mRNA_F-serratus_M_contig87.20060.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig87.20060.1
Unique NamemRNA_F-serratus_M_contig87.20060.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig87.20060.1 vs. uniprot
Match: A0A6H5L1J4_9PHAE (F-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1J4_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 7.900e-32
Identity = 94/237 (39.66%), Postives = 122/237 (51.48%), Query Frame = 1 
Query:    1 LWGRLCCRDFPSMAR-----AGAQIGLPAHQQYIRNVMLRAEEELGNLRSTLDVRKSLEAFT-----SRGGA-------------------------------GIIGMASDIASLPDPRIARAVSHKRRAALWSVVVTNERVIQEFRRRGLHRGPLNFLPIRALQHDRNLALS----------------IAATGSLGADRACPA-LXXXXXXXXXXXXFLGYVVRLIRLRPEHEHLR 537
            LWGRL   DFPS+A      A     L  HQQY++NVM RA +E+GNLR+   +R+SL++FT      RG A                                +IG+ SD+ ++PDPRIARA+S+KRRAAL +VVV N++V+ +FRRRGL+ GP+NFLP+  L  D    L+                + A    G  R   A L            FLGY VRL+RLRPEHE LR
Sbjct:  119 LWGRLNRCDFPSVAAPTDPAAQETNCLSPHQQYVKNVMRRAIDEVGNLRANHRLRESLDSFTWPIDWPRGNATTSGTIYSAISNTFGGGIDGRSSXXXXXXXXXVIGLLSDLVTVPDPRIARALSYKRRAALSTVVVDNDKVLFDFRRRGLYTGPVNFLPLSTLVVDNPTPLAPLLLPLLLPPPRRIGNVPAGTEDGDGREEGADLLPRAPESPAPAGFLGYAVRLLRLRPEHEPLR 355
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BLAST of mRNA_F-serratus_M_contig87.20060.1 vs. uniprot
Match: D8LKJ2_ECTSI (F-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKJ2_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 9.370e-16
Identity = 81/258 (31.40%), Postives = 106/258 (41.09%), Query Frame = 1 
Query:    1 LWGRLCCRDFPSMARAG-AQIGLPA---------HQQYIRNVMLRAEEELGNLRSTLDVRKSLEAFT---------SR-----GGAG-------------------------------IIGMASDIASLPDPRIARAVSHKRRAALWSVVVTNERVIQEFRRRGLHRGPLNFLPIRALQHDR------------NLALSIAATGSLGADR------------ACPALXXXXXXXXXXXXFLGYVVRLIRLRPEHEHLR 537
            LW  LC  +FPSMA +  A  G+           HQQY+ NVM RA +++ NLRS   +RK L  +T         SR      G G                               +IG+ SD+ ++PDPRIARA+S K R  L  VVV N+ V    RR GL+   + FL + AL+ +             N   ++A     G  R            A   L            FLGY VRL++LRP HE LR
Sbjct:  205 LWRSLCRCEFPSMASSPTAAAGVREDKHSYLSHHHQQYVSNVMHRANDQVLNLRSNRHLRKRLYNYTWGNKDPQKSSRTINMTSGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVIGLLSDLVTVPDPRIARALSFKCRFVLSRVVVVNDNVSSSIRRSGLYTERVEFLSLSALRQESPSVLPRPPPTVSNDTAAVATASRSGGRRTDNGGGCREEVEAGANLLPLAPETPAPAGFLGYAVRLLQLRPGHESLR 462
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BLAST of mRNA_F-serratus_M_contig87.20060.1 vs. uniprot
Match: D8LKK0_ECTSI (F-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKK0_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 2.230e-10
