mRNA_F-serratus_M_contig879.20137.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig879.20137.1
Unique NamemRNA_F-serratus_M_contig879.20137.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig879.20137.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig879contigF-serratus_M_contig879:42556..42949 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size394
Cds size357
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932557.7754316-CDS-F-serratus_M_contig879:42555..429121622932557.7754316-CDS-F-serratus_M_contig879:42555..42912Fucus serratus maleCDSF-serratus_M_contig879 42556..42912 +
1690964364.6755524-CDS-F-serratus_M_contig879:42555..429121690964364.6755524-CDS-F-serratus_M_contig879:42555..42912Fucus serratus maleCDSF-serratus_M_contig879 42556..42912 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932557.793815-UTR-F-serratus_M_contig879:42912..429491622932557.793815-UTR-F-serratus_M_contig879:42912..42949Fucus serratus maleUTRF-serratus_M_contig879 42913..42949 +
1690964364.6872103-UTR-F-serratus_M_contig879:42912..429491690964364.6872103-UTR-F-serratus_M_contig879:42912..42949Fucus serratus maleUTRF-serratus_M_contig879 42913..42949 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig879.20137.1prot_F-serratus_M_contig879.20137.1Fucus serratus malepolypeptideF-serratus_M_contig879 42556..42912 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig879.20137.1

>prot_F-serratus_M_contig879.20137.1 ID=prot_F-serratus_M_contig879.20137.1|Name=mRNA_F-serratus_M_contig879.20137.1|organism=Fucus serratus male|type=polypeptide|length=119bp
PITRYRPLDCSRILPWLNVRPCPTLGSARGSAIFFPTSVPQFSSQLLYGI
NFPRNCVPRFFINVLSLTLTMLLCTSSCPLSLRSLVSGYECGRVFPAGVG
PDSPSRGAANWLPSRFSL*
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mRNA from alignment at F-serratus_M_contig879:42556..42949+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig879.20137.1 ID=mRNA_F-serratus_M_contig879.20137.1|Name=mRNA_F-serratus_M_contig879.20137.1|organism=Fucus serratus male|type=mRNA|length=394bp|location=Sequence derived from alignment at F-serratus_M_contig879:42556..42949+ (Fucus serratus male)
CCGATTACGCGGTACCGACCTCTAGACTGCTCTAGGATCCTTCCTTGGCT
CAACGTCAGGCCATGTCCGACTCTAGGAAGCGCCCGTGGCTCTGCAATTT
TCTTCCCAACTTCTGTACCGCAGTTTTCCTCTCAACTGCTGTACGGCATC
AATTTTCCTCGCAACTGTGTACCACGATTTTTCATCAATGTGTTGAGTTT
GACTTTGACGATGTTGCTCTGTACATCATCGTGCCCTCTCTCCCTCCGAA
GCCTGGTTTCGGGGTATGAGTGTGGGAGGGTCTTTCCGGCGGGTGTAGGG
CCGGACTCACCCTCAAGAGGTGCAGCCAACTGGCTGCCGTCGCGATTCAG
CCTGTAGGTTGAGACGCGGCGGCGGTATGGTTGGCTGAAGATGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig879:42556..42949+

>mRNA_F-serratus_M_contig879.20137.1 ID=mRNA_F-serratus_M_contig879.20137.1|Name=mRNA_F-serratus_M_contig879.20137.1|organism=Fucus serratus male|type=CDS|length=714bp|location=Sequence derived from alignment at F-serratus_M_contig879:42556..42949+ (Fucus serratus male)
CCGATTACGCGGTACCGACCTCTAGACTGCTCTAGGATCCTTCCTTGGCT
CAACGTCAGGCCATGTCCGACTCTAGGAAGCGCCCGTGGCTCTGCAATTT
TCTTCCCAACTTCTGTACCGCAGTTTTCCTCTCAACTGCTGTACGGCATC
AATTTTCCTCGCAACTGTGTACCACGATTTTTCATCAATGTGTTGAGTTT
GACTTTGACGATGTTGCTCTGTACATCATCGTGCCCTCTCTCCCTCCGAA
GCCTGGTTTCGGGGTATGAGTGTGGGAGGGTCTTTCCGGCGGGTGTAGGG
CCGGACTCACCCTCAAGAGGTGCAGCCAACTGGCTGCCGTCGCGATTCAG
CCTGTAGCCGATTACGCGGTACCGACCTCTAGACTGCTCTAGGATCCTTC
CTTGGCTCAACGTCAGGCCATGTCCGACTCTAGGAAGCGCCCGTGGCTCT
GCAATTTTCTTCCCAACTTCTGTACCGCAGTTTTCCTCTCAACTGCTGTA
CGGCATCAATTTTCCTCGCAACTGTGTACCACGATTTTTCATCAATGTGT
TGAGTTTGACTTTGACGATGTTGCTCTGTACATCATCGTGCCCTCTCTCC
CTCCGAAGCCTGGTTTCGGGGTATGAGTGTGGGAGGGTCTTTCCGGCGGG
TGTAGGGCCGGACTCACCCTCAAGAGGTGCAGCCAACTGGCTGCCGTCGC
GATTCAGCCTGTAG
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