mRNA_F-serratus_M_contig876.20122.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig876.20122.1
Unique NamemRNA_F-serratus_M_contig876.20122.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig876.20122.1 vs. uniprot
Match: A0A7R9Y849_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y849_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 9.900e-10
Identity = 38/92 (41.30%), Postives = 52/92 (56.52%), Query Frame = -2 
Query:    4 APEVTGTIAGLRDRFPGHEGITRTSPLEPPVVVAGDICLEGKGRAETVGSASSAAEKEDIRAGFVEPVCRSDPSRFVLFPIKHPGLWDMYKQ 279
            APE  G +   R      E   RT+  EP     G++ ++   R +T G   +A+E       FVEP+CR DPSRFVLFPI+HP LW++YK+
Sbjct:   84 APERQGALESAR-----REQARRTAS-EPWRQRGGELSIDDD-RLQTAGDLGTASED------FVEPICRDDPSRFVLFPIRHPELWELYKK 162
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BLAST of mRNA_F-serratus_M_contig876.20122.1 vs. uniprot
Match: W7U0G7_9STRA (Ribonucleotide reductase small subunit (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U0G7_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.550e-9
Identity = 38/106 (35.85%), Postives = 55/106 (51.89%), Query Frame = -2 
Query:    4 SVREKQARIESRAPEVTGTIAGLRDRFPGHEGITRTSPLEPPVVVAGDICLEGKGRAETVGSASSAAEKEDIRAG--FVEPVCRSDPSRFVLFPIKHPGLWDMYKQ 315
            S +EK  +       V G +  L     G E +   +  E   V   ++   GK    T   AS++ ++E    G  +VEP+CR DP+RFVLFPI+HP LW+MYK+
Sbjct:  144 SAQEKATKTPCLPRRVRGGMTRLTLAGMGREDVEEATDRED--VRGAEVQATGKETHSTDAPASTSGDEERRLEGDGWVEPICREDPARFVLFPIRHPELWEMYKR 247
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BLAST of mRNA_F-serratus_M_contig876.20122.1 vs. uniprot
Match: D7G418_ECTSI (Ribonucleoside-diphosphate reductase small chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G418_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 3.590e-9
Identity = 25/29 (86.21%), Postives = 28/29 (96.55%), Query Frame = -2 
Query:    4 FVEPVCRSDPSRFVLFPIKHPGLWDMYKQ 90
            FVEP+CR+DPSRFVLFPIKHP LWDMYK+
Sbjct:  179 FVEPICRADPSRFVLFPIKHPELWDMYKK 207
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BLAST of mRNA_F-serratus_M_contig876.20122.1 vs. uniprot
Match: A0A7S1U790_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U790_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.380e-8
Identity = 22/29 (75.86%), Postives = 27/29 (93.10%), Query Frame = -2 
Query:    4 FVEPVCRSDPSRFVLFPIKHPGLWDMYKQ 90
            FVEP+CR DPSRFVLFPI+HP LW++YK+
Sbjct:   92 FVEPICREDPSRFVLFPIRHPELWELYKK 120
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BLAST of mRNA_F-serratus_M_contig876.20122.1 vs. uniprot
Match: A0A4D9D483_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D483_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 4.030e-8
Identity = 22/30 (73.33%), Postives = 28/30 (93.33%), Query Frame = -2 
Query:    4 GFVEPVCRSDPSRFVLFPIKHPGLWDMYKQ 93
            G+VEP+CR DP+RFVLFPI+HP LW+MYK+
Sbjct:  172 GWVEPICREDPARFVLFPIRHPELWEMYKR 201
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BLAST of mRNA_F-serratus_M_contig876.20122.1 vs. uniprot
Match: A0A835YXN6_9STRA (Ferritin-like superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXN6_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 2.560e-7
Identity = 27/41 (65.85%), Postives = 32/41 (78.05%), Query Frame = -2 
Query:    4 AAEKEDIR--AGFVEPVCRSDPSRFVLFPIKHPGLWDMYKQ 120
            A E+  +R  A +VEP+CR D SRFVLFPIKHP LWDMYK+
Sbjct:   39 AQEEASLRKEAEWVEPLCRPDRSRFVLFPIKHPKLWDMYKK 79
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BLAST of mRNA_F-serratus_M_contig876.20122.1 vs. uniprot
Match: A0A7S2WPD1_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WPD1_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 5.000e-7
Identity = 21/29 (72.41%), Postives = 25/29 (86.21%), Query Frame = -2 
Query:    4 FVEPVCRSDPSRFVLFPIKHPGLWDMYKQ 90
            FVEP+CR D SRF LFP++HP LW+MYKQ
Sbjct:  122 FVEPICREDASRFALFPVRHPSLWNMYKQ 150
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BLAST of mRNA_F-serratus_M_contig876.20122.1 vs. uniprot
Match: A0A7S3AWH4_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AWH4_9EUKA)

