mRNA_F-serratus_M_contig879.20135.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig879.20135.1 vs. uniprot
Match: A0A6H5KJA8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA8_9PHAE) HSP 1 Score: 279 bits (714), Expect = 1.660e-81 Identity = 142/262 (54.20%), Postives = 170/262 (64.89%), Query Frame = 3
Query: 2475 SNLGGLFRRPGVVYPIHPTGHMRVPRPGGRKKFGSDVVEGGRRPVAR-----------------------------------FIVQGKLESIRRDYEGLFSCLEEMCLSGRGDFEIEAVGSSGSMLNELDRHPCTSARYKEGRDLRYSDFYSRISAGHFVVTATAGHDYEFDRATSSVPTALLLERPLVMSSALLDAYPCLKNSRVHSMVANDDLCLNLQAAYDLTQADYDEMELEARDCKLRMWKQTRETVAEMVSGWVVD 3155
S G LFRRPGVVYPIHPTGH+R+PRP ++ F R R F+VQG ++S RR+Y L CLE MC +GR ++++ AVG+ G + +++ R C R E R L Y +FY+ ISA HFVVTA AGHDYE+D+ATS+VPTALLLERPLV+SS LLDAYPCL+ SRVHSMVANDDLCLNLQ AYDLT +YDEMELEARDCKL MW+ RETVA M SGW +D
Sbjct: 6 STFGALFRRPGVVYPIHPTGHLRLPRP--KRPFAGQQQRWRRHLSGREXXXXXXXXXXXXXXXXXXXXXXXXXXXXREEDVVFVVQGNMQSHRRNYPELTRCLEAMCSTGRDNYQLVAVGARGDLPDDVRRMQCVEQRTTEWRHLEYPEFYANISAAHFVVTAAAGHDYEYDKATSTVPTALLLERPLVISSTLLDAYPCLRKSRVHSMVANDDLCLNLQTAYDLTTEEYDEMELEARDCKLEMWRHARETVAGMASGWTLD 265
BLAST of mRNA_F-serratus_M_contig879.20135.1 vs. uniprot
Match: D8LSI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI2_ECTSI) HSP 1 Score: 276 bits (705), Expect = 1.530e-74 Identity = 255/826 (30.87%), Postives = 343/826 (41.53%), Query Frame = 3
Query: 261 QTLIDTADTHVFHLDLHLRRRSPSNSSPNNTSSVHWFEGFGETMQAGSAAAAVATLSHPIRRMLSFLLKEEVGLKEALLWTKGQGE---------QGYQILDNYLVRVLAGQSTWELPPGAVGEAEFHNAKIALGKFEVLLRADCLAVDLPLLGPYIGRVFSAHNALEITSAGSDAEVSP---VLTPGPIAESLIRRNRWDLQLWDYAESLIMSRSTTLDSYLCSKQTWATKERQPGTGRRAAVFNSPDFHATSLAMFSCVLVSWGFHVTAIVQERSVLLLIEEISHVFKSST*LVSLLRTEARF*DSSVLRTINSTFPNLEISGGLRPDEH*RQGRSFYSPNTEKS*SLLHTKRCFLPAHTENIPWYCTTRPLLSFYVQKPQVGFEELLPCPQKIISLEHAITSRGSYQMVNSSVSQSLGLPAWTPEGQDGESGPLKLEAELAINVDTRIQLFDVSVLCTIFKDLEVLFSTRHPMDPRLVDALLWNPKVSLGSEKLFVAS*GVTGAF*PSLSLRSCITTTHDRY*GVRLSI*DRQP*VRMLSTL*SYKGSSNTVDVLNVILLKVAEGLHSALLSV*MDIRPGGAFPLPICLYLPYYSDSAYKSVSQKISRHG----------EVFCALLSETSRRLFTIFAMKAGPERADDLGLDSNSLIAGQVPG*RCPPVDQVTIWNVHSVERAL-ADGSVPPEAQDFARETPSADGRG-----PPSTFLTVFGEHVETWERWLEQAYEGWGERAE---------------------REPEGHEEMHP------------ERNHQGSNLGGLFRRPGVVYPIHPTGHMRVPRP 2555
