mRNA_F-serratus_M_contig876.20118.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig876.20118.1
Unique NamemRNA_F-serratus_M_contig876.20118.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig876.20118.1 vs. uniprot
Match: D7G409_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G409_ECTSI)

HSP 1 Score: 235 bits (599), Expect = 8.360e-70
Identity = 157/391 (40.15%), Postives = 218/391 (55.75%), Query Frame = 1 
Query:   19 RRLSLELLEVRSTKRSLELQHRQARRDLAELRDERAEXXXXXXXXXXXXXXXXXXXXXXXXXQRQLTEVYKKQAVLLSIERDIRRDVEEELERCREAI--SAPKIARKVSWSDT-ID-----------------EISNNSDSSIE-PAPAEANG-------------PQLHELLEQVRSTLTGTVSSWVKGMLAACAREIKEALILPWLLHKLFFLCSELIHDRREDLINVFAGGKLEVNCGRTVVDSISQLDASTAEFMLRHLRRHHLTLFPISRDALPAAVDKVMMALAQSMIDCKEWDPDAKNPEAVRRALAASGLEQIVREYLRILVYCCLQSPAVAFSDDLGQVERYDRQLHSEPIDGEPAGEFCVVIFPALIAASDNGRWGDEPE 1089
            R+ SLELLE RS  R LE +    + ++A L  E+ E                           +L+    KQA LL+ E++ RRD E EL RC+ A+  +A + +   S S T +D                 + S+++ SS+E P  A A+              P L +L   V+S +TGTVS W+KGM AAC+  +++AL+LPWLLHKLFFL +ELI +RR++L+++F   + EV  G       S +       +  HL RH+ T+FP+  D L AA   VMM+LA SMI+ +EW+P+AKN +AV+ ALAASGLE+IV EYL I V C L+S   +F+DDLG VER+D   H +P+DGE  GE CVVIFPAL+        G+E E
Sbjct:   77 RQASLELLEARSLNRVLEQESVLDKEEIAALYQEQEEVLQANSALQAELEEARASLTEVCREVERLSAALTKQASLLTSEKNRRRDAETELGRCKSALVAAADRCSDPSSGSSTSVDNPGAASVEDNASSMGSTDGSHSTGSSVERPVLASASAIVDGAGPIDDDPEPDLPDLFHSVQSAMTGTVSRWIKGMQAACSPGLRQALVLPWLLHKLFFLSTELIDERRQELVSIF---EEEVAVGGNEGAKESSVT------LHHHLNRHYRTVFPLQGDKLMAATKTVMMSLAHSMIESEEWNPEAKNADAVQSALAASGLEKIVEEYLNIAVGCLLRS--YSFTDDLGDVERFDPNRHFDPVDGEVTGELCVVIFPALVGGDGGEGEGEEEE 456
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig876.20118.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G409_ECTSI8.360e-7040.15Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig876contigF-serratus_M_contig876:193213..197756 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-19_000540.1
Exons2
Model size1089
Cds size1089
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932555.8133862-CDS-F-serratus_M_contig876:193212..1940061622932555.8133862-CDS-F-serratus_M_contig876:193212..194006Fucus serratus maleCDSF-serratus_M_contig876 193213..194006 +
