mRNA_F-serratus_M_contig872.20094.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig872.20094.1
Unique NamemRNA_F-serratus_M_contig872.20094.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig872.20094.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig872contigF-serratus_M_contig872:222542..223208 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size668
Cds size666
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932550.0562947-CDS-F-serratus_M_contig872:222542..2232081622932550.0562947-CDS-F-serratus_M_contig872:222542..223208Fucus serratus maleCDSF-serratus_M_contig872 222543..223208 -
1690964361.1029334-CDS-F-serratus_M_contig872:222542..2232081690964361.1029334-CDS-F-serratus_M_contig872:222542..223208Fucus serratus maleCDSF-serratus_M_contig872 222543..223208 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig872.20094.1prot_F-serratus_M_contig872.20094.1Fucus serratus malepolypeptideF-serratus_M_contig872 222543..223208 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig872.20094.1

>prot_F-serratus_M_contig872.20094.1 ID=prot_F-serratus_M_contig872.20094.1|Name=mRNA_F-serratus_M_contig872.20094.1|organism=Fucus serratus male|type=polypeptide|length=222bp
RQKLASASSWSASVDRGASVSVKERLAAFSKKTSGSSSSSSIGSSAGGGS
KINGVGLGLSKGDVRARFGAVPGSQSPSYNRGGAGGGSAETSLGKGAVGG
GLAKAAVGGRSSNYQRGGGFSMGKSGGVERAASASRIETSRSSQVNASSK
TRADEPSASSPSLDRPLSKKEEAIAALAAAEAEAAQEEEEWTRKMRAVEE
ERRRVREERMKVAAEAVANAER
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mRNA from alignment at F-serratus_M_contig872:222542..223208-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig872.20094.1 ID=mRNA_F-serratus_M_contig872.20094.1|Name=mRNA_F-serratus_M_contig872.20094.1|organism=Fucus serratus male|type=mRNA|length=667bp|location=Sequence derived from alignment at F-serratus_M_contig872:222542..223208- (Fucus serratus male)
CGCCAAAAGCTCGCGAGCGCTTCCTCGTGGTCGGCGAGCGTTGACCGGGG
CGCTTCAGTGTCCGTCAAAGAGCGGCTCGCGGCGTTCTCGAAGAAAACCA
GCGGCAGCAGCAGCAGCAGCAGCATCGGCAGCAGCGCCGGCGGTGGTAGC
AAAATCAATGGAGTGGGTCTTGGTCTTTCCAAAGGGGACGTGCGCGCGCG
CTTTGGCGCCGTGCCCGGGAGCCAATCTCCGTCGTATAACCGCGGTGGTG
CCGGCGGTGGGTCCGCGGAAACGTCGCTGGGAAAAGGGGCAGTCGGCGGT
GGGCTTGCCAAGGCGGCGGTCGGCGGCCGATCATCGAATTACCAACGAGG
CGGTGGATTTTCGATGGGGAAATCTGGTGGCGTTGAGCGGGCGGCGTCCG
CGAGCAGGATCGAGACGTCTCGTTCTTCTCAAGTCAACGCTTCTTCCAAG
ACCCGTGCTGACGAACCGTCGGCGTCCTCCCCGAGCCTTGACAGGCCACT
CAGCAAGAAGGAGGAGGCAATCGCGGCGCTGGCCGCGGCGGAGGCGGAAG
CCGCTCAAGAAGAGGAAGAGTGGACGCGCAAAATGAGGGCCGTAGAGGAG
GAGCGCCGGAGGGTCAGGGAAGAACGTATGAAGGTGGCGGCCGAGGCTGT
AGCCAACGCTGAGCGGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig872:222542..223208-

>mRNA_F-serratus_M_contig872.20094.1 ID=mRNA_F-serratus_M_contig872.20094.1|Name=mRNA_F-serratus_M_contig872.20094.1|organism=Fucus serratus male|type=CDS|length=1332bp|location=Sequence derived from alignment at F-serratus_M_contig872:222542..223208- (Fucus serratus male)
CGCCAAAAGCTCGCGAGCGCTTCCTCGTGGTCGGCGAGCGTTGACCGGGG
CGCTTCAGTGTCCGTCAAAGAGCGGCTCGCGGCGTTCTCGAAGAAAACCA
GCGGCAGCAGCAGCAGCAGCAGCATCGGCAGCAGCGCCGGCGGTGGTAGC
AAAATCAATGGAGTGGGTCTTGGTCTTTCCAAAGGGGACGTGCGCGCGCG
CTTTGGCGCCGTGCCCGGGAGCCAATCTCCGTCGTATAACCGCGGTGGTG
CCGGCGGTGGGTCCGCGGAAACGTCGCTGGGAAAAGGGGCAGTCGGCGGT
GGGCTTGCCAAGGCGGCGGTCGGCGGCCGATCATCGAATTACCAACGAGG
CGGTGGATTTTCGATGGGGAAATCTGGTGGCGTTGAGCGGGCGGCGTCCG
CGAGCAGGATCGAGACGTCTCGTTCTTCTCAAGTCAACGCTTCTTCCAAG
ACCCGTGCTGACGAACCGTCGGCGTCCTCCCCGAGCCTTGACAGGCCACT
CAGCAAGAAGGAGGAGGCAATCGCGGCGCTGGCCGCGGCGGAGGCGGAAG
CCGCTCAAGAAGAGGAAGAGTGGACGCGCAAAATGAGGGCCGTAGAGGAG
GAGCGCCGGAGGGTCAGGGAAGAACGTATGAAGGTGGCGGCCGAGGCTGT
AGCCAACGCTGAGCGGCGCCAAAAGCTCGCGAGCGCTTCCTCGTGGTCGG
CGAGCGTTGACCGGGGCGCTTCAGTGTCCGTCAAAGAGCGGCTCGCGGCG
TTCTCGAAGAAAACCAGCGGCAGCAGCAGCAGCAGCAGCATCGGCAGCAG
CGCCGGCGGTGGTAGCAAAATCAATGGAGTGGGTCTTGGTCTTTCCAAAG
GGGACGTGCGCGCGCGCTTTGGCGCCGTGCCCGGGAGCCAATCTCCGTCG
TATAACCGCGGTGGTGCCGGCGGTGGGTCCGCGGAAACGTCGCTGGGAAA
AGGGGCAGTCGGCGGTGGGCTTGCCAAGGCGGCGGTCGGCGGCCGATCAT
CGAATTACCAACGAGGCGGTGGATTTTCGATGGGGAAATCTGGTGGCGTT
GAGCGGGCGGCGTCCGCGAGCAGGATCGAGACGTCTCGTTCTTCTCAAGT
CAACGCTTCTTCCAAGACCCGTGCTGACGAACCGTCGGCGTCCTCCCCGA
GCCTTGACAGGCCACTCAGCAAGAAGGAGGAGGCAATCGCGGCGCTGGCC
GCGGCGGAGGCGGAAGCCGCTCAAGAAGAGGAAGAGTGGACGCGCAAAAT
GAGGGCCGTAGAGGAGGAGCGCCGGAGGGTCAGGGAAGAACGTATGAAGG
TGGCGGCCGAGGCTGTAGCCAACGCTGAGCGG
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