mRNA_F-serratus_M_contig869.20046.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig869.20046.1
Unique NamemRNA_F-serratus_M_contig869.20046.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig869.20046.1 vs. uniprot
Match: D8LJE2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJE2_ECTSI)

HSP 1 Score: 164 bits (415), Expect = 1.330e-42
Identity = 98/174 (56.32%), Postives = 117/174 (67.24%), Query Frame = 3 
Query:    6 RQGKSREEVPGGIFVTPSRLQEASLCSTAVEQAALEQRMREEFHEGSAHQEPTDPVRRASATSVVNVPPKAITYEGLVPVSLDAPPPRQRRTGKQVSKAHLSKVEERRITEDDLAYADMEPRPRGFLAGGGPGGFGRALSQGSEELEWFGGRPTAIDFGDASMTSDRVWSLGLR 527
            R+G S +      FV PSR+QE SL STA EQA LE+RM EEF +GS   EP  PV RA+A + VN+ P A T+EGLVPVSLDAPPPR +R GKQVSK+HLSKV+E+RITE+DLA+  MEP     + G G    GR      EELEW+GGR    +   +S  SDRVWSLG R
Sbjct:  581 RRGSSTDASDDASFVAPSRMQEPSLWSTAAEQAELERRMTEEF-DGSGVPEPVAPVYRAAAAAAVNIHPLAKTFEGLVPVSLDAPPPRPKRKGKQVSKSHLSKVQEQRITEEDLAFDGMEPDCSAII-GFGSSTAGRMWPH--EELEWYGGRKMFAELDRSSTASDRVWSLGRR 750
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BLAST of mRNA_F-serratus_M_contig869.20046.1 vs. uniprot
Match: A0A6H5L2I0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2I0_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 1.690e-39
Identity = 93/163 (57.06%), Postives = 108/163 (66.26%), Query Frame = 3 
Query:   45 FVTPSRLQEASLCSTAVEQAALEQRMREEFHE--GSAHQEPTDPVRRASATSVVNVPPKAITYEGLVPVSLDAPPPRQRRTGKQVSKAHLSKVEERRITEDDLAYADMEPRPRGFLAGGGPGGFGRALSQGSEELEWFGGRPTAIDFGDASMTSDRVWSLGLR 527
            FV PSR+QE SL STA EQ  LE+RM E  HE  G A  EP  P  RA+A + VN+ P A T+EGLVPVSLDAPPPR  R GKQVSK HLSKV+E+RITE+DLA+  MEP     + G G    GR      EELEW+GGR  + +   +S  SDRVWSLG R
Sbjct:  564 FVAPSRMQEPSLWSTAAEQVELERRMTEATHEFDGGAVPEPAAPTYRAAAAAAVNIHPLAKTFEGLVPVSLDAPPPRPMRKGKQVSKRHLSKVQEQRITEEDLAFDGMEP-DCSVIMGFGSSTVGRMWPY--EELEWYGGRKMSAELDHSSTASDRVWSLGRR 723
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig869.20046.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJE2_ECTSI1.330e-4256.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2I0_9PHAE1.690e-3957.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig869contigF-serratus_M_contig869:76847..81683 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size804
Cds size414
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig869.20046.1prot_F-serratus_M_contig869.20046.1Fucus serratus malepolypeptideF-serratus_M_contig869 77118..81564 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932541.6882434-UTR-F-serratus_M_contig869:76846..771171622932541.6882434-UTR-F-serratus_M_contig869:76846..77117Fucus serratus maleUTRF-serratus_M_contig869 76847..77117 -
