mRNA_F-serratus_M_contig878.20133.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_F-serratus_M_contig878.20133.1
Unique Name	mRNA_F-serratus_M_contig878.20133.1
Type	mRNA
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig878.20133.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig878.20133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig878	contig	F-serratus_M_contig878:287870..289740 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-19
OGS1.0 of Fucus serratus male	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	3
Model size	1022
Cds size	471
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig878.20133.1	prot_F-serratus_M_contig878.20133.1	Fucus serratus male	polypeptide	F-serratus_M_contig878 287887..289206 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622932557.612093-UTR-F-serratus_M_contig878:287869..287886	1622932557.612093-UTR-F-serratus_M_contig878:287869..287886	Fucus serratus male	UTR	F-serratus_M_contig878 287870..287886 +
1690964364.6072102-UTR-F-serratus_M_contig878:287869..287886	1690964364.6072102-UTR-F-serratus_M_contig878:287869..287886	Fucus serratus male	UTR	F-serratus_M_contig878 287870..287886 +
1622932557.6864095-UTR-F-serratus_M_contig878:289206..289740	1622932557.6864095-UTR-F-serratus_M_contig878:289206..289740	Fucus serratus male	UTR	F-serratus_M_contig878 289207..289740 +
1690964364.6506524-UTR-F-serratus_M_contig878:289206..289740	1690964364.6506524-UTR-F-serratus_M_contig878:289206..289740	Fucus serratus male	UTR	F-serratus_M_contig878 289207..289740 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622932557.63129-CDS-F-serratus_M_contig878:287886..288007	1622932557.63129-CDS-F-serratus_M_contig878:287886..288007	Fucus serratus male	CDS	F-serratus_M_contig878 287887..288007 +
1690964364.6179914-CDS-F-serratus_M_contig878:287886..288007	1690964364.6179914-CDS-F-serratus_M_contig878:287886..288007	Fucus serratus male	CDS	F-serratus_M_contig878 287887..288007 +
1622932557.649625-CDS-F-serratus_M_contig878:288568..288801	1622932557.649625-CDS-F-serratus_M_contig878:288568..288801	Fucus serratus male	CDS	F-serratus_M_contig878 288569..288801 +
1690964364.6289384-CDS-F-serratus_M_contig878:288568..288801	1690964364.6289384-CDS-F-serratus_M_contig878:288568..288801	Fucus serratus male	CDS	F-serratus_M_contig878 288569..288801 +
1622932557.669983-CDS-F-serratus_M_contig878:289089..289206	1622932557.669983-CDS-F-serratus_M_contig878:289089..289206	Fucus serratus male	CDS	F-serratus_M_contig878 289090..289206 +
1690964364.6398256-CDS-F-serratus_M_contig878:289089..289206	1690964364.6398256-CDS-F-serratus_M_contig878:289089..289206	Fucus serratus male	CDS	F-serratus_M_contig878 289090..289206 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at F-serratus_M_contig878:287870..289740+
coding sequence from alignment at F-serratus_M_contig878:287870..289740+

protein sequence of mRNA_F-serratus_M_contig878.20133.1

>prot_F-serratus_M_contig878.20133.1 ID=prot_F-serratus_M_contig878.20133.1|Name=mRNA_F-serratus_M_contig878.20133.1|organism=Fucus serratus male|type=polypeptide|length=157bp
MGDSPTIPDDDCQQLGQDVHMLQNSLSSEKLTPAVVVYVYEYLLYISFLV
GLAGGLAGLWAVCGRNTLAAKLFLWSWLAGIALSIAVSFARGQIDGIGIP
VVPVFIVVHYCFLIYFTKVAWSYYAVLKARDIKASSGNGSGVELADIMDE
RSGAIA*

