mRNA_F-serratus_M_contig875.20111.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig875.20111.1
Unique NamemRNA_F-serratus_M_contig875.20111.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig875.20111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig875contigF-serratus_M_contig875:297998..299071 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size523
Cds size282
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig875.20111.1prot_F-serratus_M_contig875.20111.1Fucus serratus malepolypeptideF-serratus_M_contig875 298297..298877 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932553.6028676-UTR-F-serratus_M_contig875:297997..2980281622932553.6028676-UTR-F-serratus_M_contig875:297997..298028Fucus serratus maleUTRF-serratus_M_contig875 297998..298028 +
1690964362.883466-UTR-F-serratus_M_contig875:297997..2980281690964362.883466-UTR-F-serratus_M_contig875:297997..298028Fucus serratus maleUTRF-serratus_M_contig875 297998..298028 +
1622932553.6327016-UTR-F-serratus_M_contig875:298280..2982961622932553.6327016-UTR-F-serratus_M_contig875:298280..298296Fucus serratus maleUTRF-serratus_M_contig875 298281..298296 +
1690964362.8932185-UTR-F-serratus_M_contig875:298280..2982961690964362.8932185-UTR-F-serratus_M_contig875:298280..298296Fucus serratus maleUTRF-serratus_M_contig875 298281..298296 +
1622932553.6882432-UTR-F-serratus_M_contig875:298877..2990711622932553.6882432-UTR-F-serratus_M_contig875:298877..299071Fucus serratus maleUTRF-serratus_M_contig875 298878..299071 +
1690964362.9302711-UTR-F-serratus_M_contig875:298877..2990711690964362.9302711-UTR-F-serratus_M_contig875:298877..299071Fucus serratus maleUTRF-serratus_M_contig875 298878..299071 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932553.6508162-CDS-F-serratus_M_contig875:298296..2983751622932553.6508162-CDS-F-serratus_M_contig875:298296..298375Fucus serratus maleCDSF-serratus_M_contig875 298297..298375 +
1690964362.9025578-CDS-F-serratus_M_contig875:298296..2983751690964362.9025578-CDS-F-serratus_M_contig875:298296..298375Fucus serratus maleCDSF-serratus_M_contig875 298297..298375 +
1622932553.6746855-CDS-F-serratus_M_contig875:298674..2988771622932553.6746855-CDS-F-serratus_M_contig875:298674..298877Fucus serratus maleCDSF-serratus_M_contig875 298675..298877 +
1690964362.9153986-CDS-F-serratus_M_contig875:298674..2988771690964362.9153986-CDS-F-serratus_M_contig875:298674..298877Fucus serratus maleCDSF-serratus_M_contig875 298675..298877 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig875.20111.1

>prot_F-serratus_M_contig875.20111.1 ID=prot_F-serratus_M_contig875.20111.1|Name=mRNA_F-serratus_M_contig875.20111.1|organism=Fucus serratus male|type=polypeptide|length=94bp
MAARREIRYLGLHLRVSCLLCSGSFADTELKAVAILRENPANNPGRMPYA
TRSPLGRNFWGGYHHFQWDGINCPWMVMGWDGMVNFWCCDGMG*
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mRNA from alignment at F-serratus_M_contig875:297998..299071+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig875.20111.1 ID=mRNA_F-serratus_M_contig875.20111.1|Name=mRNA_F-serratus_M_contig875.20111.1|organism=Fucus serratus male|type=mRNA|length=1074bp|location=Sequence derived from alignment at F-serratus_M_contig875:297998..299071+ (Fucus serratus male)
TAGGTCATCTTCGTGGGAAACACGCTATACGGCCAACCGCTATGGGACTC
AAAAATGAAAAATGAACAAATTTCCGTAGGTAATTTCTGTGGGAAGCACG
TTATGGGAGCGAAACAAACGGAAATGTCCCTTTTTTTGTAGGTCTGTATT
TTTTTTGTGGCCACCTACGGAAATGAGGTCAGTGGTCCTATAGCGGTTGG
CCAAAATGTATTTGCACGGAAATGGGACTTCCGTGGGCATCAGGAAATTT
CGTGGAAAATGTGGTTGATGTATGTGCAACGAGGGCTGTGGCCAAGGAGA
TGGCTGCCCGACGAGAGATCCGCTACCTTGGCCTGCACCTGCGCGTCAGC
TGTCTCTTGTGCTCGGGATCATTTGCAGGTCTGTCGCTTGCTACTCTGCT
GCTGCTGTCCGTATGGGTGTACTATAAGATACGGTGGTCGACCTGCAGAT
AAGATTCAATATATTTGGACCAATCACGTAGAGACAGGTGGAGGGGCGTA
ATTACGCCGTACTATTAGAGATAGGTACATTACCCCGGAGGCAGATGCCC
TCTCTCTTACTCCATTCTCATTTCTTCTTCCTTTTCCCCTCTCTATTTGG
AGCGTCCTATAATAAAAATTATTAAACAATACTCTGCGCTGACTCGGTTT
TGCTGGCCGTTTCTGAGCATGAAGCAGATACTGAGCTGAAAGCGGTGGCC
ATTTTGAGGGAAAATCCCGCCAACAACCCGGGTCGCATGCCTTACGCGAC
GCGGTCGCCACTTGGACGGAATTTCTGGGGGGGTTACCATCACTTTCAAT
GGGATGGGATCAATTGCCCGTGGATGGTAATGGGATGGGATGGGATGGTA
AATTTCTGGTGCTGCGATGGGATGGGATAAGAAACCACTATCCCATGTTA
AGCTTCAGCGCGATGGCGAGAACAAAGCATTTTAGTTTGTAATTTGCAAC
ATTCGTCGCCCGAGTGGTCTAGTAGGTAACCTGCATACCTGCTAGTGCGG
AAGTCGTGAATTCGATTCTTAGCTTAAGCAGAATTTGTGTTCTTTCTTTC
GTAACGGAAAGCGTGGGAACGTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig875:297998..299071+

>mRNA_F-serratus_M_contig875.20111.1 ID=mRNA_F-serratus_M_contig875.20111.1|Name=mRNA_F-serratus_M_contig875.20111.1|organism=Fucus serratus male|type=CDS|length=564bp|location=Sequence derived from alignment at F-serratus_M_contig875:297998..299071+ (Fucus serratus male)
ATGGCTGCCCGACGAGAGATCCGCTACCTTGGCCTGCACCTGCGCGTCAG
CTGTCTCTTGTGCTCGGGATCATTTGCAGATGGCTGCCCGACGAGAGATC
CGCTACCTTGGCCTGCACCTGCGCGTCAGCTGTCTCTTGTGCTCGGGATC
ATTTGCAGATACTGAGCTGAAAGCGGTGGCCATTTTGAGGGAAAATCCCG
CCAACAACCCGGGTCGCATGCCTTACGCGACGCGGTCGCCACTTGGACGG
AATTTCTGGGGGGGTTACCATCACTTTCAATGGGATGGGATCAATTGCCC
GTGGATGGTAATGGGATGGGATGGGATGGTAAATTTCTGGTGCTGCGATG
GGATGGGATAAATACTGAGCTGAAAGCGGTGGCCATTTTGAGGGAAAATC
CCGCCAACAACCCGGGTCGCATGCCTTACGCGACGCGGTCGCCACTTGGA
CGGAATTTCTGGGGGGGTTACCATCACTTTCAATGGGATGGGATCAATTG
CCCGTGGATGGTAATGGGATGGGATGGGATGGTAAATTTCTGGTGCTGCG
ATGGGATGGGATAA
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