1690964357.3573856-UTR-F-serratus_M_contig869:76846..771171690964357.3573856-UTR-F-serratus_M_contig869:76846..77117Fucus serratus maleUTRF-serratus_M_contig869 76847..77117 -
1622932541.7996147-UTR-F-serratus_M_contig869:81564..816831622932541.7996147-UTR-F-serratus_M_contig869:81564..81683Fucus serratus maleUTRF-serratus_M_contig869 81565..81683 -
1690964357.412622-UTR-F-serratus_M_contig869:81564..816831690964357.412622-UTR-F-serratus_M_contig869:81564..81683Fucus serratus maleUTRF-serratus_M_contig869 81565..81683 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932541.7142959-CDS-F-serratus_M_contig869:77117..772311622932541.7142959-CDS-F-serratus_M_contig869:77117..77231Fucus serratus maleCDSF-serratus_M_contig869 77118..77231 -
1690964357.3690786-CDS-F-serratus_M_contig869:77117..772311690964357.3690786-CDS-F-serratus_M_contig869:77117..77231Fucus serratus maleCDSF-serratus_M_contig869 77118..77231 -
1622932541.7367523-CDS-F-serratus_M_contig869:77732..778611622932541.7367523-CDS-F-serratus_M_contig869:77732..77861Fucus serratus maleCDSF-serratus_M_contig869 77733..77861 -
1690964357.3803537-CDS-F-serratus_M_contig869:77732..778611690964357.3803537-CDS-F-serratus_M_contig869:77732..77861Fucus serratus maleCDSF-serratus_M_contig869 77733..77861 -
1622932541.7523108-CDS-F-serratus_M_contig869:80552..807141622932541.7523108-CDS-F-serratus_M_contig869:80552..80714Fucus serratus maleCDSF-serratus_M_contig869 80553..80714 -
1690964357.3923583-CDS-F-serratus_M_contig869:80552..807141690964357.3923583-CDS-F-serratus_M_contig869:80552..80714Fucus serratus maleCDSF-serratus_M_contig869 80553..80714 -
1622932541.7732391-CDS-F-serratus_M_contig869:81555..815641622932541.7732391-CDS-F-serratus_M_contig869:81555..81564Fucus serratus maleCDSF-serratus_M_contig869 81556..81564 -
1690964357.4022799-CDS-F-serratus_M_contig869:81555..815641690964357.4022799-CDS-F-serratus_M_contig869:81555..81564Fucus serratus maleCDSF-serratus_M_contig869 81556..81564 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig869.20046.1

>prot_F-serratus_M_contig869.20046.1 ID=prot_F-serratus_M_contig869.20046.1|Name=mRNA_F-serratus_M_contig869.20046.1|organism=Fucus serratus male|type=polypeptide|length=138bp
MREEFHEGSAHQEPTDPVRRASATSVVNVPPKAITYEGLVPVSLDAPPPR
QRRTGKQVSKAHLSKVEERRITEDDLAYADMEPRPRGFLAGGGPGGFGRA
LSQGSEELEWFGGRPTAIDFGDASMTSDRVWSLGLRW*