mRNA from alignment at F-serratus_M_contig878:287870..289740+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_F-serratus_M_contig878.20133.1 ID=mRNA_F-serratus_M_contig878.20133.1|Name=mRNA_F-serratus_M_contig878.20133.1|organism=Fucus serratus male|type=mRNA|length=1871bp|location=Sequence derived from alignment at F-serratus_M_contig878:287870..289740+ (Fucus serratus male)
AGTATGAAAGCAGCTGTATGGGCGATTCGCCCACCATACCCGATGATGAT
TGCCAGCAACTGGGGCAAGACGTTCATATGCTCCAGAACTCACTGAGCTC
GGAGAAACTTACACCAGCAGTCGTCGTCTACGTGTACGGTAAATGAAGAA
AGAGACGCACTTGAAGTAGGTCGTCCTCCGACCAGCCAACGAAACTGGAA
GAAGCATGGATGTGATACTCGGATAGAGTTGTATTAACCACGGGTGGTAG
ACGGGTGTGAGTTTCGTGGCACAATGCGGGTCTTGTGGAACAGGTTTCGA
CTCAACACATTTGCTGCGTAGTTTCGTGTATAACACGCATGCGGTAGTCT
AGATTCCCATCACTCGTGAAAACTCACTCCATTACTCTTCATGAGCTGTA
AGCTCGCATCCTGCTTAAAACGGACGTGGTTTAACGTTTTATACAAGCGT
CCAGAAGAAGTGTCTTCGCAGATCAAAGCAAATGAGCTGCTCATCTCCCA
GTGCTCACGCGAGAACAGGAAGCGGTCACGACGATGGCCAACATCTCAGC
CTTATTCTTGTGTAGGCTTACTGCACGTCAGTCTCTCCCTCCAATCGAGC
TTAATATGATGGCCACCGCACTCTCGTTGCACCATCACACGAACACGTGC
TATTTCACTTCTCGCTCTTTTGCTGCTGTCGACCGCTACTCTTCCGCAGA
ATACCTCCTGTATATCAGCTTTCTTGTGGGCCTGGCTGGTGGTTTGGCCG
GCCTGTGGGCCGTTTGCGGCCGCAACACTTTGGCGGCAAAGCTCTTTCTG
TGGTCGTGGCTGGCAGGCATCGCGTTAAGCATAGCCGTGTCGTTTGCAAG
AGGACAGATCGACGGCATTGGCATACCGGTCGTACCTGTGTTCATTGTGG
TACATTATTGCTTCCTCATCTACTTCACAAAGGTATTCGACTTGTACGAG
TATGTCAGTGGGTATTAGGCGTCGTCGGTGGACGTTCGGAATCAAACATC
GAGTATGTATAACAGAGCGAACATAATACGTTTCAAGTGGTTGGCGTATT
AGGTGATTGGTTTATAGTAACACTCTTAGGACAATCGAGTAGGCCGTATC
TACCATGTCGAAGAAAATGCCTTATTACACCGTTCGCCGATCCAGTCGGA
TGTCGGCTTCAGGCTTCCCAACTGTAAAGTATCTCGTCACCTCGGCTGTT
GTTCTACCGTCGGCTGCCAGGTGGCTTGGTCCTACTACGCGGTGCTAAAA
GCACGCGACATCAAAGCTTCGTCTGGCAATGGTAGTGGAGTCGAGCTCGC
TGATATCATGGACGAGAGAAGTGGCGCGATTGCTTGAGACGCCGCGCGTC
CTGCTTTATGCGCGGAGGAGCAGGAAATGTTGAAAATGAGTACAACACCG
TACATTTTCGACGTGTTAAAGGAGTTTACAATATTATGCAAGATGTCCAG
TGAAATTGTTTTTGCGCGCCAGACGCCTCATGTAAAGCGTATTTCCTGAG
AAGCTGCTTGACTTTTCATACTCGAATCAGGGATGGCTTGCCTGGATTCA
AGGAACGTACATGCGGCAGATCTTTGGCCTGTGAGCCTCCGACTGTTGAA
ATAGCAAAGCTTTGAAATAATAAATGTTGTTGGGATAAGACATCTTCGTC
AGGCGCTTCCTTCGGATGAGAAACTACTGTATGTCGTACTCAAAGTTTGC
ACGTGGATCTTGTACAAAATGCACGACTGTTGATTACTCGTGGGGTCGAA
CCGACCGCGCTGCTTTGTTCCTGGTTCCGTTGATGTTTTCTAACATAACT
GGGAAAAATCACCCACTTATATGGTACTTTCAACAAACCCACTTCATATC
AATATTATAGTAGATTTGGGA

Coding sequence (CDS) from alignment at F-serratus_M_contig878:287870..289740+

>mRNA_F-serratus_M_contig878.20133.1 ID=mRNA_F-serratus_M_contig878.20133.1|Name=mRNA_F-serratus_M_contig878.20133.1|organism=Fucus serratus male|type=CDS|length=942bp|location=Sequence derived from alignment at F-serratus_M_contig878:287870..289740+ (Fucus serratus male)
ATGGGCGATTCGCCCACCATACCCGATGATGATTGCCAGCAACTGGGGCA
AGACGTTCATATGCTCCAGAACTCACTGAGCTCGGAGAAACTTACACCAG
CAGTCGTCGTCTACGTGTACGATGGGCGATTCGCCCACCATACCCGATGA
TGATTGCCAGCAACTGGGGCAAGACGTTCATATGCTCCAGAACTCACTGA
GCTCGGAGAAACTTACACCAGCAGTCGTCGTCTACGTGTACGAATACCTC
CTGTATATCAGCTTTCTTGTGGGCCTGGCTGGTGGTTTGGCCGGCCTGTG
GGCCGTTTGCGGCCGCAACACTTTGGCGGCAAAGCTCTTTCTGTGGTCGT
GGCTGGCAGGCATCGCGTTAAGCATAGCCGTGTCGTTTGCAAGAGGACAG
ATCGACGGCATTGGCATACCGGTCGTACCTGTGTTCATTGTGGTACATTA
TTGCTTCCTCATCTACTTCACAAAGAATACCTCCTGTATATCAGCTTTCT
TGTGGGCCTGGCTGGTGGTTTGGCCGGCCTGTGGGCCGTTTGCGGCCGCA
ACACTTTGGCGGCAAAGCTCTTTCTGTGGTCGTGGCTGGCAGGCATCGCG
TTAAGCATAGCCGTGTCGTTTGCAAGAGGACAGATCGACGGCATTGGCAT
ACCGGTCGTACCTGTGTTCATTGTGGTACATTATTGCTTCCTCATCTACT
TCACAAAGGTGGCTTGGTCCTACTACGCGGTGCTAAAAGCACGCGACATC
AAAGCTTCGTCTGGCAATGGTAGTGGAGTCGAGCTCGCTGATATCATGGA
CGAGAGAAGTGGCGCGATTGCTTGAGTGGCTTGGTCCTACTACGCGGTGC
TAAAAGCACGCGACATCAAAGCTTCGTCTGGCAATGGTAGTGGAGTCGAG
CTCGCTGATATCATGGACGAGAGAAGTGGCGCGATTGCTTGA