+TLID D++++HLDL +++ ++++ T+ WF+GFG G A T+ HPI+R+L L E VGL+E + W + G+ QGYQ LDNYLVRVLAG+S W+LPPG VG++E A+IALGKFEVLLRADCLAVDLPLL PY+ + A + D S L G L+R NRWDLQLWD+A L+ SRSTT + YLC A ++R PG GRRA V+NSP FH T +AMFSCVL+S GF VTA+V+E H+ +V+L LR + + E L E S + E+ +++ QVG E+ T RG + + G PA +G DG+ G L + E + R + + G+ + R +T + D G R +G + + + + GL A LS + + GG D + V R G V C +++ + L + + P AD L D VD V+IWNVHSVE A +D +PP DFAR PS+ RG PP TFLT++GE WERW E+AYEGWG + EG + S G LFRRPGVVYPIHPTGH+R+PRP
Sbjct: 39 RTLIDGTDSNIYHLDLLVQQPYDASTT---TAQPPWFDGFG-----GRDGVAAVTVGHPIQRILLHLRAEGVGLEEGMSWPERGGKRADASSSYRQGYQQLDNYLVRVLAGKSAWDLPPGRVGKSELQAARIALGKFEVLLRADCLAVDLPLLQPYLAKAVPAAQVADAARETEDLLESGEAHYLVFGKEGGKLLRDNRWDLQLWDFAHKLVESRSTTAEGYLCGSSASARRQRMPGDGRRAVVYNSPSFHITGVAMFSCVLMSLGFDVTAVVKEPGA-----GFEHLLPCPDRVVAL--------SEHYLRDLPGEILDEEAVAALSLPE------SLTAEQEEER-------------------------------LRQQQVGGEQ-----------GGYPTGRGGQKRRGGEAGRRRG-PALGGDG-DGDLGALDVGVEEGSD---RQGSRAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDVQGTGR------------------RRELTGSEDGG-GPRAV---------------DGRGGAGQREGGDAEERHGSRGLGGAELSGRVSVAAGG--------------DG--RQVEGGEGRGGGRGRGGPFDLSVLCTAVNDVNHLLKATYPVD--PRLADALLWD----------------VD-VSIWNVHSVEGAFRSDHRMPPAVDDFARGVPSSSERGGGGRTPPLTFLTLYGE----WERWSEEAYEGWGXXXXXXXXXXXXXXXXXXXXXXXXGQGAEGXXXXXXXXXXXXXAGYLDDMERGNSTFGALFRRPGVVYPIHPTGHLRLPRP 717
BLAST of mRNA_F-serratus_M_contig879.20135.1 vs. uniprot
Match: D8LSI3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI3_ECTSI) HSP 1 Score: 238 bits (608), Expect = 1.350e-68 Identity = 112/174 (64.37%), Postives = 136/174 (78.16%), Query Frame = 3
Query: 2634 LESIRRDYEGLFSCLEEMCLSGRGDFEIEAVGSSGSMLNELDRHPCTSARYKEGRDLRYSDFYSRISAGHFVVTATAGHDYEFDRATSSVPTALLLERPLVMSSALLDAYPCLKNSRVHSMVANDDLCLNLQAAYDLTQADYDEMELEARDCKLRMWKQTRETVAEMVSGWVVD 3155
++S RR+Y L CLE MC +GR ++++ AVG+ G + +++ C R E R L Y +FY+ ISAGHFVVTA AGH YE+D+ATS+VPTALLLERPLVMSS LLDAYPCL+ SRVHSMVANDDLC+NLQ AYDLT+ +YDEMELEARDCKL MW+ RETVA M SGW +D
Sbjct: 1 MQSHRRNYPELTRCLEAMCSTGRDNYQLVAVGARGDLPDDVSAMQCVEQRTTEWRHLEYPEFYANISAGHFVVTAAAGHGYEYDKATSTVPTALLLERPLVMSSTLLDAYPCLRKSRVHSMVANDDLCVNLQTAYDLTREEYDEMELEARDCKLEMWRHARETVAGMASGWTLD 174
BLAST of mRNA_F-serratus_M_contig879.20135.1 vs. uniprot
