTCGGGAACTATGGGAGATGACTG
GAGTAACGTTGGGGTGCGACATGGGCCCAAAGGAGTTTTTTGCCTCCCAG
TTACTCACTTCTTGCTTCTGATATCTGCCTTCTATCAACATGCCCTCTTC
TTACCAATAGGGGGTGTGGAAAAAGAGAGGCGCACATTAATTGGTCATAG
TCCATGGTGAACTGCAAAATGGCAGCACCCGTTACTGGAACTACCTTGAG
GACTTCTGACCCTTTGCTCATTCGTACGCAATTTCGTGACCCGACGAATT
CGGCACTGACCCGATGGCGTATGGCGATTTAAATAAATAAATAGACGCCG
CCGCGAAAAGTGGGAGGAATCCCGTGACGTGAGTAGGCACCAGATTCAGC
CTGAGTATGGAGAATGAGCAGGCTGACGCGGGACGGGACGACTGAACCCG
TCTCCCGAGACCAAATTCTCAGGCGCGTCCGGGAACAGGGAATATTCATC
CTCCCTTTTCAGCTGACCACGAGCAGGATTGGTAGCCTTACCCGGTTAAT
CCACACTCTTGCTATATGCGATGACCATACCCAGTCTGCCTGTATCGCAC
ATGTCAACTGTACCAAAGATAGTATAATGAGTGTGGGAAAAGAGGGGCGC
ACAAAAAGTGGTCCGTTGGGTTTCCTGAGTAGGGAGCACCCGTTACTCGA
GCTACCCTGATGACAAAGAGCCTAGTGCTGGCAGACTCTTAGCGGTGTAC
ACCATTGGTACGCAATGGCGCGACCCGACAAACTCGAGACTGACTCGATG
GTGCTTGACAGCATAGATGGACGCCGTCGCGGAAAGCAGGGGGACCCGTG
AATAATGCACCAGATTCAGCCTGAGTGTGGAGAATGAGCGGGCTGTATAT
ATAAATATATATAGCAGAATCTGACCACGAGACCCAATTATCCGGCGCGA
ACGAGGACATAAAAATATAGATTAAAAAACGGTTAGCTGACCACGAGCAG
GATTGGCAACCATACCCGGCCAATCCATACTCTCCTGAATGTGCTGGCCG
TACATACATACGTACATGCTCTCCAATTTCTTGGGAGTAAAGTCGTACCA
GTATGGCCTATCACATTCGGGAACCTTGATGAAAGTGGCATCGTGGCCAG
AGTGAACATAGGGCAGCACCACCCCAGCCACATCCATCTCTTGAATACCT
GTCCCACCAGCGGATTACAAAGGGTGTGGAAAAAAAGAGGAATATTAAAA
GTTGGTCCATGGTAAAACCTGAATAGGCATCATCCGTTACTGGAGCAACT
ACCTTGAGGACTTCTGGCCCTATGCCAGTGGACTTTCGGCAGTGAGCGCT
ATCGATACTCAATTGCGTGACCCGATAAACTCGGGACTCACCCGATGGCG
GTTGACGGTATGTGCGGACGCCGTCGCGGAAGTCGGGACGAATCCCGTGA
GTAAGCACCAGATTAAGCCTGGCTGTGGAGAATGATCAGGATGACGCGAG
AGGGGACAGCCGAATCTGTCTGGCGAGACCAAATTCTTAGCCGCGAACGG
AGACAGGAGAAAAAAAAACATGTTTTCCCTGTTCAGCCGACCACGAGAAG
GATCGGCAACCATACCCGGTTGATCCATACTCTGCTGAAAGTACATACTG
CGCCGTGGGGGTGTTAAGAGGGTTGACCCGAGAACGTTTTTCGGAATGTG
TTCTGTCGGCGCTGCTGATCGAACTCGGCGAGACCCAGATGTTGTCATTT
TTCAACCAACTTGGTCGAGGTGCCAGCCCCGCACGCGCCGGTGTGCAAGC
CACACAGGGGAAACAAAATTCATGACACCGTTCGGCGGAGGTAACGTTGC
GGGGTCTAGGCTCCAAATGAAGCAAGAGAGAACCTAGGCGCGAGATCCCC
GGTGGGCAGTTTCTGAGGCACGCAGTCAAGTTCAGTATAATCATCCTACA
ACTTCGGTTAACCTCGGACTAAACAAATCGTGGCAGGCGATCGCGCGAGG
GAACCCGGTGGTGTTCTTTGACGTTACCATCGGAGGTGCCCCGGCGGGCC
GCATCAAGATGGAGCTCTTCAAGGACACCAGCCCCAAGACGGCGGAAAAC
TTCCGGCAGTTCTGCACCGGGGAGCACCGCCGGGAGGTGCGACTGTATGT
AGCCCATGGATGACAAATATTCCGAGATGCTATTGATAGTGCAGGACTGT