1690964363.8702388-CDS-F-serratus_M_contig876:193212..1940061690964363.8702388-CDS-F-serratus_M_contig876:193212..194006Fucus serratus maleCDSF-serratus_M_contig876 193213..194006 +
1622932555.8340902-CDS-F-serratus_M_contig876:197461..1977561622932555.8340902-CDS-F-serratus_M_contig876:197461..197756Fucus serratus maleCDSF-serratus_M_contig876 197462..197756 +
1690964363.8820996-CDS-F-serratus_M_contig876:197461..1977561690964363.8820996-CDS-F-serratus_M_contig876:197461..197756Fucus serratus maleCDSF-serratus_M_contig876 197462..197756 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig876.20118.1prot_F-serratus_M_contig876.20118.1Fucus serratus malepolypeptideF-serratus_M_contig876 193213..197756 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig876.20118.1

>prot_F-serratus_M_contig876.20118.1 ID=prot_F-serratus_M_contig876.20118.1|Name=mRNA_F-serratus_M_contig876.20118.1|organism=Fucus serratus male|type=polypeptide|length=363bp
MRDQEQRRLSLELLEVRSTKRSLELQHRQARRDLAELRDERAELLSSNAS
LEKDLSETRADLSRLRHEQRQLTEVYKKQAVLLSIERDIRRDVEEELERC
REAISAPKIARKVSWSDTIDEISNNSDSSIEPAPAEANGPQLHELLEQVR
STLTGTVSSWVKGMLAACAREIKEALILPWLLHKLFFLCSELIHDRREDL
INVFAGGKLEVNCGRTVVDSISQLDASTAEFMLRHLRRHHLTLFPISRDA
LPAAVDKVMMALAQSMIDCKEWDPDAKNPEAVRRALAASGLEQIVREYLR
ILVYCCLQSPAVAFSDDLGQVERYDRQLHSEPIDGEPAGEFCVVIFPALI
AASDNGRWGDEPE
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mRNA from alignment at F-serratus_M_contig876:193213..197756+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig876.20118.1 ID=mRNA_F-serratus_M_contig876.20118.1|Name=mRNA_F-serratus_M_contig876.20118.1|organism=Fucus serratus male|type=mRNA|length=4544bp|location=Sequence derived from alignment at F-serratus_M_contig876:193213..197756+ (Fucus serratus male)
ATGCGTGACCAGGAACAACGGCGATTATCGCTGGAGTTGCTGGAAGTCCG
CTCTACCAAGAGGAGCTTAGAGCTGCAGCACCGACAGGCTCGGCGGGATT
TGGCCGAGTTGAGGGACGAGCGGGCGGAGTTACTCAGCTCCAATGCATCC
CTCGAGAAGGACCTGAGTGAGACCAGGGCCGACCTGAGCCGTCTACGCCA
TGAACAACGGCAGTTGACGGAAGTCTACAAGAAGCAGGCCGTCCTTCTCA
GCATCGAGAGGGATATTCGAAGGGATGTAGAGGAAGAACTCGAGCGATGC
CGAGAGGCCATTTCTGCGCCCAAGATCGCCAGGAAGGTTTCTTGGAGTGA
CACAATCGATGAGATCAGCAACAACAGCGACAGCAGCATCGAGCCCGCTC
CGGCAGAGGCAAACGGTCCGCAGCTGCACGAGTTGCTGGAGCAGGTGCGG
TCAACGCTGACAGGGACAGTTAGCTCCTGGGTGAAAGGTATGCTTGCAGC
