mRNA_F-serratus_M_contig876.20121.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig876.20121.1 vs. uniprot
Match: D7G418_ECTSI (Ribonucleoside-diphosphate reductase small chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G418_ECTSI) HSP 1 Score: 237 bits (604), Expect = 6.670e-74 Identity = 112/128 (87.50%), Postives = 120/128 (93.75%), Query Frame = 2
Query: 2 LKKRGLMPGLTFSNEMISRDEGLHCDFACELFRLLENKPSRENVLSIITQAVEVEKSFICGALPCSLIGMNATVMAQYIEFVADHLLGSLGYENAYGTKNPFDWMDLISLQGKTNFFEKRVGEYQKAG 385
LKKRGLMPGLTFSNEMISRDEGLHCDFAC+LF LENKPSRE V++I+ +AVEVEKSFICGALPCSLIGMNA VM+QYIEFVAD LLGSLGY +YGT+NPFDWMDLISLQGKTNFFEKRVGEYQKAG
Sbjct: 356 LKKRGLMPGLTFSNEMISRDEGLHCDFACQLFASLENKPSRETVMAIVREAVEVEKSFICGALPCSLIGMNAGVMSQYIEFVADRLLGSLGYGKSYGTQNPFDWMDLISLQGKTNFFEKRVGEYQKAG 483
BLAST of mRNA_F-serratus_M_contig876.20121.1 vs. uniprot
Match: A0A2I0B0N4_9ASPA (Ribonucleoside-diphosphate reductase small chain n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0B0N4_9ASPA) HSP 1 Score: 209 bits (533), Expect = 4.200e-65 Identity = 96/128 (75.00%), Postives = 110/128 (85.94%), Query Frame = 2
Query: 2 LKKRGLMPGLTFSNEMISRDEGLHCDFACELFRLLENKPSRENVLSIITQAVEVEKSFICGALPCSLIGMNATVMAQYIEFVADHLLGSLGYENAYGTKNPFDWMDLISLQGKTNFFEKRVGEYQKAG 385
LKKRGLMPGL+FSNE+ISRDEGLHCDFAC L+ LL NK S E V I++ AVE+E+ F+C ALPC+L+GMNA +M+QYIEFVAD LL +LGYE YG NPFDWM+LISLQGKTNFFEKRVGEYQKAG
Sbjct: 193 LKKRGLMPGLSFSNELISRDEGLHCDFACLLYSLLNNKLSDERVREIVSDAVEIEREFVCDALPCALVGMNANLMSQYIEFVADRLLAALGYEKMYGVSNPFDWMELISLQGKTNFFEKRVGEYQKAG 320
BLAST of mRNA_F-serratus_M_contig876.20121.1 vs. uniprot
Match: A0A7S2CQR3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CQR3_9STRA) HSP 1 Score: 203 bits (516), Expect = 8.440e-65 Identity = 98/128 (76.56%), Postives = 108/128 (84.38%), Query Frame = 2
Query: 2 LKKRGLMPGLTFSNEMISRDEGLHCDFACELFRLLENKPSRENVLSIITQAVEVEKSFICGALPCSLIGMNATVMAQYIEFVADHLLGSLGYENAYGTKNPFDWMDLISLQGKTNFFEKRVGEYQKAG 385
LKKRGLMPGLTFSNE+ISRDEGLHCDFACEL+ +LE+ + + IITQAVEVEKSF+C ALP SLIGMN +MAQYIEF AD LL +LG Y TKNPFDWMDLISL+GKTNFFEKRVGEYQKAG
Sbjct: 21 LKKRGLMPGLTFSNELISRDEGLHCDFACELYAMLESPLPPDRLAQIITQAVEVEKSFVCDALPVSLIGMNNELMAQYIEFCADRLLVALGNPKHYNTKNPFDWMDLISLEGKTNFFEKRVGEYQKAG 148
BLAST of mRNA_F-serratus_M_contig876.20121.1 vs. uniprot
Match: A0A7J6X3S5_THATH (Ribonucleoside-diphosphate reductase small chain n=5 Tax=Mesangiospermae TaxID=1437183 RepID=A0A7J6X3S5_THATH) HSP 1 Score: 206 bits (525), Expect = 7.780e-64 Identity = 93/127 (73.23%), Postives = 111/127 (87.40%), Query Frame = 2
Query: 2 LKKRGLMPGLTFSNEMISRDEGLHCDFACELFRLLENKPSRENVLSIITQAVEVEKSFICGALPCSLIGMNATVMAQYIEFVADHLLGSLGYENAYGTKNPFDWMDLISLQGKTNFFEKRVGEYQKA 382
LKKRGLMPGLTFSNE+ISRDEGLHCDFAC L+ LL+NK S E V I++ AVE+E+ F+C A+PC+L+GMN +M+QYIEFVAD L+G+LGY+ Y T+NPFDWM+LISLQGKTNFFEKRVGEYQKA
