mRNA_F-serratus_M_contig87.20053.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig87.20053.1
Unique NamemRNA_F-serratus_M_contig87.20053.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig87.20053.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig87contigF-serratus_M_contig87:14823..16866 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size407
Cds size204
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig87.20053.1prot_F-serratus_M_contig87.20053.1Fucus serratus malepolypeptideF-serratus_M_contig87 15025..16866 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932543.755623-UTR-F-serratus_M_contig87:14822..150241622932543.755623-UTR-F-serratus_M_contig87:14822..15024Fucus serratus maleUTRF-serratus_M_contig87 14823..15024 -
1690964358.172711-UTR-F-serratus_M_contig87:14822..150241690964358.172711-UTR-F-serratus_M_contig87:14822..15024Fucus serratus maleUTRF-serratus_M_contig87 14823..15024 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932543.7805645-CDS-F-serratus_M_contig87:15024..151281622932543.7805645-CDS-F-serratus_M_contig87:15024..15128Fucus serratus maleCDSF-serratus_M_contig87 15025..15128 -
1690964358.1849287-CDS-F-serratus_M_contig87:15024..151281690964358.1849287-CDS-F-serratus_M_contig87:15024..15128Fucus serratus maleCDSF-serratus_M_contig87 15025..15128 -
1622932543.801685-CDS-F-serratus_M_contig87:16766..168661622932543.801685-CDS-F-serratus_M_contig87:16766..16866Fucus serratus maleCDSF-serratus_M_contig87 16767..16866 -
1690964358.1954122-CDS-F-serratus_M_contig87:16766..168661690964358.1954122-CDS-F-serratus_M_contig87:16766..16866Fucus serratus maleCDSF-serratus_M_contig87 16767..16866 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig87.20053.1

>prot_F-serratus_M_contig87.20053.1 ID=prot_F-serratus_M_contig87.20053.1|Name=mRNA_F-serratus_M_contig87.20053.1|organism=Fucus serratus male|type=polypeptide|length=68bp
RNSTRLSGPTGNKGSSSSGSECECSSEGKDEVGGDNGGLSMTEEAIANIW
EQGPPRDNDDAWAYYYF*
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mRNA from alignment at F-serratus_M_contig87:14823..16866-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig87.20053.1 ID=mRNA_F-serratus_M_contig87.20053.1|Name=mRNA_F-serratus_M_contig87.20053.1|organism=Fucus serratus male|type=mRNA|length=2044bp|location=Sequence derived from alignment at F-serratus_M_contig87:14823..16866- (Fucus serratus male)
AGGAATTCAACACGGCTTTCTGGGCCTACTGGTAACAAGGGGAGCTCCAG
CTCCGGCTCTGAATGTGAATGCTCTTCGGAAGGCAAGGATGAAGTCGGAG
GTGGGTGCTCATGGCTTCAAGAGCTCCAACAAGAAGAGGGTGCATGTAAT
GAATCCGTTAAAAGCGTGTCCTTCCCATGCCTTCTGTTAGCCAGCTGTCT
AGCGGTAACATCTGGTGCTCCATGTGTAGAGCTACTACATTACTGTACTA
TACAAATGTGCTATACTATAATATACTGGTACAGTGTTATACAGTACAGT
