mRNA_F-serratus_M_contig876.20123.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig876.20123.1
Unique NamemRNA_F-serratus_M_contig876.20123.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig876.20123.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig876contigF-serratus_M_contig876:228963..230258 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size314
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932555.5359967-CDS-F-serratus_M_contig876:228963..2291941622932555.5359967-CDS-F-serratus_M_contig876:228963..229194Fucus serratus maleCDSF-serratus_M_contig876 228964..229194 -
1690964363.7625399-CDS-F-serratus_M_contig876:228963..2291941690964363.7625399-CDS-F-serratus_M_contig876:228963..229194Fucus serratus maleCDSF-serratus_M_contig876 228964..229194 -
1622932555.5612853-CDS-F-serratus_M_contig876:230177..2302581622932555.5612853-CDS-F-serratus_M_contig876:230177..230258Fucus serratus maleCDSF-serratus_M_contig876 230178..230258 -
1690964363.774726-CDS-F-serratus_M_contig876:230177..2302581690964363.774726-CDS-F-serratus_M_contig876:230177..230258Fucus serratus maleCDSF-serratus_M_contig876 230178..230258 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig876.20123.1prot_F-serratus_M_contig876.20123.1Fucus serratus malepolypeptideF-serratus_M_contig876 228964..230258 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig876.20123.1

>prot_F-serratus_M_contig876.20123.1 ID=prot_F-serratus_M_contig876.20123.1|Name=mRNA_F-serratus_M_contig876.20123.1|organism=Fucus serratus male|type=polypeptide|length=104bp
ARDCYAGRSRGGGDEGGVGTGRRSSRQVRKASAVSGASSSERSALTTENE
GRNDGGVCVAGSPPEQDTQSPMSGNRWAARPQRFDTALRGSSESDVRRET
ERAS
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mRNA from alignment at F-serratus_M_contig876:228963..230258-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig876.20123.1 ID=mRNA_F-serratus_M_contig876.20123.1|Name=mRNA_F-serratus_M_contig876.20123.1|organism=Fucus serratus male|type=mRNA|length=1296bp|location=Sequence derived from alignment at F-serratus_M_contig876:228963..230258- (Fucus serratus male)
GCAAGAGATTGCTACGCTGGTCGATCGAGGGGTGGAGGTGATGAAGGTGG
CGTCGGGACTGGAAGAAGATCGTCGAGGCAGGTGTGTCGCGGAGAAGTTT
TGATTTTTAAAAGTTGATGCAGTGGGGGGTTATATGGCTGACATGTGAAC
CGACCGTCTCGATTTGCATTACGGTACCGAGTCCATACTACAGTACAATA
TAATGCTTCCCACCGGACGACCAAGCTTACCGCTTGTGTGTAGTAGTACA
GCATGCGCCATACGTTTCACGCACTGCTGCCACTCTATCTTCTACACACG
GGCTTTGTTGCGGCATCTTTGCCTTCGAAAAGGGGGGCTTTCGACTACAC
CTCAAGTGCGTTGTACTCCTCTGCTTGAGATATAGATTTGCTCTTTGTAC
ATGAGTATTTATGACGGTCGTTGGTGATACGCTCACCAAGATCAATGACA
CGTGTCCGGTACAGATCCTGCTTGGACGAATATATCCAGTTTGTTTTTAT
GTAGAAAAATCTAGAGTCATATTTCTGATCACCGCCACACCGTCCGTTTC
GATTGGTCGAGTGGAAACGTTTGGTTGATGATGTTGGCTACTATGTATGA
TAATTAATTGGGTTCTGCAATATTAGTCGCATAAGGTCAGTAATAGTAGG
AGGGGGAGAAATCCGTATTAATAGTTAGTACTTTGTCGGGCTGCAGGCTA
TCACTTATATTGTACGAAGTTCGAAGTACCAGAGTAAATGTTTTTACCTT
TTTCGAACCGTCTGCTTGCTGCAATTGTTCGCCGCCATCGCGGTCGGTAC
ACGCGATCGAGCCTCTTTGCACACTGTTAACTGTAGATATATGCTGTACA
AGCACTTGTATCACGATTCAGATTAGACCTCTAGACCGTCATGATCGTAC
TCTTGCAGATACCGTCAATACGCGAGCAGTGGTCAGCGAGAACATTATGC
CCCCAACATTTGCCCTTGAATCAGCTAAGGCGCGGAGCTGTGCCTTTCGG
TAGTTTTTACGGTGTCCTGTCCGCAATCGTATCCAATGTACTATTAATAC
TAAAATCGAAATAGGTGCGGAAAGCAAGCGCAGTGAGTGGAGCCTCGTCC
TCTGAGAGGTCCGCATTAACAACTGAAAACGAGGGACGAAACGACGGAGG
CGTTTGTGTTGCGGGGTCGCCTCCGGAGCAGGATACGCAATCACCCATGT
CCGGCAACCGTTGGGCCGCGCGACCGCAGCGCTTCGACACAGCGTTGAGG
GGATCGAGTGAGTCTGATGTGCGAAGAGAAACCGAGAGAGCTAGCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig876:228963..230258-

>mRNA_F-serratus_M_contig876.20123.1 ID=mRNA_F-serratus_M_contig876.20123.1|Name=mRNA_F-serratus_M_contig876.20123.1|organism=Fucus serratus male|type=CDS|length=624bp|location=Sequence derived from alignment at F-serratus_M_contig876:228963..230258- (Fucus serratus male)
GCAAGAGATTGCTACGCTGGTCGATCGAGGGGTGGAGGTGATGAAGGTGG
CGTCGGGACTGGAAGAAGATCGTCGAGGCAGGCAAGAGATTGCTACGCTG
GTCGATCGAGGGGTGGAGGTGATGAAGGTGGCGTCGGGACTGGAAGAAGA
TCGTCGAGGCAGGTGCGGAAAGCAAGCGCAGTGAGTGGAGCCTCGTCCTC
TGAGAGGTCCGCATTAACAACTGAAAACGAGGGACGAAACGACGGAGGCG
TTTGTGTTGCGGGGTCGCCTCCGGAGCAGGATACGCAATCACCCATGTCC
GGCAACCGTTGGGCCGCGCGACCGCAGCGCTTCGACACAGCGTTGAGGGG
ATCGAGTGAGTCTGATGTGCGAAGAGAAACCGAGAGAGCTAGCGTGCGGA
AAGCAAGCGCAGTGAGTGGAGCCTCGTCCTCTGAGAGGTCCGCATTAACA
ACTGAAAACGAGGGACGAAACGACGGAGGCGTTTGTGTTGCGGGGTCGCC
TCCGGAGCAGGATACGCAATCACCCATGTCCGGCAACCGTTGGGCCGCGC
GACCGCAGCGCTTCGACACAGCGTTGAGGGGATCGAGTGAGTCTGATGTG
CGAAGAGAAACCGAGAGAGCTAGC
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