Match: A0A6H5KKJ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKJ1_9PHAE) HSP 1 Score: 248 bits (634), Expect = 7.490e-66 Identity = 140/279 (50.18%), Postives = 175/279 (62.72%), Query Frame = 3
Query: 261 QTLIDTADTHVFHLDLHLRRRSPSNSSPNNTSSVHWFEGFGETMQAGSAAAAVATLSHPIRRMLSFLLKEEVGLKEALLWTKGQGE---------QGYQILDNYLVRVLAGQSTWELPPGAVGEAEFH----NAKIALGKFEVLLRADCLAVDLPLLGPYIGRVFSAHNALEITSAGSDAEVSP---VLTPGPIAESLIRRNRWDLQLWDYAESLIMSRSTTLDSYLCSKQTWATKERQPGTGRRAAVFNSPDFHATSLAMFSCVLVSWGFHVTAIVQE 1049
+TLID D+ + HLDL +++ P ++SP T+ WF+GFG G A T+ HPI+R+L L E VGL+E + W + G+ QGYQ LDNYLVRVLAG+S W+LPPG VG+ E A+IALGKFEVLLRADCLAVDLPLL PY+ + A + D S L G L+R NRWDLQLWD+A L+ SRSTT + YLC T A ++R PG GRRA V+NSP FH T +AMFSCVL+S GF VTA+V+E
Sbjct: 39 RTLIDGTDSSIHHLDLLVQQ--PYDASPT-TAQPPWFDGFG-----GRDGVAAVTIGHPIQRILLHLRAEGVGLEEGMSWPERGGKRADASSSYRQGYQQLDNYLVRVLAGKSAWDLPPGRVGKTELQVGIPAARIALGKFEVLLRADCLAVDLPLLQPYLAKAVPAAQVADAARETEDLLESGEAYYLVFGKEGGKLLRDNRWDLQLWDFAHKLVESRSTTAEGYLCGSSTSARRQRMPGDGRRAVVYNSPSFHVTGVAMFSCVLMSLGFDVTAVVKE 309
BLAST of mRNA_F-serratus_M_contig879.20135.1 vs. uniprot
Match: A0A482SBI1_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SBI1_9ARCH) HSP 1 Score: 75.9 bits (185), Expect = 6.210e-11 Identity = 61/228 (26.75%), Postives = 97/228 (42.54%), Query Frame = 3
Query: 2571 FGSDVVEGGRRPVARFIV-QGKLESIRRDYEGLFSCLEEMCLSGRGDFE----IEAVGSSGSMLNELDRHPCTSARYKE----GRDLRYSDFYSRISAGHFVVTATAGHD--YEFDRATSSVPTALLLERPLVMSSALLDAYPCLKNSRVHSMVANDDLCLNLQAAYDLTQADYDEMELEARDCKLRMWKQTRETVAEMVSGWVVD*DCRKARTKLREPGRDS*ASSC 3221
G VEG R +V G + RRDY GLF+C++E+ S + + V + S L D ++ DL + + ++ +FV+ + Y +R +S+VPTAL + PLV+ A L Y CLK+S +H+ VA C +++ A L+ AD + M E C+ + + ++ R A L EP S C
Sbjct: 48 LGESKVEGTLNNNTRLLVLPGTIRYNRRDYTGLFTCVDEISKSANDSTQKSLNFKVVVTGRSYLKAADGRVYIPEHLRQLIEIQADLPLQSYLTLLAQANFVLLFANNNQLGYNTNRISSTVPTALGVTTPLVLPQATLSLYACLKSSSMHNRVAGKTNCDSMKNALSLSHADAERMRQETALCRQSLLDDAYMKLRNLL---------RLAEPSLEEPQHKSIVDQC 266
BLAST of mRNA_F-serratus_M_contig879.20135.1 vs. uniprot
Match: A0A482SHX3_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SHX3_9ARCH) HSP 1 Score: 77.4 bits (189), Expect = 9.610e-11 Identity = 51/183 (27.87%), Postives = 90/183 (49.18%), Query Frame = 3
