mRNA_F-serratus_M_contig87.20059.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig87.20059.1
Unique NamemRNA_F-serratus_M_contig87.20059.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig87.20059.1 vs. uniprot
Match: D8LKJ4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKJ4_ECTSI)

HSP 1 Score: 197 bits (500), Expect = 3.880e-57
Identity = 130/243 (53.50%), Postives = 151/243 (62.14%), Query Frame = 3 
Query:  420 IDACLRRWKAARHDGQAVLARLSNALLLRTYVDEARGASVSGDISDGISGGGAHVWGALASAGTSVSRVALATEARVRRLHGDLSALQDAMVAAAAGVRRHAQEARLQCKRFSAGEDAALDVCAAPSSTAAGGKRGIKAASTTGFTIL-----------------------VGGGYAMEDVANAASEVSEMLLQEALVTATVARGVGE--CQDDRNALTVYAAAWMMQPYLDARRLRELEVMV 1073
            ID CLRRWKAARH+GQAVL  LSNALLLRTYVD  +G            G    VWGALA AGT+VSRV++ATE R RRLHGDLSALQDAMVAAA  +RRHA+E R +     AG +             +G   G KA                                VGGGYA+ DVA+  S+V+EML++EALVTATV +GVG+   +DDR ALTVYAAAWMMQPY+DA RL+ELEVMV
Sbjct:   30 IDGCLRRWKAARHEGQAVLTDLSNALLLRTYVD--KGXXXXXXXRAATDGA---VWGALAGAGTTVSRVSVATEHRARRLHGDLSALQDAMVAAAGELRRHAREVRRRWVSARAGGE---------DHRTSGSSSGAKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVGGGYALVDVADTTSQVAEMLMKEALVTATVVQGVGQEHGRDDREALTVYAAAWMMQPYVDAGRLKELEVMV 258
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BLAST of mRNA_F-serratus_M_contig87.20059.1 vs. uniprot
Match: A0A835ZE08_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE08_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.110e-11
Identity = 70/224 (31.25%), Postives = 95/224 (42.41%), Query Frame = 3 
Query:  408 ILAGIDACLRRWKAARHDGQAVLARLSNALLLRTYVDEARGASVSGDISDGISGGGAHVWGALASAGTSV-SRVALATEARVRRLHGDLSALQDAMVAAAAGVRRHAQEARLQCKRFSAGEDAALDVCAAPSSTAAGGKRGIKAASTTGFTILVGGGYAMEDVANAASEVSEMLLQEALVTATVARGVGECQDDRNALTVYAAAWMMQPYLDARRLRELEVMVE 1076
            +L  I+  L RW   + +GQ +L+ LSNA L R++V +   A                 WG LA  GTSV   VAL  EA+V +L  DL  +   +   A  V                     +D  A       GG  G              GGY+  D+A AA  +  ML +E  V   V    G+C   R+ LT+YAAAWMMQPY++    ++L  M E
Sbjct:   12 LLQEINLDLHRWTVHKAEGQGLLSELSNASLSRSFVSDTSSA-----------------WGPLA--GTSVPGTVALKLEAKVCKLQLDLQGVVTNLAGCAKSV---------------------IDTAAQLQEQHGGGADGWH-----------NGGYSAADIAQAALALGRMLEREVAVAEAVCADAGDCSS-RDTLTLYAAAWMMQPYMERGLWKDLLRMTE 183
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig87.20059.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKJ4_ECTSI3.880e-5753.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZE08_9STRA1.110e-1131.25Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig87contigF-serratus_M_contig87:232337..233514 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-16_003180.1
Exons1
Model size1178
Cds size774