Sbjct: 182 LKKRGLMPGLTFSNELISRDEGLHCDFACLLYGLLKNKLSEERVRGIVSDAVEIEREFVCEAIPCALVGMNCDLMSQYIEFVADRLIGALGYDKIYDTQNPFDWMELISLQGKTNFFEKRVGEYQKA 308
BLAST of mRNA_F-serratus_M_contig876.20121.1 vs. uniprot
Match: A0A5B6YP25_DAVIN (Putative ribonucleoside-diphosphate reductase small chain n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B6YP25_DAVIN) HSP 1 Score: 203 bits (516), Expect = 8.910e-64 Identity = 93/127 (73.23%), Postives = 106/127 (83.46%), Query Frame = 2
Query: 2 LKKRGLMPGLTFSNEMISRDEGLHCDFACELFRLLENKPSRENVLSIITQAVEVEKSFICGALPCSLIGMNATVMAQYIEFVADHLLGSLGYENAYGTKNPFDWMDLISLQGKTNFFEKRVGEYQKA 382
LKKRGLMPGLTFSNE+ISRDEGLHCDFAC L+ LL K S E V I+ AVE+E+ F+C ALPC+L+GMN +M+QYIEFVAD LLG+LGY Y +NPFDWM+LISLQGKTNFFEKRVGEYQKA
Sbjct: 96 LKKRGLMPGLTFSNELISRDEGLHCDFACLLYELLNQKLSEERVRGIVADAVEIEREFVCDALPCALVGMNGDLMSQYIEFVADRLLGALGYGKMYNVQNPFDWMELISLQGKTNFFEKRVGEYQKA 222
BLAST of mRNA_F-serratus_M_contig876.20121.1 vs. uniprot
Match: A4S0Z8_OSTLU (Uncharacterized protein n=3 Tax=Ostreococcus TaxID=70447 RepID=A4S0Z8_OSTLU) HSP 1 Score: 205 bits (521), Expect = 2.000e-63 Identity = 94/128 (73.44%), Postives = 108/128 (84.38%), Query Frame = 2
Query: 2 LKKRGLMPGLTFSNEMISRDEGLHCDFACELFRLLENKPSRENVLSIITQAVEVEKSFICGALPCSLIGMNATVMAQYIEFVADHLLGSLGYENAYGTKNPFDWMDLISLQGKTNFFEKRVGEYQKAG 385
LKKRGLMPGLTFSNE+ISRDEGLH DFAC LF +L NKPS E + I+T+AVE+EK F+C +LPC+L+GMNA +M+ YIE+VADHL SLG Y T NPFDWM+LISLQGKTNFFEKRVGEYQKAG
Sbjct: 183 LKKRGLMPGLTFSNELISRDEGLHRDFACLLFSMLNNKPSEETIRKIVTEAVEIEKEFVCDSLPCALVGMNAGMMSDYIEYVADHLFCSLGLAKEYNTTNPFDWMELISLQGKTNFFEKRVGEYQKAG 310
BLAST of mRNA_F-serratus_M_contig876.20121.1 vs. uniprot
Match: A0A835YXN6_9STRA (Ferritin-like superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXN6_9STRA) HSP 1 Score: 206 bits (524), Expect = 2.560e-63 Identity = 98/128 (76.56%), Postives = 108/128 (84.38%), Query Frame = 2
Query: 2 LKKRGLMPGLTFSNEMISRDEGLHCDFACELFRLLENKPSRENVLSIITQAVEVEKSFICGALPCSLIGMNATVMAQYIEFVADHLLGSLGYENAYGTKNPFDWMDLISLQGKTNFFEKRVGEYQKAG 385
LKKRGLMPGLTFSNE+ISRDEGLHCDFACEL+R+LE SR +L IIT+AV+VEK FIC ALP SLIGMNA M YIEFVAD +L SLGY+ Y +NPFDWM+LISLQGKTNFFEKRV EYQKAG
Sbjct: 228 LKKRGLMPGLTFSNELISRDEGLHCDFACELYRMLERPLSRARILHIITEAVDVEKDFICDALPVSLIGMNAATMRTYIEFVADRMLQSLGYDKHYHARNPFDWMELISLQGKTNFFEKRVAEYQKAG 355
BLAST of mRNA_F-serratus_M_contig876.20121.1 vs. uniprot
Match: RIR2C_ARATH (Ribonucleoside-diphosphate reductase small chain C n=33 Tax=Brassicaceae TaxID=3700 RepID=RIR2C_ARATH) HSP 1 Score: 204 bits (520), Expect = 3.070e-63 Identity = 94/127 (74.02%), Postives = 108/127 (85.04%), Query Frame = 2
Query: 2 LKKRGLMPGLTFSNEMISRDEGLHCDFACELFRLLENKPSRENVLSIITQAVEVEKSFICGALPCSLIGMNATVMAQYIEFVADHLLGSLGYENAYGTKNPFDWMDLISLQGKTNFFEKRVGEYQKA 382