GTGCGCTCGGGAAATTAAAGAAGCCCTCATCCTTCCATGGCTGCTGCACA
AACTCTTCTTCCTATGCTCGGAGCTCATTCACGATAGGCGTGAGGACCTC
ATCAACGTCTTTGCCGGAGGGAAACTCGAAGTGAACTGTGGACGGACGGT
TGTCGATTCAATTTCACAATTGGATGCATCCACCGCGGAGTTCATGCTCC
GCCACCTTCGGCGCCATCACCTGACCTTGTTTCCCATCTCCAGGGACGCT
TTGCCGGCTGCCGTCGATAAGGTCATGATGGCTCTCGCTCAGAGGTGCGA
TTGAAAGGGATTCACGAGTTTGGCTGTTTTGTTTTGTCCCTTGGAATTGT
GTTTCGTTTGTTTCGATCCTGTGGTACATTCGTCTGAGTGTGTGTGTGTT
TGTTTCTTCCCATTTATTCTGGACATCAATTTCGTTGGATGTACCAGCCG
GGCAGCCTATGATCCCACCTAAACGTTTTGACATTTTCCCCTCTGTGTAG
GGGATGCTCAGAAGGTCTAACAATAGATGCGTTCAGAATTTTCTTTAAAA
TTACCAACAAACGTTTATCCTCGTGCTGCATACTACAGTACTATTAATAC
TACTGTCTGATTAATACTTTGAAGTACATTTGGTACATACTTCCTTCCGT
GGGATCAAGCTTACCAGCTCCGTACAATAGTTCAATTGTCATACACGAAG
TATTATTAGTCTATAGTGCAAGGACGAAACTAACAGCTTTCAAAGTCGAG
GTCTCGAAACAAGTTTTCCCTTTACACGACCCGGTCGCCCCGATTGTTCT
TCTGATTTCACATTAACCGATCGGGCCTCAACCATACCTACTCAGACCAA
AAGGGGTCCAAATCGCGACCAATCAAAACGGTTCATCAAACATCCTTTCC
AGGTACTCCATATCGAGAGCAACCTCGATCGACTCGGATTGCTATCGCCT
ACCCACGACCAGCGTTCTCAGCAAAAAAACGGAAGAATTACGCTCCAACC
AGTTTTGATTAACAAGAAGTCCAAGTTTCTCAAGGTCACACAATCGTACA
GAAATAAGGAAAATTAAAACACCGAGGTCCATGGTGGCAGAGGCCTTGAG
CTGGTGAAGCCGGCGCGCGACCCAGTATCCAGCCGTCCGAAGCCCTGTGC
ATTCCTGAAAAAAGCCCCGCGAATCTTGCCCGTTCGCCCCGGTAGCTCAG
TTAGTAACCTCGTAACCTTCTGACACGTTGGGACGTGAGTTCGAATCCAG
GTAACTGGGATTTTTCCCACTAAAAACTAAAAACTAAAATAAAATGCCCA
ATGAGTGGAGAACGATTAAATCGTTATTATTTCATACACAAAATTCGACT
TCACGGTCGACGAAGGAAAGGAACGGCCGAATGAATCCTTCTCGCGAGAA
AAATAAAGGCGTGCACCGCAGAAGGAAGGTGGATGAGAAATCGTGTGTGA
CCTTCCTCCTGTGTGACCCCGGCTGGTACATCCAACGAACTTGACGTCCA
GAATTGATGGGAAGAAAAAACACACACACCCACACATCACCCAGGATCAA
CACACATAGAAGAGATAACAAGCAATTTAATAAATACACACACACACACA
GAGTAACAAGGCAGGGGGGGGGGGGCACAAGGTACTCTGGGCTTCAGTAA
GACTAATTGTACAAGTAAAGAGAGTGTGTCCCCTTTGTCGCGTCTGATCA
GAGGTTTTCGTAAAAAGTACCAGGTATCATTGATCACCCCTCGGGAGGAT
CAGTGCGGGTATTAGTATTAATAGCATAGAATGACTATTAATAGGATGAC
AGGGCCGGATTGCGCGGTTATGTGCAATCTAATAAATACACACACACAAA
CATACTACTCTGTATTAACATGCCCACTTCATACAAATAGTGGGGGTGGG
AGAGAGAGGCGCATATTAATTGGTCCATGGCGACCTGCCGATCGTAATAA
GTATCATTGATCCCCCCTTGGGAGGATCAATGCGAGTGGCATAGAATGAC
TAGGATGGCAGGGCCGGATTGCGCGGTTATGTGCAATTTAATAAATACAC
ACACACACACTACTCTGTATGAACATGCCCACTTCATACCAATAATGGGG
GTGGGAAAGAGAGGTGCATACTGGTATTAATTGGTCCATGGTGACCTGCC
AAGGCAGCACCCGTTCGGAACTACCTTGAGGTTTACTGGCCTTGTGCCGG
