mRNA_F-serratus_M_contig873.20103.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig873.20103.1 vs. uniprot
Match: A0A6H5L552_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L552_9PHAE) HSP 1 Score: 151 bits (381), Expect = 4.210e-34 Identity = 153/364 (42.03%), Postives = 201/364 (55.22%), Query Frame = 3
Query: 6 ARDPLLPTPGNEIYGGGGSLYGAAKKT-RRNLPKSFIATVVWALASVGLTGWGWRYYARRAESSTFTCNHYMCKFEDKKGDAVELTSIPRARLVRADMVRVRNGEIVANYTKLKRAIQRKLGHTYAIVYMEPDSEDDDDESYDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMXXXXXXTV---------------------------ARRGAE------ERAKYTRERDEKRRRDGRPPLREPDEPRRITPEMFAQVAKDGGEHDDQDDRFPGDAGTMEQDYRNKAAIPSQADMM-------------QKATMA--EMKRSGRE--------------------RNRNTSPDDPDNKPPS 890
+RDPLLP GN GGGG LYG A+ + + L KSFIAT+VWAL S+ + GW Y +R+ ES+ C CK ED + + IPR ++VR ++VRV+NGE+V + KL+R+ QRKLGH+Y +VY+EPDSEDDDDESYD XXXXXXXXXXXXXXXXXXXXXXXXXX M + ARR AE +RAK+ ++R+E+ G PP++EPDE +R A A+ GG+ DD++ RFPGDA TM + R + +A M ++A A EM+R ++ N+ SPDDPDN PP+
Sbjct: 10 SRDPLLPHSGNGRSGGGG-LYGRARSSPKAALSKSFIATMVWALLSMSMIFGGWVYCSRKMESTWVLCEPGGCKIEDLRAGETTVLMIPRHKMVRGELVRVKNGEVV-DPVKLRRSAQRKLGHSYNVVYLEPDSEDDDDESYDSXXXXXXXXXXXXXXXXXXXXXXXXXXYDMAVMAQRAKERLENAIPPAGGPSGAKAAMASFPNRYAAEARREAELVRKDAQRAKWAKDREER----GLPPIKEPDEQQR----QKATAAR-GGDFDDEE-RFPGDAATMREKNRREIRNMEEARGMTAEEHRELSQQAFEEAAKAHKEMQRRDQQMRQMGNNLHYRAKPQPDTDNNNKKLSPDDPDNNPPA 361
BLAST of mRNA_F-serratus_M_contig873.20103.1 vs. uniprot
Match: D7FJ58_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ58_ECTSI) HSP 1 Score: 113 bits (283), Expect = 2.580e-24 Identity = 79/215 (36.74%), Postives = 115/215 (53.49%), Query Frame = 3
Query: 120 VVWALASVGLTGWGWRYYARRAESSTFTCNHYMCKFEDKKGDAVELTSIPRARLVRADMVRVRNGEIVANYTKLKRAIQRKLGHTYAIVYMEPDSEDDDDESYDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMXXXXXXTVARRGAEERAKYTRERDEKRRRDGRPPLREPDEPRRITPEMFAQVAKDGGEHDDQDDRFPGDAGTMEQDYR 764
+VWAL S+ + G GW Y +R+ ES+ C CK ED + + IPR ++VR ++VRV+NGE+V + KL+R+ QRKLGH+Y +VY+EPDSED +AR+ A+ RAK+ ++R+E+ G PP++EPDE RR A+ A+ GG+ DD++ RFPGDA TM + R
Sbjct: 1 MVWALLSMSMIGGGWVYCSRKMESTRVLCEPGGCKIEDLRAGETTVLMIPRHKMVRGELVRVKNGEVV-DPIKLRRSAQRKLGHSYNVVYLEPDSED----------------------------------PSRYAAEARREAELARKDAQ-RAKWAKDREER----GLPPIKEPDEQRR----QEAKAAR-GGDFDDEE-RFPGDAATMREKNR 169 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig873.20103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig873.20103.1 >prot_F-serratus_M_contig873.20103.1 ID=prot_F-serratus_M_contig873.20103.1|Name=mRNA_F-serratus_M_contig873.20103.1|organism=Fucus serratus male|type=polypeptide|length=295bp MCKFEDKKGDAVELTSIPRARLVRADMVRVRNGEIVANYTKLKRAIQRKLback to top mRNA from alignment at F-serratus_M_contig873:273057..300813+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig873.20103.1 ID=mRNA_F-serratus_M_contig873.20103.1|Name=mRNA_F-serratus_M_contig873.20103.1|organism=Fucus serratus male|type=mRNA|length=27757bp|location=Sequence derived from alignment at F-serratus_M_contig873:273057..300813+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig873:273057..300813+ >mRNA_F-serratus_M_contig873.20103.1 ID=mRNA_F-serratus_M_contig873.20103.1|Name=mRNA_F-serratus_M_contig873.20103.1|organism=Fucus serratus male|type=CDS|length=1770bp|location=Sequence derived from alignment at F-serratus_M_contig873:273057..300813+ (Fucus serratus male)back to top |