mRNA_F-serratus_M_contig871.20084.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig871.20084.1
Unique NamemRNA_F-serratus_M_contig871.20084.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig871.20084.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig871contigF-serratus_M_contig871:323593..324292 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size392
Cds size390
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932548.7919993-CDS-F-serratus_M_contig871:323592..3236211622932548.7919993-CDS-F-serratus_M_contig871:323592..323621Fucus serratus maleCDSF-serratus_M_contig871 323593..323621 -
1690964360.4235802-CDS-F-serratus_M_contig871:323592..3236211690964360.4235802-CDS-F-serratus_M_contig871:323592..323621Fucus serratus maleCDSF-serratus_M_contig871 323593..323621 -
1622932548.8363562-CDS-F-serratus_M_contig871:323931..3242921622932548.8363562-CDS-F-serratus_M_contig871:323931..324292Fucus serratus maleCDSF-serratus_M_contig871 323932..324292 -
1690964360.4359362-CDS-F-serratus_M_contig871:323931..3242921690964360.4359362-CDS-F-serratus_M_contig871:323931..324292Fucus serratus maleCDSF-serratus_M_contig871 323932..324292 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig871.20084.1prot_F-serratus_M_contig871.20084.1Fucus serratus malepolypeptideF-serratus_M_contig871 323593..324292 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig871.20084.1

>prot_F-serratus_M_contig871.20084.1 ID=prot_F-serratus_M_contig871.20084.1|Name=mRNA_F-serratus_M_contig871.20084.1|organism=Fucus serratus male|type=polypeptide|length=130bp
FHLICIVVGGVGVVWVMTSEEEHGTAGNCHDGGEGSEDGENQEERKESKK
NTVDMRVEHSDKIENGNGKDYGNGHGNGGVENGRAGALEMTDDAAATAAT
AVVPASAGTPRVPREAPAGSDLATLPLLQK
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mRNA from alignment at F-serratus_M_contig871:323593..324292-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig871.20084.1 ID=mRNA_F-serratus_M_contig871.20084.1|Name=mRNA_F-serratus_M_contig871.20084.1|organism=Fucus serratus male|type=mRNA|length=700bp|location=Sequence derived from alignment at F-serratus_M_contig871:323593..324292- (Fucus serratus male)
TTCCACTTGATTTGCATCGTGGTGGGGGGCGTCGGCGTTGTGTGGGTGAT
GACGAGCGAGGAGGAGCACGGGACTGCCGGGAACTGCCACGACGGCGGCG
AGGGCAGCGAGGACGGCGAGAACCAAGAGGAACGCAAGGAGTCCAAGAAA
AATACGGTAGATATGAGGGTCGAACACAGCGATAAAATCGAAAATGGCAA
CGGCAAAGACTACGGAAATGGTCATGGAAACGGTGGCGTGGAAAACGGAC
GGGCGGGCGCCCTGGAGATGACTGACGATGCCGCCGCCACCGCCGCAACC
GCGGTAGTCCCTGCCTCCGCGGGCACGCCGCGAGTTCCCAGAGAGGCGCC
CGCCGGGTCAGGTGCTTTCCTGACGGCGGATACCGTTCGAATTTCGATTT
GTATCAGCATCTTTGCGGCGCACGGCTTGACTGCAATTGTTCTCTTCATC
CTCGTAATGAGAGCACCAGAGTGAAAAAAGGAGATACCAGACAAAATGAT
CGCGGGGAGGTTGGAACATTCTCCCCGACGCCCCCCCAACACAAAAACCA
TTCAAAATGTACTGAAGACCAATATAATATTTTTAAGGTGGCGCGCCCTA
GCCTTTCATCCTAAGCCTGGTAAACATATTGCCTCCCCCCCCCCCTCACC
CTACCCCCGCCGACGAGCCAGATCTAGCGACACTCCCGCTCTTACAGAAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig871:323593..324292-

>mRNA_F-serratus_M_contig871.20084.1 ID=mRNA_F-serratus_M_contig871.20084.1|Name=mRNA_F-serratus_M_contig871.20084.1|organism=Fucus serratus male|type=CDS|length=780bp|location=Sequence derived from alignment at F-serratus_M_contig871:323593..324292- (Fucus serratus male)
TTCCACTTGATTTGCATCGTGGTGGGGGGCGTCGGCGTTGTGTGGGTGAT
GACGAGCGAGGAGGAGCACGGGACTGCCGGGAACTGCCACGACGGCGGCG
AGGGCAGCGAGGACGGCGAGAACCAAGAGGAACGCAAGGAGTCCAAGAAA
AATACGGTAGATATGAGGGTCGAACACAGCGATAAAATCGAAAATGGCAA
CGGCAAAGACTACGGAAATGGTCATGGAAACGGTGGCGTGGAAAACGGAC
GGGCGGGCGCCCTGGAGATGACTGACGATGCCGCCGCCACCGCCGCAACC
GCGGTAGTCCCTGCCTCCGCGGGCACGCCGCGAGTTCCCAGAGAGGCGCC
CGCCGGGTCAGTTCCACTTGATTTGCATCGTGGTGGGGGGCGTCGGCGTT
GTGTGGGTGATGACGAGCGAGGAGGAGCACGGGACTGCCGGGAACTGCCA
CGACGGCGGCGAGGGCAGCGAGGACGGCGAGAACCAAGAGGAACGCAAGG
AGTCCAAGAAAAATACGGTAGATATGAGGGTCGAACACAGCGATAAAATC
GAAAATGGCAACGGCAAAGACTACGGAAATGGTCATGGAAACGGTGGCGT
GGAAAACGGACGGGCGGGCGCCCTGGAGATGACTGACGATGCCGCCGCCA
CCGCCGCAACCGCGGTAGTCCCTGCCTCCGCGGGCACGCCGCGAGTTCCC
AGAGAGGCGCCCGCCGGGTCAGATCTAGCGACACTCCCGCTCTTACAGAA
GATCTAGCGACACTCCCGCTCTTACAGAAG
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