HSP 1 Score: 52.0 bits (123), Expect = 3.610e-5
Identity = 23/37 (62.16%), Postives = 28/37 (75.68%), Query Frame = -2 
Query:    4 EKEDIRAGFVEPVCRSDPSRFVLFPIKHPGLWDMYKQ 114
            E+ED    +VEP+CR D SRFVLFPI+ P +W MYKQ
Sbjct:    7 EEED----WVEPICRVDRSRFVLFPIRQPDIWKMYKQ 39
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BLAST of mRNA_F-serratus_M_contig876.20122.1 vs. uniprot
Match: R1FRC5_EMIHU (Small subunit of putative ribonucleoside-diphosphate reductase n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FRC5_EMIHU)

HSP 1 Score: 50.8 bits (120), Expect = 8.190e-5
Identity = 20/29 (68.97%), Postives = 23/29 (79.31%), Query Frame = -2 
Query:    4 FVEPVCRSDPSRFVLFPIKHPGLWDMYKQ 90
            FVEP+CR   SRFVLFPI+H  +W MYKQ
Sbjct:   73 FVEPMCRETDSRFVLFPIQHADIWQMYKQ 101
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BLAST of mRNA_F-serratus_M_contig876.20122.1 vs. uniprot
Match: R1E741_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1E741_EMIHU)

HSP 1 Score: 50.8 bits (120), Expect = 9.190e-5
Identity = 20/29 (68.97%), Postives = 23/29 (79.31%), Query Frame = -2 
Query:    4 FVEPVCRSDPSRFVLFPIKHPGLWDMYKQ 90
            FVEP+CR   SRFVLFPI+H  +W MYKQ
Sbjct:   97 FVEPMCRETDSRFVLFPIQHADIWQMYKQ 125
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig876.20122.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A7R9Y849_9STRA9.900e-1041.30Hypothetical protein (Fragment) n=2 Tax=Pinguiococ... [more]
W7U0G7_9STRA1.550e-935.85Ribonucleotide reductase small subunit (Fragment) ... [more]
D7G418_ECTSI3.590e-986.21Ribonucleoside-diphosphate reductase small chain n... [more]
A0A7S1U790_9STRA1.380e-875.86Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A4D9D483_9STRA4.030e-873.33Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A835YXN6_9STRA2.560e-765.85Ferritin-like superfamily n=1 Tax=Tribonema minus ... [more]
A0A7S2WPD1_9STRA5.000e-772.41Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A7S3AWH4_9EUKA3.610e-562.16Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
R1FRC5_EMIHU8.190e-568.97Small subunit of putative ribonucleoside-diphospha... [more]
R1E741_EMIHU9.190e-568.97Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig876contigF-serratus_M_contig876:228580..228970 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size391
Cds size318
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig876.20122.1prot_F-serratus_M_contig876.20122.1Fucus serratus malepolypeptideF-serratus_M_contig876 228593..228910 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932555.732227-UTR-F-serratus_M_contig876:228579..2285921622932555.732227-UTR-F-serratus_M_contig876:228579..228592Fucus serratus maleUTRF-serratus_M_contig876 228580..228592 +
1690964363.8218694-UTR-F-serratus_M_contig876:228579..2285921690964363.8218694-UTR-F-serratus_M_contig876:228579..228592Fucus serratus maleUTRF-serratus_M_contig876 228580..228592 +
1622932555.7711957-UTR-F-serratus_M_contig876:228910..2289701622932555.7711957-UTR-F-serratus_M_contig876:228910..228970Fucus serratus maleUTRF-serratus_M_contig876 228911..228970 +
1690964363.8549001-UTR-F-serratus_M_contig876:228910..2289701690964363.8549001-UTR-F-serratus_M_contig876:228910..228970Fucus serratus maleUTRF-serratus_M_contig876 228911..228970 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932555.7513092-CDS-F-serratus_M_contig876:228592..2289101622932555.7513092-CDS-F-serratus_M_contig876:228592..228910Fucus serratus maleCDSF-serratus_M_contig876 228593..228910 +
1690964363.833822-CDS-F-serratus_M_contig876:228592..2289101690964363.833822-CDS-F-serratus_M_contig876:228592..228910Fucus serratus maleCDSF-serratus_M_contig876 228593..228910 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig876.20122.1