CGAACTCTCGGCAATGGACGCCATCGGTACGCAACTGCGTGACCCGATAA
ACTCGAGACTGGCCCGATGGCCTATCGGGGTTTCATAAATGGACGCCCCG
TAAGTAAGCACCAGATTCAGCCTGAGTATGGAGATGAGCAGGCTGACGCG
GGACGGGACGTCTGAACCCATCTCGCGAGACCAAATTCTCAGGCACGCAC
GGGGACAGGGGAATATTATTTTCCCTGTTCAGCTGACCACGGGCAGGATT
GGTAACCTTACCCGGCTGATCCATACTCTGCTATATGTGATGACCATACA
TACATAGTTTACATGCATACAGTACAGGAGTATTAGTAGTGTCGGATCTA
GAGTACTGTACTGTACTGTAGTAGCTAATACCAGGTACTGTATAATAGTA
GTAATGCCCTACACTCATTATGTACTGCAGTTCATCTCCTATAATATTAT
TAATACGTACAGTACATAGCTCGTTCCCTATTTGGTCTCTAATCTTAGCA
GATCACGAATTATGTACGTATTAATGCATGGTCATAACACCACACATATA
GCAAGAGTAAGGATCAACCGGGCAAGGTTGCCAATCCTGCTCGTGGTCAG
CTGAACAGGGAAAACGAATATTTCCCTGTCCTCGTTCGCGCTTGATAATT
TGGTCTCGCGAGACGGATTCGGCAGTCCCGTCCCTCTTCAGCCTGCTCGT
CTCCATACTCCGGCTGAATCTGGTCCTAAATTACCTGATTCCTCCCGATT
TCCGCGGTGGCGTCCATTTTTTTTGTTTTTTTTACGGCCATACGCCATCG
GGTCAGTCTCGAGTTTATCGAGTCGCGCAAGTGCGTACCGATGGCGTTCA
CTGCCGAGAGTCCGCCGACACAGGGCCAGTAGTCATAGTCCTCAAGGTAG
TTCCAGTAAGGGGTGCTGCCTTTGCATCACCATGGACCAATTAATATGCG
CCTCTCTTTCCCACAGACACTTACCGGTATTATTATCAATTGGGAATTTG
AAAGTATCGATATAGACAAATTAATACTTATGTAGTTGAAGTTATTGCGG
GATGGTACAACTGACATCAGTAGAGGTCCAGTAGGAACTATTAATAGTAC
TGTATTAAATAATACCACGGAAACAACAAGCGCTAACCCACGGAAAACAG
ACAAAAACAAAATGGTCTGTCTCGAAAATAATACCTTGTAACAGTGGACG
AACGTGCCTTGTACATACATACATTATGATGATTTCAGATCGATCCGGTT
CATCAACCGTCAATATTTTTTTACGTCAGCACCGTACGTAGACAGCAGTA
TATATATGTAATAATAGAGCAGCTTGCGTTGTGCAGGCACCTCTCCTCTC
TCCGAGCTATTAATAGAGCTGGGCGTGATCCCAGGGCGAAGCAAACCGCA
TAGAACTCGTCAGAGTAAACACAACCGCACAGCAGGCAGATCACTCGCCC
CTCCTAGCTAGTACTATCTATTTATATTACTAATAATAGTCGCACTCTCC
GTGTGATACCATTATCACAATTGTGTTGCTCTCTCCCTTTACACGACAGC
ATGATCGACTGCAAGGAGTGGGATCCAGACGCTAAGAACCCGGAGGCTGT
ACGTCGCGCTCTGGCGGCAAGCGGACTGGAACAAATCGTTCGCGAGTATC
TGCGTATCCTGGTTTACTGCTGCCTCCAGAGCCCCGCAGTGGCATTCTCC
GATGACCTCGGCCAGGTGGAGCGGTACGATCGTCAACTGCACTCGGAGCC
CATTGACGGAGAGCCGGCGGGCGAGTTTTGCGTGGTAATCTTTCCGGCGT
TGATCGCGGCGTCAGATAACGGTCGCTGGGGCGATGAACCCGAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig876:193213..197756+

>mRNA_F-serratus_M_contig876.20118.1 ID=mRNA_F-serratus_M_contig876.20118.1|Name=mRNA_F-serratus_M_contig876.20118.1|organism=Fucus serratus male|type=CDS|length=2178bp|location=Sequence derived from alignment at F-serratus_M_contig876:193213..197756+ (Fucus serratus male)
ATGCGTGACCAGGAACAACGGCGATTATCGCTGGAGTTGCTGGAAGTCCG
