mRNA_F-serratus_M_contig8772.20130.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig8772.20130.1
Unique NamemRNA_F-serratus_M_contig8772.20130.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig8772.20130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig8772contigF-serratus_M_contig8772:188..1093 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size906
Cds size474
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932557.29496-CDS-F-serratus_M_contig8772:187..6611622932557.29496-CDS-F-serratus_M_contig8772:187..661Fucus serratus maleCDSF-serratus_M_contig8772 188..661 +
1690964364.4865003-CDS-F-serratus_M_contig8772:187..6611690964364.4865003-CDS-F-serratus_M_contig8772:187..661Fucus serratus maleCDSF-serratus_M_contig8772 188..661 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932557.317651-UTR-F-serratus_M_contig8772:661..10931622932557.317651-UTR-F-serratus_M_contig8772:661..1093Fucus serratus maleUTRF-serratus_M_contig8772 662..1093 +
1690964364.4981933-UTR-F-serratus_M_contig8772:661..10931690964364.4981933-UTR-F-serratus_M_contig8772:661..1093Fucus serratus maleUTRF-serratus_M_contig8772 662..1093 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig8772.20130.1prot_F-serratus_M_contig8772.20130.1Fucus serratus malepolypeptideF-serratus_M_contig8772 188..661 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig8772.20130.1

>prot_F-serratus_M_contig8772.20130.1 ID=prot_F-serratus_M_contig8772.20130.1|Name=mRNA_F-serratus_M_contig8772.20130.1|organism=Fucus serratus male|type=polypeptide|length=158bp
TNQQAWRSERAELEARLLVTELLVAERCGLATTHLDSSNIEDLGTTPAER
SRFVLTYDRVEFPCLVLIYDRVGWESFSSRSWTFRHAHTSTDPTRLLRIR
LALPLALSLPPRFASSAKLIVGVSPRAMRLVGPFGVTAQFGTVGIYLLLL
DNWWVQF*
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mRNA from alignment at F-serratus_M_contig8772:188..1093+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig8772.20130.1 ID=mRNA_F-serratus_M_contig8772.20130.1|Name=mRNA_F-serratus_M_contig8772.20130.1|organism=Fucus serratus male|type=mRNA|length=906bp|location=Sequence derived from alignment at F-serratus_M_contig8772:188..1093+ (Fucus serratus male)
ACGAACCAGCAAGCATGGCGGAGCGAGAGGGCAGAGCTAGAAGCGAGACT
GCTAGTGACGGAACTGCTAGTGGCAGAAAGGTGCGGCTTGGCGACAACCC
ATCTCGACAGCTCCAACATCGAAGACCTGGGTACGACTCCCGCCGAACGT
TCTCGTTTTGTACTGACTTACGATCGTGTAGAATTTCCTTGCCTTGTACT
GATTTACGATCGTGTGGGCTGGGAAAGTTTTAGCTCACGAAGTTGGACGT
TTCGGCATGCACACACGAGTACAGACCCTACTCGGCTACTTCGTATCCGA
CTAGCTTTACCCTTGGCTCTCTCCTTGCCCCCACGATTCGCGTCCAGCGC
AAAACTCATTGTTGGTGTTTCGCCCCGAGCCATGCGGCTCGTAGGGCCTT
TTGGCGTGACTGCACAATTCGGGACTGTAGGGATTTATTTACTGTTATTA
GACAACTGGTGGGTCCAGTTTTGACGACAGCAACGGACGCAAGTCACGAG
GATGTGGAGAGTTTTAGCTCAACATGCTGTACGTTCCGACGCACGCACAC
GAGCACAGACCCTATTTGGATACTTTGTATCCGACTAGCTTTAACCCTGA
CTCTCTCTCGGCCCTCAGGACTTGCGCCCAGCGCAAGACTCGTGAGCTGT
ATTTCACCCCGGGGCCTATGGCCTTCGAGATTTTTTTCGTGTAACTGTAT
GCTTTGGGGCTGTAGGGAAAAATATTTATTATTCATAGACAAAAGATGGG
CCCACAGGGGAACTCAGCCTTAACGACAGCAACAGGCGCAAGATACGTCG
ACTTGGGGAGTTTTAGCTCAATAACGAGCACAGACCCTATTCGGTTACTT
CATATCCGATCAGCTTCAACCCTTACTTCCCCCTCGCCCTCAGGATTTGT
GCCTAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig8772:188..1093+

>mRNA_F-serratus_M_contig8772.20130.1 ID=mRNA_F-serratus_M_contig8772.20130.1|Name=mRNA_F-serratus_M_contig8772.20130.1|organism=Fucus serratus male|type=CDS|length=948bp|location=Sequence derived from alignment at F-serratus_M_contig8772:188..1093+ (Fucus serratus male)
ACGAACCAGCAAGCATGGCGGAGCGAGAGGGCAGAGCTAGAAGCGAGACT
GCTAGTGACGGAACTGCTAGTGGCAGAAAGGTGCGGCTTGGCGACAACCC
ATCTCGACAGCTCCAACATCGAAGACCTGGGTACGACTCCCGCCGAACGT
TCTCGTTTTGTACTGACTTACGATCGTGTAGAATTTCCTTGCCTTGTACT
GATTTACGATCGTGTGGGCTGGGAAAGTTTTAGCTCACGAAGTTGGACGT
TTCGGCATGCACACACGAGTACAGACCCTACTCGGCTACTTCGTATCCGA
CTAGCTTTACCCTTGGCTCTCTCCTTGCCCCCACGATTCGCGTCCAGCGC
AAAACTCATTGTTGGTGTTTCGCCCCGAGCCATGCGGCTCGTAGGGCCTT
TTGGCGTGACTGCACAATTCGGGACTGTAGGGATTTATTTACTGTTATTA
GACAACTGGTGGGTCCAGTTTTGAACGAACCAGCAAGCATGGCGGAGCGA
GAGGGCAGAGCTAGAAGCGAGACTGCTAGTGACGGAACTGCTAGTGGCAG
AAAGGTGCGGCTTGGCGACAACCCATCTCGACAGCTCCAACATCGAAGAC
CTGGGTACGACTCCCGCCGAACGTTCTCGTTTTGTACTGACTTACGATCG
TGTAGAATTTCCTTGCCTTGTACTGATTTACGATCGTGTGGGCTGGGAAA
GTTTTAGCTCACGAAGTTGGACGTTTCGGCATGCACACACGAGTACAGAC
CCTACTCGGCTACTTCGTATCCGACTAGCTTTACCCTTGGCTCTCTCCTT
GCCCCCACGATTCGCGTCCAGCGCAAAACTCATTGTTGGTGTTTCGCCCC
GAGCCATGCGGCTCGTAGGGCCTTTTGGCGTGACTGCACAATTCGGGACT
GTAGGGATTTATTTACTGTTATTAGACAACTGGTGGGTCCAGTTTTGA
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