LKKRGLMPGLTFSNE+ISRDEGLHCDFAC L+ LL+ K S E V SI+ AVE+E+ F+C ALPC+L+GMN +M+QYIEFVAD LLG+LGY YG NPFDWM+LISLQGKTNFFEKRVG+YQKA
Sbjct: 183 LKKRGLMPGLTFSNELISRDEGLHCDFACLLYTLLKTKLSEERVKSIVCDAVEIEREFVCDALPCALVGMNRDLMSQYIEFVADRLLGALGYGKVYGVTNPFDWMELISLQGKTNFFEKRVGDYQKA 309
BLAST of mRNA_F-serratus_M_contig876.20121.1 vs. uniprot
Match: A0A438EBW0_VITVI (Ribonucleoside-diphosphate reductase small chain n=4 Tax=Vitis TaxID=3603 RepID=A0A438EBW0_VITVI) HSP 1 Score: 203 bits (517), Expect = 3.200e-63 Identity = 92/127 (72.44%), Postives = 108/127 (85.04%), Query Frame = 2
Query: 2 LKKRGLMPGLTFSNEMISRDEGLHCDFACELFRLLENKPSRENVLSIITQAVEVEKSFICGALPCSLIGMNATVMAQYIEFVADHLLGSLGYENAYGTKNPFDWMDLISLQGKTNFFEKRVGEYQKA 382
LKKRGLMPGLTFSNE+ISRDEGLHCDFAC L+ LL NK S E V +I+ +V++E+ F+C ALPC+L+GMN+ +M+QYIEFVAD LLG+LGY Y NPFDWM+LISLQGKTNFFEKRVGEYQKA
Sbjct: 150 LKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSEERVKAIVADSVDIEREFVCDALPCALVGMNSALMSQYIEFVADRLLGALGYGKMYNVSNPFDWMELISLQGKTNFFEKRVGEYQKA 276
BLAST of mRNA_F-serratus_M_contig876.20121.1 vs. uniprot
Match: A0A059AQ59_EUCGR (Uncharacterized protein n=4 Tax=Myrtoideae TaxID=1699513 RepID=A0A059AQ59_EUCGR) HSP 1 Score: 204 bits (518), Expect = 3.490e-63 Identity = 93/127 (73.23%), Postives = 107/127 (84.25%), Query Frame = 2
Query: 2 LKKRGLMPGLTFSNEMISRDEGLHCDFACELFRLLENKPSRENVLSIITQAVEVEKSFICGALPCSLIGMNATVMAQYIEFVADHLLGSLGYENAYGTKNPFDWMDLISLQGKTNFFEKRVGEYQKA 382
LKKRGLMPGLTFSNE+ISRDEGLHCDFAC L+ LL NKPS E V I+ +AV++E+ F+C ALPC+L+GMN+ +M QYIEFVAD LLG+LG Y NPFDWM+LISLQGKTNFFEKRVGEYQKA
Sbjct: 165 LKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKPSEERVKGIVREAVDIEREFVCDALPCALVGMNSDLMGQYIEFVADRLLGALGCGKVYDVTNPFDWMELISLQGKTNFFEKRVGEYQKA 291 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig876.20121.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig876.20121.1 >prot_F-serratus_M_contig876.20121.1 ID=prot_F-serratus_M_contig876.20121.1|Name=mRNA_F-serratus_M_contig876.20121.1|organism=Fucus serratus male|type=polypeptide|length=122bp MPGLTFSNEMISRDEGLHCDFACELFRLLENKPSRENVLSIITQAVEVEKback to top mRNA from alignment at F-serratus_M_contig876:224817..226051- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig876.20121.1 ID=mRNA_F-serratus_M_contig876.20121.1|Name=mRNA_F-serratus_M_contig876.20121.1|organism=Fucus serratus male|type=mRNA|length=1235bp|location=Sequence derived from alignment at F-serratus_M_contig876:224817..226051- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig876:224817..226051- >mRNA_F-serratus_M_contig876.20121.1 ID=mRNA_F-serratus_M_contig876.20121.1|Name=mRNA_F-serratus_M_contig876.20121.1|organism=Fucus serratus male|type=CDS|length=732bp|location=Sequence derived from alignment at F-serratus_M_contig876:224817..226051- (Fucus serratus male)back to top |