CTCTACCAAGAGGAGCTTAGAGCTGCAGCACCGACAGGCTCGGCGGGATT
TGGCCGAGTTGAGGGACGAGCGGGCGGAGTTACTCAGCTCCAATGCATCC
CTCGAGAAGGACCTGAGTGAGACCAGGGCCGACCTGAGCCGTCTACGCCA
TGAACAACGGCAGTTGACGGAAGTCTACAAGAAGCAGGCCGTCCTTCTCA
GCATCGAGAGGGATATTCGAAGGGATGTAGAGGAAGAACTCGAGCGATGC
CGAGAGGCCATTTCTGCGCCCAAGATCGCCAGGAAGGTTTCTTGGAGTGA
CACAATCGATGAGATCAGCAACAACAGCGACAGCAGCATCGAGCCCGCTC
CGGCAGAGGCAAACGGTCCGCAGCTGCACGAGTTGCTGGAGCAGGTGCGG
TCAACGCTGACAGGGACAGTTAGCTCCTGGGTGAAAGGTATGCTTGCAGC
GTGCGCTCGGGAAATTAAAGAAGCCCTCATCCTTCCATGGCTGCTGCACA
AACTCTTCTTCCTATGCTCGGAGCTCATTCACGATAGGCGTGAGGACCTC
ATCAACGTCTTTGCCGGAGGGAAACTCGAAGTGAACTGTGGACGGACGGT
TGTCGATTCAATTTCACAATTGGATGCATCCACCGCGGAGTTCATGCTCC
GCCACCTTCGGCGCCATCACCTGACCTTGTTTCCCATCTCCAGGGACGCT
TTGCCGGCTGCCGTCGATAAGGTCATGATGGCTCTCGCTCAGAGATGCGT
GACCAGGAACAACGGCGATTATCGCTGGAGTTGCTGGAAGTCCGCTCTAC
CAAGAGGAGCTTAGAGCTGCAGCACCGACAGGCTCGGCGGGATTTGGCCG
AGTTGAGGGACGAGCGGGCGGAGTTACTCAGCTCCAATGCATCCCTCGAG
AAGGACCTGAGTGAGACCAGGGCCGACCTGAGCCGTCTACGCCATGAACA
ACGGCAGTTGACGGAAGTCTACAAGAAGCAGGCCGTCCTTCTCAGCATCG
AGAGGGATATTCGAAGGGATGTAGAGGAAGAACTCGAGCGATGCCGAGAG
GCCATTTCTGCGCCCAAGATCGCCAGGAAGGTTTCTTGGAGTGACACAAT
CGATGAGATCAGCAACAACAGCGACAGCAGCATCGAGCCCGCTCCGGCAG
AGGCAAACGGTCCGCAGCTGCACGAGTTGCTGGAGCAGGTGCGGTCAACG
CTGACAGGGACAGTTAGCTCCTGGGTGAAAGGTATGCTTGCAGCGTGCGC
TCGGGAAATTAAAGAAGCCCTCATCCTTCCATGGCTGCTGCACAAACTCT
TCTTCCTATGCTCGGAGCTCATTCACGATAGGCGTGAGGACCTCATCAAC
GTCTTTGCCGGAGGGAAACTCGAAGTGAACTGTGGACGGACGGTTGTCGA
TTCAATTTCACAATTGGATGCATCCACCGCGGAGTTCATGCTCCGCCACC
TTCGGCGCCATCACCTGACCTTGTTTCCCATCTCCAGGGACGCTTTGCCG
GCTGCCGTCGATAAGGTCATGATGGCTCTCGCTCAGAGCATGATCGACTG
CAAGGAGTGGGATCCAGACGCTAAGAACCCGGAGGCTGTACGTCGCGCTC
TGGCGGCAAGCGGACTGGAACAAATCGTTCGCGAGTATCTGCGTATCCTG
GTTTACTGCTGCCTCCAGAGCCCCGCAGTGGCATTCTCCGATGACCTCGG
CCAGGTGGAGCGGTACGATCGTCAACTGCACTCGGAGCCCATTGACGGAG
AGCCGGCGGGCGAGTTTTGCGTGGTAATCTTTCCGGCGTTGATCGCGGCG
TCAGATAACGGTCGCTGGGGCGATGAACCCGAACATGATCGACTGCAAGG
AGTGGGATCCAGACGCTAAGAACCCGGAGGCTGTACGTCGCGCTCTGGCG
GCAAGCGGACTGGAACAAATCGTTCGCGAGTATCTGCGTATCCTGGTTTA
CTGCTGCCTCCAGAGCCCCGCAGTGGCATTCTCCGATGACCTCGGCCAGG
TGGAGCGGTACGATCGTCAACTGCACTCGGAGCCCATTGACGGAGAGCCG
GCGGGCGAGTTTTGCGTGGTAATCTTTCCGGCGTTGATCGCGGCGTCAGA
TAACGGTCGCTGGGGCGATGAACCCGAA
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