prot_F-serratus_M_contig87.20060.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig87.20060.1
Unique Nameprot_F-serratus_M_contig87.20060.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length179
Homology
BLAST of mRNA_F-serratus_M_contig87.20060.1 vs. uniprot
Match: A0A6H5L1J4_9PHAE (F-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1J4_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 7.900e-32
Identity = 94/237 (39.66%), Postives = 122/237 (51.48%), Query Frame = 0
Query:    1 LWGRLCCRDFPSMAR-----AGAQIGLPAHQQYIRNVMLRAEEELGNLRSTLDVRKSLEAFT-----SRGGA-------------------------------GIIGMASDIASLPDPRIARAVSHKRRAALWSVVVTNERVIQEFRRRGLHRGPLNFLPIRALQHDRNLALS----------------IAATGSLGADRACPA-LXXXXXXXXXXXXFLGYVVRLIRLRPEHEHLR 179
            LWGRL   DFPS+A      A     L  HQQY++NVM RA +E+GNLR+   +R+SL++FT      RG A                                +IG+ SD+ ++PDPRIARA+S+KRRAAL +VVV N++V+ +FRRRGL+ GP+NFLP+  L  D    L+                + A    G  R   A L            FLGY VRL+RLRPEHE LR
Sbjct:  119 LWGRLNRCDFPSVAAPTDPAAQETNCLSPHQQYVKNVMRRAIDEVGNLRANHRLRESLDSFTWPIDWPRGNATTSGTIYSAISNTFGGGIDGRSSXXXXXXXXXVIGLLSDLVTVPDPRIARALSYKRRAALSTVVVDNDKVLFDFRRRGLYTGPVNFLPLSTLVVDNPTPLAPLLLPLLLPPPRRIGNVPAGTEDGDGREEGADLLPRAPESPAPAGFLGYAVRLLRLRPEHEPLR 355          
BLAST of mRNA_F-serratus_M_contig87.20060.1 vs. uniprot
Match: D8LKJ2_ECTSI (F-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKJ2_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 9.370e-16
Identity = 81/258 (31.40%), Postives = 106/258 (41.09%), Query Frame = 0
Query:    1 LWGRLCCRDFPSMARAG-AQIGLPA---------HQQYIRNVMLRAEEELGNLRSTLDVRKSLEAFT---------SR-----GGAG-------------------------------IIGMASDIASLPDPRIARAVSHKRRAALWSVVVTNERVIQEFRRRGLHRGPLNFLPIRALQHDR------------NLALSIAATGSLGADR------------ACPALXXXXXXXXXXXXFLGYVVRLIRLRPEHEHLR 179
            LW  LC  +FPSMA +  A  G+           HQQY+ NVM RA +++ NLRS   +RK L  +T         SR      G G                               +IG+ SD+ ++PDPRIARA+S K R  L  VVV N+ V    RR GL+   + FL + AL+ +             N   ++A     G  R            A   L            FLGY VRL++LRP HE LR
Sbjct:  205 LWRSLCRCEFPSMASSPTAAAGVREDKHSYLSHHHQQYVSNVMHRANDQVLNLRSNRHLRKRLYNYTWGNKDPQKSSRTINMTSGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVIGLLSDLVTVPDPRIARALSFKCRFVLSRVVVVNDNVSSSIRRSGLYTERVEFLSLSALRQESPSVLPRPPPTVSNDTAAVATASRSGGRRTDNGGGCREEVEAGANLLPLAPETPAPAGFLGYAVRLLQLRPGHESLR 462          
BLAST of mRNA_F-serratus_M_contig87.20060.1 vs. uniprot
Match: D8LKK0_ECTSI (F-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKK0_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 2.230e-10
Identity = 44/112 (39.29%), Postives = 56/112 (50.00%), Query Frame = 0
Query:   85 HKRRAALWSVVVTNERVIQEFRRRGLHRGPLNFLPIRALQHD-----------------RNLALSIAATGSLGADRACPALXXXXXXXXXXXXFLGYVVRLIRLRPEHEHLR 179
            H+RRAAL +VVV N++V+ +FRRRG + GP+NFLP+  L  D                 R + +  A T           L            FLGY VRL+RLRPEHE LR
Sbjct:  147 HQRRAALSTVVVDNDKVLFDFRRRGFYTGPVNFLPLSTLVMDNPTPLAPLLLPLLLPPQRRIGIVPAGTEDGDGREEGANLLPRAPESPAPAGFLGYAVRLLRLRPEHEPLR 258          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig87.20060.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L1J4_9PHAE7.900e-3239.66F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LKJ2_ECTSI9.370e-1631.40F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LKK0_ECTSI2.230e-1039.29F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036277SMCs flexible hinge superfamilySUPERFAMILY75553Smc hinge domaincoord: 29..126

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig87contigF-serratus_M_contig87:237132..240555 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig87.20060.1mRNA_F-serratus_M_contig87.20060.1Fucus serratus malemRNAF-serratus_M_contig87 237132..240555 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig87.20060.1 ID=prot_F-serratus_M_contig87.20060.1|Name=mRNA_F-serratus_M_contig87.20060.1|organism=Fucus serratus male|type=polypeptide|length=179bp
LWGRLCCRDFPSMARAGAQIGLPAHQQYIRNVMLRAEEELGNLRSTLDVR
KSLEAFTSRGGAGIIGMASDIASLPDPRIARAVSHKRRAALWSVVVTNER
VIQEFRRRGLHRGPLNFLPIRALQHDRNLALSIAATGSLGADRACPALPM
APELPEPPAGFLGYVVRLIRLRPEHEHLR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036277SMC_hinge_sf