>prot_F-serratus_M_contig876.20122.1 ID=prot_F-serratus_M_contig876.20122.1|Name=mRNA_F-serratus_M_contig876.20122.1|organism=Fucus serratus male|type=polypeptide|length=106bp
MSHSPGCLIGNKTNLDGSDRQTGSTKPALMSSFSAALDADPTVSALPFPS
KQISPATTTGGSKGEVLVIPSCPGKRSLSPAIVPVTSGARDSILACFSRT
DATAS*
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mRNA from alignment at F-serratus_M_contig876:228580..228970+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig876.20122.1 ID=mRNA_F-serratus_M_contig876.20122.1|Name=mRNA_F-serratus_M_contig876.20122.1|organism=Fucus serratus male|type=mRNA|length=391bp|location=Sequence derived from alignment at F-serratus_M_contig876:228580..228970+ (Fucus serratus male)
GGCCTGCTTGTACATGTCCCATAGTCCCGGGTGCTTGATCGGAAACAAGA
CGAACCTCGACGGATCTGACCGACAGACGGGCTCGACAAAGCCCGCCCTT
ATGTCTTCTTTCTCGGCCGCGCTGGACGCAGACCCCACCGTTTCAGCCCT
GCCCTTCCCCTCCAAACAAATATCCCCGGCGACAACCACTGGAGGCTCCA
AAGGAGAGGTTCTTGTGATTCCCTCATGTCCTGGGAAGCGGTCCCTCAGC
CCCGCGATCGTTCCCGTTACCTCTGGTGCTCGCGATTCAATTCTTGCCTG
CTTCTCCCGTACCGATGCGACCGCGTCTTGAGCTTCAAGGTCATCCGGGC
CTTCTCGACGTGGTCTCCTCATATCCTCCCCATGGCTAGCT
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Coding sequence (CDS) from alignment at F-serratus_M_contig876:228580..228970+

>mRNA_F-serratus_M_contig876.20122.1 ID=mRNA_F-serratus_M_contig876.20122.1|Name=mRNA_F-serratus_M_contig876.20122.1|organism=Fucus serratus male|type=CDS|length=636bp|location=Sequence derived from alignment at F-serratus_M_contig876:228580..228970+ (Fucus serratus male)
ATGTCCCATAGTCCCGGGTGCTTGATCGGAAACAAGACGAACCTCGACGG
ATCTGACCGACAGACGGGCTCGACAAAGCCCGCCCTTATGTCTTCTTTCT
CGGCCGCGCTGGACGCAGACCCCACCGTTTCAGCCCTGCCCTTCCCCTCC
AAACAAATATCCCCGGCGACAACCACTGGAGGCTCCAAAGGAGAGGTTCT
TGTGATTCCCTCATGTCCTGGGAAGCGGTCCCTCAGCCCCGCGATCGTTC
CCGTTACCTCTGGTGCTCGCGATTCAATTCTTGCCTGCTTCTCCCGTACC
GATGCGACCGCGTCTTGAATGTCCCATAGTCCCGGGTGCTTGATCGGAAA
CAAGACGAACCTCGACGGATCTGACCGACAGACGGGCTCGACAAAGCCCG
CCCTTATGTCTTCTTTCTCGGCCGCGCTGGACGCAGACCCCACCGTTTCA
GCCCTGCCCTTCCCCTCCAAACAAATATCCCCGGCGACAACCACTGGAGG
CTCCAAAGGAGAGGTTCTTGTGATTCCCTCATGTCCTGGGAAGCGGTCCC
TCAGCCCCGCGATCGTTCCCGTTACCTCTGGTGCTCGCGATTCAATTCTT
GCCTGCTTCTCCCGTACCGATGCGACCGCGTCTTGA
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