Identity = 44/112 (39.29%), Postives = 56/112 (50.00%), Query Frame = 1 
Query:  253 HKRRAALWSVVVTNERVIQEFRRRGLHRGPLNFLPIRALQHD-----------------RNLALSIAATGSLGADRACPALXXXXXXXXXXXXFLGYVVRLIRLRPEHEHLR 537
            H+RRAAL +VVV N++V+ +FRRRG + GP+NFLP+  L  D                 R + +  A T           L            FLGY VRL+RLRPEHE LR
Sbjct:  147 HQRRAALSTVVVDNDKVLFDFRRRGFYTGPVNFLPLSTLVMDNPTPLAPLLLPLLLPPQRRIGIVPAGTEDGDGREEGANLLPRAPESPAPAGFLGYAVRLLRLRPEHEPLR 258
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig87.20060.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L1J4_9PHAE7.900e-3239.66F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LKJ2_ECTSI9.370e-1631.40F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LKK0_ECTSI2.230e-1039.29F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig87contigF-serratus_M_contig87:237132..240555 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size539
Cds size537
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932544.8239589-CDS-F-serratus_M_contig87:237131..2375901622932544.8239589-CDS-F-serratus_M_contig87:237131..237590Fucus serratus maleCDSF-serratus_M_contig87 237132..237590 -
1690964358.657866-CDS-F-serratus_M_contig87:237131..2375901690964358.657866-CDS-F-serratus_M_contig87:237131..237590Fucus serratus maleCDSF-serratus_M_contig87 237132..237590 -
1622932544.8467555-CDS-F-serratus_M_contig87:240477..2405551622932544.8467555-CDS-F-serratus_M_contig87:240477..240555Fucus serratus maleCDSF-serratus_M_contig87 240478..240555 -
1690964358.6668098-CDS-F-serratus_M_contig87:240477..2405551690964358.6668098-CDS-F-serratus_M_contig87:240477..240555Fucus serratus maleCDSF-serratus_M_contig87 240478..240555 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig87.20060.1prot_F-serratus_M_contig87.20060.1Fucus serratus malepolypeptideF-serratus_M_contig87 237132..240555 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig87.20060.1

>prot_F-serratus_M_contig87.20060.1 ID=prot_F-serratus_M_contig87.20060.1|Name=mRNA_F-serratus_M_contig87.20060.1|organism=Fucus serratus male|type=polypeptide|length=179bp
LWGRLCCRDFPSMARAGAQIGLPAHQQYIRNVMLRAEEELGNLRSTLDVR
KSLEAFTSRGGAGIIGMASDIASLPDPRIARAVSHKRRAALWSVVVTNER
VIQEFRRRGLHRGPLNFLPIRALQHDRNLALSIAATGSLGADRACPALPM
APELPEPPAGFLGYVVRLIRLRPEHEHLR
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mRNA from alignment at F-serratus_M_contig87:237132..240555-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig87.20060.1 ID=mRNA_F-serratus_M_contig87.20060.1|Name=mRNA_F-serratus_M_contig87.20060.1|organism=Fucus serratus male|type=mRNA|length=3424bp|location=Sequence derived from alignment at F-serratus_M_contig87:237132..240555- (Fucus serratus male)