ACATAGCTCTAAAAATCCCTTGTTTTATGCTTTGTACCTTGTGTCGCCCC
GGTAGCTCAGTAGGTACCTCGTAACCTTCTGACACGTTGGGACGTGAGTT
CGATTCCGGCAAACGGGATTTTTCTCACTAAAAACTAAAAAACAAGATAA
AAATGCCCAACGGGTGGAGAACGATTAACTCGTTATAATAGTACACAAAA
TTCGACTTCACGGTCGACGAGGGAAAGGAATGGCTGGATCCTTCTCGCGA
TAAAAATAAAGGCACGCACCGCAGAAGGAAGGTGGATGAGAAATCCTGTG
TGACCTTCCTCCTGTGTAACCCCGGCTGGTACGTCCAACAACTTGATGTC
CAGAATGGATGGGAAGAAAACACACACACACACCTTGTGTAGTGTGCGGT
CATTACCCTTTTTTTTTGTTTGTACGTATGTGTGTGCGTGTGTGTATCTT
TATTTATTAAATTGCGCATAACCGTGCAATCCGGCCGTGTCATCTTAGTC
ATTCCATGCCACTCGCATCGGTCCTCCCAAGGGGGGATCATATGATACTT
AATACGAAAACCTCTCATCGGTTGTGACGAAGGGTATAAACTATCTCTAC
TTGTACAGTGTGTGTGCGACATGTATTTTATGTTTGCCGCGCTGAATTGA
GAATCGAGAACGACGGGCGAGTGTGTATTTTGATCAGACCATATGGGCAG
CAGCAGTAAGAAGTTATAATGCGTGTGCCGCTGTTACTCCCGGGGGGCAG
GCAGGCCTGCACGCCCCTCAAGGCACCGTGTCGACTCCGCCTGGTTGGCG
TCTGCGTTCCGCTGTGCCCTCCCTTTTCTTTATTGCTTACGATATTTTGC
ATTTTTTTTCCGTGTTGATGGTCGTTATACACTATCGCTGCGCGATAGCC
ACACGCGCGCCCTCCGCACGCCCGTCAGCTCCCTGTCCTAACGTGGCGCG
TTCGTCGGAAGCATCGAAAATCGTGTCGCGCATGGCAGTTGAAACTCTTA
TCAGGTCGAGGAGACGTCGAGAAATGTGAATGGGGTCTCCACCCAGACCT
CGACGGGGCGCCTCAGACGTTTTCGGAATGGGGGTCAAATCGAGCATCAT
TCACTTCGAGTGTGGGACTGGCGCGCCGCTGACCGCTTCGTGTGTGCTCG
CCGCGACAGGGAATACCGGCGGGATACAAGGGCTCGCCGTTTCACCGGGT
CATCAAGGACTTCATGCTCCAGGGAGGAGACTTCGTGAAGGGGGACGGAA
CGGGCAGGATGAGCATCTACGGGGAAAAGTTCGGCGACGAGAACTTCGAC
CTCCGTCATACAGGTGTCCAAGCGCCCACGATCCGACTCTCCCTCCCGTA
TTGTTGTCTCCGCACGGAAATGTCTTGTGGAGATCGCCGTGCAGGATGTT
CATTTTTATTTATTTATTTATTTCCGTTCATCTGCAGCGTCGTCGTCCAG
ACATTTTTTTACGCGACATACATACACCCTTACGAGAACAAAGGAATCCT
CGTCCGCCGTGCCTCGACATGTTTCTGCCTCAACAGGACCTGGGCTTTTG
TCGATGGCGAACAGCGGGCCCAACACGAATGGGTGTCAGTTTTTCATTAC
AACGGCGAAGGCGGATTGGCTAGACGGCCTGCACGTTGTCTTCGGCAAGG
TATAATGTACCGGTCCCGAATTGCTGTACTGTATACGAGAGTGCCGAATG
CTGGATATACAAGAGTGCCGAAAAGCTCTGTACAAACTGTGCGCGCAATA
TCTCTGAAAACAGGATCCAGTACTCTGTAGCTCTCGATACACGCATCAGC
TTTTTATCATCAAGCCGTGCAAGGCTGAGCTCGGAGAAGCGATAGGTTGT
GAAAATATTTCACATGATCAGAACAACGGTAGATAGACCCTGGCCATCCT
ATGTTCCCTAACATCTGCCCACGCGGTTTGGAAGAGGCCGAACGTCGAAT
AGATTTTTATGTACGCGAGTGCCTCGGAGGTCGCCTGGCGTAGCTTTTGG
GCACCTCAATCGATCGCCTGTAATGTGTGCTGGCCCTTGGAGGGGAGGCA
CTTATTGATAGGTTATATCCTCGCCCCTGCGTTCGCGCGATTTCCCTCAG
GTGCTGGACCCGTCCTCCATGCTGACCGTGCGGAAGGTAGAGAACGTCTC
