mRNA_F-serratus_M_contig871.20085.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig871.20085.1
Unique NamemRNA_F-serratus_M_contig871.20085.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig871.20085.1 vs. uniprot
Match: A0A6H5JYE2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYE2_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 1.640e-12
Identity = 31/56 (55.36%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:    1 LRTRRLLWAGTLLRMSSGRLPKRIVFGNLEGALRRGRGGKEKEWTDCVQSDIRAFG 168
            +R RRLL+AG+L R   GRLPKR++FG L G  +R RGG+E+ W  CV  D++AFG
Sbjct:   63 IRQRRLLFAGSLARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFG 118
[Close]
BLAST of mRNA_F-serratus_M_contig871.20085.1 vs. uniprot
Match: A0A6H5JAH7_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAH7_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 4.950e-12
Identity = 31/56 (55.36%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:    1 LRTRRLLWAGTLLRMSSGRLPKRIVFGNLEGALRRGRGGKEKEWTDCVQSDIRAFG 168
            +R RRLL+AG L R   GRLPKR++FG L G  +R RGG+E+ W  CV  D++AFG
Sbjct:  195 IRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFG 250
[Close]
BLAST of mRNA_F-serratus_M_contig871.20085.1 vs. uniprot
Match: A0A6H5JFE2_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFE2_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 1.100e-11
Identity = 31/56 (55.36%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:    1 LRTRRLLWAGTLLRMSSGRLPKRIVFGNLEGALRRGRGGKEKEWTDCVQSDIRAFG 168
            +R RRLL+AG L R   GRLPKR++FG L G  +R RGG+E+ W  CV  D++AFG
Sbjct:  325 IRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFG 380
[Close]
BLAST of mRNA_F-serratus_M_contig871.20085.1 vs. uniprot
Match: A0A6H5JLT1_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLT1_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 1.110e-11
Identity = 31/56 (55.36%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:    1 LRTRRLLWAGTLLRMSSGRLPKRIVFGNLEGALRRGRGGKEKEWTDCVQSDIRAFG 168
            +R RRLL+AG L R   GRLPKR++FG L G  +R RGG+E+ W  CV  D++AFG
Sbjct:  458 IRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFG 513
[Close]
BLAST of mRNA_F-serratus_M_contig871.20085.1 vs. uniprot
Match: A0A6H5KS82_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS82_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 2.090e-11
Identity = 31/56 (55.36%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:    1 LRTRRLLWAGTLLRMSSGRLPKRIVFGNLEGALRRGRGGKEKEWTDCVQSDIRAFG 168
            +R RRLL+AG L R   GRLPKR++FG L G  +R RGG+E+ W  CV  D+ AFG
Sbjct:  547 IRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLNAFG 602
[Close]
BLAST of mRNA_F-serratus_M_contig871.20085.1 vs. uniprot
Match: A0A6H5K1X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1X4_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 7.190e-11
Identity = 30/56 (53.57%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:    1 LRTRRLLWAGTLLRMSSGRLPKRIVFGNLEGALRRGRGGKEKEWTDCVQSDIRAFG 168
            +R RRLL+AG L R   GRLPKR++ G L G  +R RGG+E+ W  CV  D++AFG
Sbjct:  219 IRQRRLLFAGALARQPDGRLPKRLMLGELAGGEKRRRGGQEQNWPKCVLDDLKAFG 274
[Close]
BLAST of mRNA_F-serratus_M_contig871.20085.1 vs. uniprot
Match: A0A6H5K2V9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2V9_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 6.380e-10
Identity = 27/50 (54.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:   19 LWAGTLLRMSSGRLPKRIVFGNLEGALRRGRGGKEKEWTDCVQSDIRAFG 168
            L+AG L R   GRLPKR++FG L G  +R RGG+E+ W  CV  D++AFG
Sbjct:  287 LFAGALARQPDGRLPKRLMFGELAGGEKRSRGGQEQNWPKCVLDDLKAFG 336
[Close]
BLAST of mRNA_F-serratus_M_contig871.20085.1 vs. uniprot
Match: A0A6H5JTZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTZ8_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 1.940e-9
Identity = 28/56 (50.00%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:    1 LRTRRLLWAGTLLRMSSGRLPKRIVFGNLEGALRRGRGGKEKEWTDCVQSDIRAFG 168
            +R RRLL+AG + R   GRLPKR+V G L G  +R   G+E+ W  CV  D++AFG
Sbjct:  176 IRQRRLLFAGAMARQPDGRLPKRLVLGELAGGEKRRSAGQEQNWPKCVLDDLKAFG 231
[Close]
BLAST of mRNA_F-serratus_M_contig871.20085.1 vs. uniprot
Match: A0A6H5KQ16_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ16_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 2.430e-9