TTATGGGGCCGTCTCTGCTGCCGTGATTTTCCCTCGATGGCTCGAGCAGG
AGCTCAGATAGGGCTTCCTGCTCACCAGGTGAGAATATCTCTTCTTCTCC
CCCCTCGTAGGATTTCTGTGAGCGCGGGCTATTTCGTACCGCGATTAGCG
ATTAGACATTCCATGGGAATTATAACTGTTCGAATTAGGAGAGTGCGTAT
TTATACGGAGTAATATTTATATTTATACCTGGTACTTCTGAGGGAAATTA
GGAGTACTGGACACACTCATACAGTAGTATGTGTGTAGAGCCTACGTTTA
AAGAAAAAAATCAAAACGTTTAGGCGGTATCAAAGGCGCGATTAGCGATT
AGACATTCCATGGGAATTATAACTGTTCAAATTAGACTGCGTATTTATAC
GGAGTAATATTTATATTTATACTTCTGAGGGAAATTAGGGTACTGGACAC
ACTCATGCAGTAGCATGTGTGTAGAGCCTACTTGGTTTGAAGAAAATACA
GAACGCACCTATAGACCTTCTGAGCTGTTTTTCCACATTAACCGATCGGG
CCTCAACCATACGCAGTAATATACGTGGTTGCCAATCCGGTACGTGGTCT
GCTGGACAGAAAAAGATCAGAGGAACATCTACACACAGCTACAACGAGAA
CAAAAAGACAAAACACAAACGACAAAAAGAAAAGGAGGAACGATGACCAA
ATAAACATACCAGAGAAAGAAAGAAGAAGGGCACTCGATGGAAAGAGTTT
GGTATACTGCCAGCCGCGAGCCATCTGATACCCTCCCCGAATCGCAACCA
TGCACCCAACCGCGCAGCATCTACCGCACTCCGTACTCTCAGAGGTTTCG
GTTATCTCTAACGGCACGGTCGACGTCGCTTAGGGAGTCCTACAGTTGGT
CCAATCAACGCGGCCCGAAAACGTCTCAAGCTTGCTGCAGATGCATGTAT
GTACTGTGTGTGTGTGTATTTATTAAATTGCAAAAACAAAACAAAACAAA
AAACATACGGTAAGCCGGTCGCCCCGGTAGCTTAGAGGTACCTCGTAACC
CTCTGACACGTTGGAACGTGAGTTCGATCCCGGCAAACGGGATTTTTCTC
ACTAAAAAAATAAAAACGAAAATAAAAATGCTCAACTATATTAGTGGAAA
ACGATTAATTCGTTAGTACACAAAATTCGACTTCACGGTCGACGAGGGAA
AGGAATGGCTGAATCCTAATCCTTCTCGCGATAAAAATTAAGGCACGCAC
CGCAGAAGGAAAGTGGATGAGAAATCCTGTGTTACCTTCCTCCTGTGTGA
CCCCGACTGGTACGTACATTGATGTCCAGAATAGATGGGAAGAAAAAAAA
AACACACACACACATAACCGCGCAATCCGGCCCTGTCATCCTAGTCATTC
TATGCCACTCGGATTGATCCTCCCAAGGGGTGATCAATCATACTTGTTAC
GAAAACCTCTGATCAGACGCGACAAACAATCTCTACTTGTACAATGCTTA
CTTGAGCCCTGGGTACATTGTGTTCCCCTCCCTGCTTCCTTGTTACTCTC
TAGATTATCTGGGTTGGCAACGTGTGTGTGTGTGTATTGTCTTCCCATTT
ATTCTGGACGTCGGTATGTTGGACGTACCAGTACCAGCCGGGGTCACACA
GGAGGAAGGTCACACAGGATTTCTCATCCACCTTCCTTCTGCGATGCTTG
CCTTAATTTTTATCGCGAGAAGGATTCACCCGTTCCTTTCCCTCGTCGAC
CGTGAAGTCGAATTTTCGTGTACTAACGAATCAATCATTCTCCACTTGTT
GGGTATTTTTTATTTTTGTGTGTGTAAGAGTAAAATCCCAGTTCGTGTGA
CTGCACCGGGATTCGAACTCACGTCCCACCGTCAAAAGACTTCGAGGTTA
CCAAGTGAACCACCGGCGCGACCGGGTGTGTGTATGTGTGGTTAGTCATC
ACATATACTGTAGCAGAGTATGGATCAACCGGGCAAGGCTACAAATCCTG
CTCGTGGTCAGCTGAACAGGGAAAATGAATATTTCCCTGTCCCCGTTCGC
GCCAAAGAATTTGGTCTCGCGAGATGAGTCCAGCCGTCCCATCCCGCGCC
AGCCTGCTCATTCTCCACACCTCACAGGCTGAATCTGATGCTTACTCACG
GAATTCCTCCCGATTTCCGCGTCCATTTATTTATTTGAACTGGCATACGC
CATCGGCTCAGTCCCGAGTTTATCGGTTCACACATTTGCGTACCGAAGTC
GTTTACTGCCGAGAGTCCGCCGGCACAGGGCCAGTAGTCATAGTCCTCAA
GGTAGTCCCAGTAACGGGTGCTGCCTTTGTGCATCACCATGGACTATGAC