AACCGGGGCAAACAACAAGCCCCGATTAGCCGTCGTCGTACAGGAGTGCG
GAGAGCTGTGAATAGGGTTGGGTGGGGATTGGGGTGGGAGGGTCGTCTCC
TTCTCGTACTACTGCCGTTATTTTGCTACAGCATAAAATCGAGGGGGTTC
ACCGTAGTAAGTTATGTGGAGGTTAAGACGAGAGAGTGCCTCGCCACGCG
GCGTTGGAAGAATCGCCTATTATTATCAATAGGTTTATTTTTACTTTTGA
AGATTCGTCGCCCCGGCCATCACACCCCCGTGCGTCTCGCAACTCGATTA
TTATTAATAGTCAAGTGTTTAAAAGAAAAATCAGAACGCGCCTATACCTT
CGGAGCATCCCCCAGTCAGGAGGAAAAAATGTCAAAACGTTCCCCATGAC
TCCCCCCGTAATATTGGACGTTTTCCTGACGACGTATCTTCCAAGAGTAA
TCTGGATCCCCATGACTCCCCCCCGTAATATTGGACGTGTTGCTGACGAC
GTATCTTCCAAGAGTAATCTGGATCCCCATGACTCGCCCCCGTAATATTG
GACGTTTTGCTGACGACGCATCTTCCAAGAGTAATCTGGATGAAAAGCTA
AAGGACCCTTTCGATGCTTATACACTAATATTACACTATTATAGGAAGGA
ACTAAACAAACGAGC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig127:672625..679689-

>mRNA_F-serratus_M_contig127.2013.1 ID=mRNA_F-serratus_M_contig127.2013.1|Name=mRNA_F-serratus_M_contig127.2013.1|organism=Fucus serratus male|type=CDS|length=1116bp|location=Sequence derived from alignment at F-serratus_M_contig127:672625..679689- (Fucus serratus male)
ATGGCCTCGCCTGATCCGGCCATCGCCGAGATGGCCTCGCCTGATCCGGC
CATCGCCGAGGCGATCGCGCGAGGGAACCCGGTGGTGTTCTTTGACGTTA
CCATCGGAGGTGCCCCGGCGGGCCGCATCAAGATGGAGCTCTTCAAGGAC
ACCAGCCCCAAGACGGCGGAAAACTTCCGGCAGTTCTGCACCGGGGAGCA
CCGCCGGGAGGCGATCGCGCGAGGGAACCCGGTGGTGTTCTTTGACGTTA
CCATCGGAGGTGCCCCGGCGGGCCGCATCAAGATGGAGCTCTTCAAGGAC
ACCAGCCCCAAGACGGCGGAAAACTTCCGGCAGTTCTGCACCGGGGAGCA
CCGCCGGGAGGGAATACCGGCGGGATACAAGGGCTCGCCGTTTCACCGGG
TCATCAAGGACTTCATGCTCCAGGGAGGAGACTTCGTGAAGGGGGACGGA
ACGGGCAGGATGAGCATCTACGGGGAAAAGTTCGGCGACGAGAACTTCGA
CCTCCGTCATACAGGGAATACCGGCGGGATACAAGGGCTCGCCGTTTCAC
CGGGTCATCAAGGACTTCATGCTCCAGGGAGGAGACTTCGTGAAGGGGGA
CGGAACGGGCAGGATGAGCATCTACGGGGAAAAGTTCGGCGACGAGAACT
TCGACCTCCGTCATACAGGACCTGGGCTTTTGTCGATGGCGAACAGCGGG
CCCAACACGAATGGGTGTCAGTTTTTCATTACAACGGCGAAGGCGGATTG
GCTAGACGGCCTGCACGTTGTCTTCGGCAAGGACCTGGGCTTTTGTCGAT
GGCGAACAGCGGGCCCAACACGAATGGGTGTCAGTTTTTCATTACAACGG
CGAAGGCGGATTGGCTAGACGGCCTGCACGTTGTCTTCGGCAAGGTGCTG
GACCCGTCCTCCATGCTGACCGTGCGGAAGGTAGAGAACGTCTCAACCGG
GGCAAACAACAAGCCCCGATTAGCCGTCGTCGTACAGGAGTGCGGAGAGC
TGTGAGTGCTGGACCCGTCCTCCATGCTGACCGTGCGGAAGGTAGAGAAC
GTCTCAACCGGGGCAAACAACAAGCCCCGATTAGCCGTCGTCGTACAGGA
GTGCGGAGAGCTGTGA
back to top