Identity = 27/53 (50.94%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:    1 LRTRRLLWAGTLLRMSSGRLPKRIVFGNLEGALRRGRGGKEKEWTDCVQSDIR 159
            +R RR+L+AG L R   GRLPKR++FG L G  +R RGG+E+ W  CV  D++
Sbjct:  195 IRQRRILFAGALTRQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLK 247
[Close]
BLAST of mRNA_F-serratus_M_contig871.20085.1 vs. uniprot
Match: A0A6H5K2V4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2V4_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 6.950e-9
Identity = 28/56 (50.00%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:    1 LRTRRLLWAGTLLRMSSGRLPKRIVFGNLEGALRRGRGGKEKEWTDCVQSDIRAFG 168
            +R RRLL A  L R   GRLPKR++ G L G  +R RGG+++ W  CV  D++AFG
Sbjct:  175 IRQRRLLLARALARQPDGRLPKRLMLGELAGGEKRRRGGQKQNWPKCVLDDLKAFG 230
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig871.20085.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JYE2_9PHAE1.640e-1255.36Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JAH7_9PHAE4.950e-1255.36Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JFE2_9PHAE1.100e-1155.36Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JLT1_9PHAE1.110e-1155.36Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KS82_9PHAE2.090e-1155.36Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K1X4_9PHAE7.190e-1153.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2V9_9PHAE6.380e-1054.00Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JTZ8_9PHAE1.940e-950.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQ16_9PHAE2.430e-950.94Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K2V4_9PHAE6.950e-950.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig871contigF-serratus_M_contig871:349949..350168 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size222
Cds size219
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932549.907604-CDS-F-serratus_M_contig871:349948..3501671622932549.907604-CDS-F-serratus_M_contig871:349948..350167Fucus serratus maleCDSF-serratus_M_contig871 349949..350167 +
1690964361.0475225-CDS-F-serratus_M_contig871:349948..3501671690964361.0475225-CDS-F-serratus_M_contig871:349948..350167Fucus serratus maleCDSF-serratus_M_contig871 349949..350167 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig871.20085.1prot_F-serratus_M_contig871.20085.1Fucus serratus malepolypeptideF-serratus_M_contig871 349949..350167 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig871.20085.1

>prot_F-serratus_M_contig871.20085.1 ID=prot_F-serratus_M_contig871.20085.1|Name=mRNA_F-serratus_M_contig871.20085.1|organism=Fucus serratus male|type=polypeptide|length=73bp
LRTRRLLWAGTLLRMSSGRLPKRIVFGNLEGALRRGRGGKEKEWTDCVQS
DIRAFGISGDWKATALKTEVWVE
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mRNA from alignment at F-serratus_M_contig871:349949..350168+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig871.20085.1 ID=mRNA_F-serratus_M_contig871.20085.1|Name=mRNA_F-serratus_M_contig871.20085.1|organism=Fucus serratus male|type=mRNA|length=220bp|location=Sequence derived from alignment at F-serratus_M_contig871:349949..350168+ (Fucus serratus male)
TTGCGAACGAGAAGACTGCTGTGGGCGGGGACGCTCCTCAGAATGAGCAG
CGGGCGGCTGCCAAAGCGAATCGTTTTTGGAAACCTTGAGGGTGCACTAC
GGAGAGGACGGGGTGGGAAGGAGAAAGAGTGGACCGATTGCGTCCAGAGC
GACATCCGGGCGTTTGGCATATCCGGGGATTGGAAGGCGACGGCGTTAAA
GACTGAGGTGTGGGTTGAGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig871:349949..350168+

>mRNA_F-serratus_M_contig871.20085.1 ID=mRNA_F-serratus_M_contig871.20085.1|Name=mRNA_F-serratus_M_contig871.20085.1|organism=Fucus serratus male|type=CDS|length=438bp|location=Sequence derived from alignment at F-serratus_M_contig871:349949..350168+ (Fucus serratus male)
TTGCGAACGAGAAGACTGCTGTGGGCGGGGACGCTCCTCAGAATGAGCAG
CGGGCGGCTGCCAAAGCGAATCGTTTTTGGAAACCTTGAGGGTGCACTAC
GGAGAGGACGGGGTGGGAAGGAGAAAGAGTGGACCGATTGCGTCCAGAGC
GACATCCGGGCGTTTGGCATATCCGGGGATTGGAAGGCGACGGCGTTAAA
GACTGAGGTGTGGGTTGAGTTGCGAACGAGAAGACTGCTGTGGGCGGGGA
CGCTCCTCAGAATGAGCAGCGGGCGGCTGCCAAAGCGAATCGTTTTTGGA
AACCTTGAGGGTGCACTACGGAGAGGACGGGGTGGGAAGGAGAAAGAGTG
GACCGATTGCGTCCAGAGCGACATCCGGGCGTTTGGCATATCCGGGGATT
GGAAGGCGACGGCGTTAAAGACTGAGGTGTGGGTTGAG
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