ACTATAAAGTGGCTGTGCCATTACTAATAATTCGACTTTAATATAATTGT
ACCTCATGACGAGTAGTACCAGTATTAATATTACTATTAATATTAACTAA
CAGTATATTTTTTACATTTCCAGCTAATTACCGCCATACCTGATACATGG
TACACGATATTTTCCTGGAGCACGCAGCTGAGACCTTGTTTCTTTCCTTC
ATTAGGTCAGAGTCTCAGCCATGATATCCGATCAAGATGAATATAGATCT
TGGTGGGAGGATTCATACCCTAACCCTCCCATGCCTGCGCCTGAACCTGA
TGAATGGTTCAACGAGTACTTTTCTCACAATTTTTTGTCAGTAATTTCTC
AAAACAAATACTTGGTCGCTTACTGTTATTTTCGTGTTGAAGTATTACAA
GTATTACAGGTATTAGAAGGGTCATGCCTAGCAGTAGTAATAGTAACACG
AATTCCTTCAAGTTTCAACGCGTCAACGAGAGAGCATTACACAAATATTG
TTAGTATCGAATAATGTATGTATGGTAATCACCCATAGCAGAGTATGGAT
CAACCGGGTAAGGTTGCCAATCCTGCTGTGGTCAGCTGGACAGGAAAAAT
GTTTTTCCCTGTCCTCGTTCGCGCCTGATGATTTGGCCTCGCGAGACACG
TCTGGCCGTCCCGTCCCGCGTGAGCTTGCTCATTCTCCACACTCGGGTTG
AATCTGGTGTATGTGTGGCGATTGCCACCAGCCCGAAGAGGAAAAAAAAC
AAAAAAAAATGAGCATAAAATATATCAATCTTTTCCGGCTGTTTGGGCGT
CGGCACCACTCGGACGAACAAACAATTACACACATACTACAAGAAGGTCA
TGGGACTACTCATGTAAGATATTAGACTAGACTAGTCAATCTGCGGAGTA
AAAGACGCGAAACGACAACAGACATTCAACCCACATTCACCCCACGGCCT
ATATGCGATTAGTCACTTAATAGTCATAGTCACTGTAATAGTGGTATTTT
TCAGCATATTAGTCACTGACACTACATCAGGTATAATGGCGGTACGTTGT
GGGTCTGAATGGTTCGTCTTGAGTGGACAATAATCGCTTCTCGAGCAGAT
ATACTATTAGATTAATACTAATATTAATACAACATTGCACGTATTTCTAA
CAATCTATTATGTTCGTCGTGGGACAGATACGAGTAAATATAGTACAAAG
TATATATAGTATTTCGTATAGCATATGGTTAGTACTGTAGGTGAGAGGAG
AGGTGGACCTTCCAAGGGACAAGGGACAAGCGAACATACCTCACTGAAAC
AGGGGAATCTATATTTTAACCGACACAATGACATTATCATGACGAACGAC
TTACTTGAACAAACTATATAAACTACAAGTATTTATACCCATGAGGTACT
GTACGTACGGCACGCCTTCGATGTCTCGCCGTGTGCAGGGGACAATGGAG
GTCTATCCATGACCGAAGAAGCGATTGCCAACATCTGGGAGCAGGGCCCT
CCCAGGGACAACGACGACGCCTGGGCCTACTACTATTTCTGAAATCAAGA
TATGCTCTTATAATAGGCGGATGGTTAACAATTCCGAGTACAGTACACGA
GTTTACTATTAATAATTCATGTACTGTGCTTCAGAAGTTTTTGGCGTGAC
TTGGGATCTTCAGAGCGCCAAATACCAAAGAAGTACGGCCTATCTCGAGT
CTGGATGAGTCTCTGAAGCCTTTACATAATCAACACGAGGTATG
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Coding sequence (CDS) from alignment at F-serratus_M_contig87:14823..16866-

>mRNA_F-serratus_M_contig87.20053.1 ID=mRNA_F-serratus_M_contig87.20053.1|Name=mRNA_F-serratus_M_contig87.20053.1|organism=Fucus serratus male|type=CDS|length=408bp|location=Sequence derived from alignment at F-serratus_M_contig87:14823..16866- (Fucus serratus male)
AGGAATTCAACACGGCTTTCTGGGCCTACTGGTAACAAGGGGAGCTCCAG
CTCCGGCTCTGAATGTGAATGCTCTTCGGAAGGCAAGGATGAAGTCGGAG
AGGAATTCAACACGGCTTTCTGGGCCTACTGGTAACAAGGGGAGCTCCAG
CTCCGGCTCTGAATGTGAATGCTCTTCGGAAGGCAAGGATGAAGTCGGAG
GGGACAATGGAGGTCTATCCATGACCGAAGAAGCGATTGCCAACATCTGG
GAGCAGGGCCCTCCCAGGGACAACGACGACGCCTGGGCCTACTACTATTT
CTGAGGGACAATGGAGGTCTATCCATGACCGAAGAAGCGATTGCCAACAT
CTGGGAGCAGGGCCCTCCCAGGGACAACGACGACGCCTGGGCCTACTACT
ATTTCTGA
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