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig87.20059.1prot_F-serratus_M_contig87.20059.1Fucus serratus malepolypeptideF-serratus_M_contig87 232657..233430 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932544.7488132-UTR-F-serratus_M_contig87:232336..2326561622932544.7488132-UTR-F-serratus_M_contig87:232336..232656Fucus serratus maleUTRF-serratus_M_contig87 232337..232656 +
1690964358.6291459-UTR-F-serratus_M_contig87:232336..2326561690964358.6291459-UTR-F-serratus_M_contig87:232336..232656Fucus serratus maleUTRF-serratus_M_contig87 232337..232656 +
1622932544.7780778-UTR-F-serratus_M_contig87:233430..2335141622932544.7780778-UTR-F-serratus_M_contig87:233430..233514Fucus serratus maleUTRF-serratus_M_contig87 233431..233514 +
1690964358.6492836-UTR-F-serratus_M_contig87:233430..2335141690964358.6492836-UTR-F-serratus_M_contig87:233430..233514Fucus serratus maleUTRF-serratus_M_contig87 233431..233514 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932544.765976-CDS-F-serratus_M_contig87:232656..2334301622932544.765976-CDS-F-serratus_M_contig87:232656..233430Fucus serratus maleCDSF-serratus_M_contig87 232657..233430 +
1690964358.639975-CDS-F-serratus_M_contig87:232656..2334301690964358.639975-CDS-F-serratus_M_contig87:232656..233430Fucus serratus maleCDSF-serratus_M_contig87 232657..233430 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig87.20059.1

>prot_F-serratus_M_contig87.20059.1 ID=prot_F-serratus_M_contig87.20059.1|Name=mRNA_F-serratus_M_contig87.20059.1|organism=Fucus serratus male|type=polypeptide|length=258bp
MSSLREATDRSADHSGQTAEGDTNDVVGDILAGIDACLRRWKAARHDGQA
VLARLSNALLLRTYVDEARGASVSGDISDGISGGGAHVWGALASAGTSVS
RVALATEARVRRLHGDLSALQDAMVAAAAGVRRHAQEARLQCKRFSAGED
AALDVCAAPSSTAAGGKRGIKAASTTGFTILVGGGYAMEDVANAASEVSE
MLLQEALVTATVARGVGECQDDRNALTVYAAAWMMQPYLDARRLRELEVM
VEARRRN*
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mRNA from alignment at F-serratus_M_contig87:232337..233514+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig87.20059.1 ID=mRNA_F-serratus_M_contig87.20059.1|Name=mRNA_F-serratus_M_contig87.20059.1|organism=Fucus serratus male|type=mRNA|length=1178bp|location=Sequence derived from alignment at F-serratus_M_contig87:232337..233514+ (Fucus serratus male)
ATCAACTGAAAGCGGGCAAGAAATGCTCGAAAACGGCTTGCATGTTGCCC
CGAGAGACCGATATTTTTGGTGCCGTGTAACCGACCTGGATAAAGAACCT
GTCTTGCCGCTCGAGCTAGGCGCGACTGGCCCCAGCTGTGAAGCATTCGT
GATCTCGCGCCCCTCTTGACTCGCTACCCGCCCGCCGTCTCGTGGTGCTC
TTGTAGGAAACGCATAAAGACCCGTCATCACCCTGCGGGAGCCGGTCGCG
ACGTTAATTTAGGACAACAGTATAACAAGTGTAGTCCATCCTTGACGGGG
TGCGAGGGAGGAGGGCGTTGATGAGTTCACTCCGGGAGGCAACCGACCGG
TCGGCCGATCACTCGGGCCAGACTGCGGAAGGAGACACAAACGATGTCGT
CGGCGACATCTTAGCGGGGATAGACGCCTGCCTCCGGCGATGGAAAGCCG