Query: 2613 RFIVQGKLE-SIRRDYEGLFSCLEEMCLSGRGDFEIEAVGSSGSMLNELD-----RHPCTSARYKEGRDLRYSDFYSRISAGHFVVTATAGHDYEFDRATSSVPTALLLERPLVMSSALLDAYPCLKNSRVHSMVANDDLCLNLQAAYDLTQADYDEMELEARDCKLRMWKQTRETVAEMVSG 3143
RFI+QG L RRD+ LF+C+ E + R D E+ +G ++ L + T ++ + Y F+ +S+ + + + YE R TSS+PT+L+ P+++ + LL Y CL+N VH + D C +++A L +M E C ++ ++R T+ ++V G
Sbjct: 213 RFILQGILTPGKRRDFNRLFACMIE--IKRRHDIELVLIGKVATLGANLTIPLKLSNITTVVKWPD-----YLGFFRNVSSADYAILFSKFDFYEHGRITSSIPTSLVSNLPIILPNKLLSDYACLRNQYVHRATSMADDCSSVKAVLSLRHERQQQMRNEVAFCVKQLLIESRATLHDIVFG 388
BLAST of mRNA_F-serratus_M_contig879.20135.1 vs. uniprot
Match: A0A482SI13_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SI13_9ARCH) HSP 1 Score: 70.5 bits (171), Expect = 4.680e-10 Identity = 39/100 (39.00%), Postives = 57/100 (57.00%), Query Frame = 3
Query: 2796 RDLRYSDFYSRISAGHFVVT-ATAGHDYEFDRATSSVPTALLLERPLVMSSALLDAYPCLKNSRVHSMVANDDLCLNLQAAYDLTQADYDEMELEARDCK 3092
R + + FY I+ F+VT A ++Y RA+SS+PTA++ E PLV+++ LL+ Y CL +H VA+ D C L+ A LT + M E R CK
Sbjct: 15 RAVAHPYFYGAIARADFLVTFANPAYEYNITRASSSIPTAVMTEVPLVLTTDLLNKYDCLYGGSIHRRVADTDDCKALKNAIQLTDQERKTMREEIRRCK 114 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig879.20135.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig879.20135.1 >prot_F-serratus_M_contig879.20135.1 ID=prot_F-serratus_M_contig879.20135.1|Name=mRNA_F-serratus_M_contig879.20135.1|organism=Fucus serratus male|type=polypeptide|length=311bp MVPTPSTVVSSIVFAMAASVVVCTDTSVVQTLIDTADTHVFHLDLHLRRRback to top mRNA from alignment at F-serratus_M_contig879:12498..42173- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig879.20135.1 ID=mRNA_F-serratus_M_contig879.20135.1|Name=mRNA_F-serratus_M_contig879.20135.1|organism=Fucus serratus male|type=mRNA|length=29676bp|location=Sequence derived from alignment at F-serratus_M_contig879:12498..42173- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig879:12498..42173- >mRNA_F-serratus_M_contig879.20135.1 ID=mRNA_F-serratus_M_contig879.20135.1|Name=mRNA_F-serratus_M_contig879.20135.1|organism=Fucus serratus male|type=CDS|length=1866bp|location=Sequence derived from alignment at F-serratus_M_contig879:12498..42173- (Fucus serratus male)back to top |