CAATTAATGTGTGCCTCTCTTTTCCCCCACACCCACTATACTTTATATAG
TATTATTGGTATGAAGCGGGCATGTTGAAAGTATCGAATATTGAAGCTCA
AACGGTTAGCCAGTCCTATACCTGCCTGTACAGTTAGTTCTCTCTCCCAG
CTGCCTTATGGCGAGGAGTGACATTTACACGCCGTTGACCTCGTAAGCTG
CCTAGCGAGCACAAAATTAACGCAATCGACTTACCGATTACGGCTGATGC
TGCTTTCGTTTATTTTTCGTCGAAGACAACGAGATCGACAAAACCATACG
AGTACTTCGTATACAGTTCTATGCCTTAGTTTGGGTTAGCTTGTGACCAC
AGAAATTCGTTTCTTTACCCTGAAGAGTAAGAAAGAGAAGGTACTGGATA
GAGGTCAGAACGGTTTTTAATGTCTAAACAACAACAACAAGTACATATTA
TTTATAGAACTTGTTATAGTACATATTATAGTACATATTATTATTGTTAC
CTGTAGAAGTACATATTTTCACTTCAAGATGAGCCCTCAATAAAAAAAAT
CACATGTGCATAGTATGTATAATTTACTTTGAATTGCCTACTACCTGCTG
CACTTTCACCGCCAGCAATACATCAGGAACGTCATGCTTCGCGCGGAAGA
GGAGCTCGGCAACCTGCGTTCCACGCTCGACGTTCGGAAAAGTCTCGAGG
CCTTCACCAGTCGCGGCGGCGCCGGCATCATCGGAATGGCGAGCGACATA
GCCAGCCTTCCTGACCCGCGCATCGCCCGTGCCGTATCCCACAAGCGCCG
CGCAGCCCTCTGGTCGGTGGTGGTCACCAACGAACGGGTGATCCAGGAAT
TCCGCCGCCGCGGTCTGCACCGGGGACCGCTGAATTTTCTGCCCATTCGG
GCGCTCCAACACGACCGCAATCTCGCGCTGTCGATCGCTGCAACGGGCAG
TCTTGGTGCAGACCGCGCTTGCCCCGCGCTGCCCATGGCTCCCGAGCTTC
CTGAGCCGCCTGCAGGGTTCCTGGGGTACGTGGTACGACTCATACGGCTT
CGTCCAGAGCACGAGCACTTGCGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig87:237132..240555-

>mRNA_F-serratus_M_contig87.20060.1 ID=mRNA_F-serratus_M_contig87.20060.1|Name=mRNA_F-serratus_M_contig87.20060.1|organism=Fucus serratus male|type=CDS|length=1074bp|location=Sequence derived from alignment at F-serratus_M_contig87:237132..240555- (Fucus serratus male)
TTATGGGGCCGTCTCTGCTGCCGTGATTTTCCCTCGATGGCTCGAGCAGG
AGCTCAGATAGGGCTTCCTGCTCACCAGTTATGGGGCCGTCTCTGCTGCC
GTGATTTTCCCTCGATGGCTCGAGCAGGAGCTCAGATAGGGCTTCCTGCT
CACCAGCAATACATCAGGAACGTCATGCTTCGCGCGGAAGAGGAGCTCGG
CAACCTGCGTTCCACGCTCGACGTTCGGAAAAGTCTCGAGGCCTTCACCA
GTCGCGGCGGCGCCGGCATCATCGGAATGGCGAGCGACATAGCCAGCCTT
CCTGACCCGCGCATCGCCCGTGCCGTATCCCACAAGCGCCGCGCAGCCCT
CTGGTCGGTGGTGGTCACCAACGAACGGGTGATCCAGGAATTCCGCCGCC
GCGGTCTGCACCGGGGACCGCTGAATTTTCTGCCCATTCGGGCGCTCCAA
CACGACCGCAATCTCGCGCTGTCGATCGCTGCAACGGGCAGTCTTGGTGC
AGACCGCGCTTGCCCCGCGCTGCCCATGGCTCCCGAGCTTCCTGAGCCGC
CTGCAGGGTTCCTGGGGTACGTGGTACGACTCATACGGCTTCGTCCAGAG
CACGAGCACTTGCGGCAATACATCAGGAACGTCATGCTTCGCGCGGAAGA
GGAGCTCGGCAACCTGCGTTCCACGCTCGACGTTCGGAAAAGTCTCGAGG
CCTTCACCAGTCGCGGCGGCGCCGGCATCATCGGAATGGCGAGCGACATA
GCCAGCCTTCCTGACCCGCGCATCGCCCGTGCCGTATCCCACAAGCGCCG
CGCAGCCCTCTGGTCGGTGGTGGTCACCAACGAACGGGTGATCCAGGAAT
TCCGCCGCCGCGGTCTGCACCGGGGACCGCTGAATTTTCTGCCCATTCGG
GCGCTCCAACACGACCGCAATCTCGCGCTGTCGATCGCTGCAACGGGCAG
TCTTGGTGCAGACCGCGCTTGCCCCGCGCTGCCCATGGCTCCCGAGCTTC
CTGAGCCGCCTGCAGGGTTCCTGGGGTACGTGGTACGACTCATACGGCTT
CGTCCAGAGCACGAGCACTTGCGG
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