CGCGGCACGACGGCCAAGCCGTCTTGGCGCGGCTGAGCAACGCCCTCTTG
CTCAGAACCTATGTGGACGAGGCAAGAGGCGCCTCAGTCAGCGGAGATAT
CAGCGACGGTATTAGCGGTGGTGGTGCTCATGTTTGGGGCGCGCTTGCCT
CGGCAGGAACGTCGGTGTCAAGGGTAGCCCTCGCCACGGAAGCGCGCGTC
CGTCGTCTCCACGGTGACCTTAGCGCTCTTCAAGACGCGATGGTAGCCGC
CGCGGCGGGGGTCCGCCGGCACGCCCAGGAAGCGCGACTCCAGTGCAAAC
GCTTCTCTGCTGGAGAGGATGCCGCCCTTGACGTTTGCGCCGCCCCCTCG
AGCACCGCGGCGGGCGGGAAACGTGGCATTAAGGCCGCATCCACGACAGG
CTTTACCATCTTGGTAGGAGGTGGTTACGCGATGGAAGATGTTGCGAACG
CGGCTTCGGAGGTATCAGAGATGTTGCTGCAGGAAGCTCTCGTTACCGCT
ACGGTAGCGCGCGGGGTGGGAGAGTGCCAGGATGACCGAAATGCGTTGAC
GGTGTACGCCGCGGCATGGATGATGCAGCCATATCTGGACGCCCGGCGGT
TGAGAGAGCTCGAAGTCATGGTTGAGGCAAGGAGGCGGAACTGAAATTCG
AAACGGTCGGCGAGCGCTTTTGTTGCTGTTGCACCGAGGTAAACGTCATT
GGCAGTTGCGCGCGCCGGAATCTCGCCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig87:232337..233514+

>mRNA_F-serratus_M_contig87.20059.1 ID=mRNA_F-serratus_M_contig87.20059.1|Name=mRNA_F-serratus_M_contig87.20059.1|organism=Fucus serratus male|type=CDS|length=1548bp|location=Sequence derived from alignment at F-serratus_M_contig87:232337..233514+ (Fucus serratus male)
ATGAGTTCACTCCGGGAGGCAACCGACCGGTCGGCCGATCACTCGGGCCA
GACTGCGGAAGGAGACACAAACGATGTCGTCGGCGACATCTTAGCGGGGA
TAGACGCCTGCCTCCGGCGATGGAAAGCCGCGCGGCACGACGGCCAAGCC
GTCTTGGCGCGGCTGAGCAACGCCCTCTTGCTCAGAACCTATGTGGACGA
GGCAAGAGGCGCCTCAGTCAGCGGAGATATCAGCGACGGTATTAGCGGTG
GTGGTGCTCATGTTTGGGGCGCGCTTGCCTCGGCAGGAACGTCGGTGTCA
AGGGTAGCCCTCGCCACGGAAGCGCGCGTCCGTCGTCTCCACGGTGACCT
TAGCGCTCTTCAAGACGCGATGGTAGCCGCCGCGGCGGGGGTCCGCCGGC
ACGCCCAGGAAGCGCGACTCCAGTGCAAACGCTTCTCTGCTGGAGAGGAT
GCCGCCCTTGACGTTTGCGCCGCCCCCTCGAGCACCGCGGCGGGCGGGAA
ACGTGGCATTAAGGCCGCATCCACGACAGGCTTTACCATCTTGGTAGGAG
GTGGTTACGCGATGGAAGATGTTGCGAACGCGGCTTCGGAGGTATCAGAG
ATGTTGCTGCAGGAAGCTCTCGTTACCGCTACGGTAGCGCGCGGGGTGGG
AGAGTGCCAGGATGACCGAAATGCGTTGACGGTGTACGCCGCGGCATGGA
TGATGCAGCCATATCTGGACGCCCGGCGGTTGAGAGAGCTCGAAGTCATG
GTTGAGGCAAGGAGGCGGAACTGAATGAGTTCACTCCGGGAGGCAACCGA
CCGGTCGGCCGATCACTCGGGCCAGACTGCGGAAGGAGACACAAACGATG
TCGTCGGCGACATCTTAGCGGGGATAGACGCCTGCCTCCGGCGATGGAAA
GCCGCGCGGCACGACGGCCAAGCCGTCTTGGCGCGGCTGAGCAACGCCCT
CTTGCTCAGAACCTATGTGGACGAGGCAAGAGGCGCCTCAGTCAGCGGAG
ATATCAGCGACGGTATTAGCGGTGGTGGTGCTCATGTTTGGGGCGCGCTT
GCCTCGGCAGGAACGTCGGTGTCAAGGGTAGCCCTCGCCACGGAAGCGCG
CGTCCGTCGTCTCCACGGTGACCTTAGCGCTCTTCAAGACGCGATGGTAG
CCGCCGCGGCGGGGGTCCGCCGGCACGCCCAGGAAGCGCGACTCCAGTGC
AAACGCTTCTCTGCTGGAGAGGATGCCGCCCTTGACGTTTGCGCCGCCCC
CTCGAGCACCGCGGCGGGCGGGAAACGTGGCATTAAGGCCGCATCCACGA
CAGGCTTTACCATCTTGGTAGGAGGTGGTTACGCGATGGAAGATGTTGCG
AACGCGGCTTCGGAGGTATCAGAGATGTTGCTGCAGGAAGCTCTCGTTAC
CGCTACGGTAGCGCGCGGGGTGGGAGAGTGCCAGGATGACCGAAATGCGT
TGACGGTGTACGCCGCGGCATGGATGATGCAGCCATATCTGGACGCCCGG
CGGTTGAGAGAGCTCGAAGTCATGGTTGAGGCAAGGAGGCGGAACTGA
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