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mRNA from alignment at F-serratus_M_contig869:76847..81683-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig869.20046.1 ID=mRNA_F-serratus_M_contig869.20046.1|Name=mRNA_F-serratus_M_contig869.20046.1|organism=Fucus serratus male|type=mRNA|length=4837bp|location=Sequence derived from alignment at F-serratus_M_contig869:76847..81683- (Fucus serratus male)
GAAGGAGGCAGGGTAAGAGCCGCGAGGAGGTTCCCGGGGGGATCTTCGTG
ACGCCGTCGAGGCTTCAGGAGGCGTCGCTGTGCTCGACCGCCGTGGAGCA
GGCCGCCTTGGAGCAGCGCATGCGGGAGGTAGAGAAGGAAGAGAACCGCT
GTTTTTTGTCAAGATATTATATTGCCAAGTTACCAGGTATATTAATAGTT
TCTCTTTATAAAGTTTTAGAGTTTTGAAACACGGTTGGTTTGAGTTGTAC
CTTTTTGTTGTTGTTGTTGCAAGATACTCCTACTCCTCATACTCCTCATA
CCTACTTTTTTTTTTTTTTTTGTATGTATGGCTAGACGAGATTCGAGTTT
CGAGTTTCGTCGTCGTTTACCTTTCGAAAGTTGTTTAACCCTTTCAGAAC
TCGTGTGCAAGTTATATATTGATTTTTGTACAGAAAAAACGGACCGGGTG
CCAAAAGGGTTAAACAAAAATCTGAACGCGTCTAGAGCTTCTGAGCACCC
CCTAGCCAAGGGGGAAAAATGTCAAAACCTTTGTTTCGTCCCCAATCCAC
AGCGACATCATTTTCTCGTGGTTCATTTTTTTTTGGGGGGGGGGGGCGGG
GAGCAGAGGATAGTTGTCTGTTGAGCCTGTGCCTGCCGTAGTGTGTCATC
AATCTGTCCCGTCTGTTTCATCTTTATCAGGGAGGTTAACTCCGGCGTTG
CCGTAGAGCTTAAAGAAGACCCAAGGCGCCGTCAGACAACGAGCGGGAGG
CTATCTCGACAAGGCCCGCCGGCGTTAAACGTACGCGCGGCGCATCCTCC
TTCAACATCTAATCTACAATCTGTAATATGATATGACACACATTTGTGAG
CAATCGCGCACCAATCAGATAAGTCAAGTCTCTATGATCGACCGATAAGG
GGGACGATGCGTAATCCCCCCCCTCCCCTACACCCCATACAATCCTACCT
TCTCGAAACATCCCGGCAGGAGTTCCACGAGGGATCGGCCCACCAGGAAC
CGACCGATCCCGTCCGCAGGGCTTCGGCGACCTCGGTGGTGAACGTCCCT
CCCAAGGCGATCACCTACGAGGGGCTGGTGCCGGTATCTCTGGACGCACC
GCCTCCGAGACAGAGGCGCACGGGCAAGCAGGTGAGTTGTGACTCCAACG
CGCCCGTGCCGCGTGGGCGTGAGCGAGGCTAGAGCGGAGCGCCGGGAGTG
TAGTTGCTTGGATGCATTGCGCCGCGGTGGCACGAGCAAGCATAATAGCT
TGGCCGCGATGACGGCGGGATGTTACAGCGCAAGACCTTCTTTTGTCGGG
GAAGGGGGCGGGGGGTGGTGGAGGAATGCCTTGTTGTAACCGTCGTAGCC
GTGTCTTCTAACGCCGGGGTTATTTTTTTTTTGTCGGTGTTTCGGATACT
ACTTTTTGTTTTTGTTTTTTGGAGAGGTGAAAGAGGCGGCGGCGTCTCGC
TTGAGATTTGAAGGTTTGATTGCGTTTCGCGGGATCGCCCAGGGCATGGC
ATGCGCGTATGCTCTTGTCTGGCTTGTTTTCTCGCAATGGTTTCCACGTT
TGCAGGCTTTGTGGAGTACCATCATGTACAGATAGAGCGTTTCCGTCCCC
GTCTCCGTCCCCGTCCCCGCCCCCCCTCCGGGGACCCCCCCCCCCCCGCG
CCGTCCACTTTTCTATTGATTTTTCTCCATAACAGAGAGAGAGAGAGATG
TTGCCAAGGGCTACCCCATCGAATATTTCGGGCTCTAGTGCGCACCCTGC
GATCACGAGAAAAAACGAGGGAAGGGGGAAGGATTTATTTTCCTGGGGAG
GCGTTCACTGCGAGCATTATTATTACCTAATACGGTCATCGCCTTGCATT
CCCCAAACACCCCCTCTTCTCTCTCTCTCGCACAAAAACACACACACACA
CCGTCCGGTCAGCGTACAACCAAGTGTGCCACAATCTGCGTGTTATAATC
TTACGCAACACCAAGGGTGCTATAATCTAGTAATGGTAGAGCAAGCGCGC
GCTATATTCTATTATATTGGTCCAGTAAGCGCGCCATATTGTAACCTAAT
GGTGTAGGTTCTGGTGTTTCCTCGCATAGGCGGTGCGTGAAATGGCAATC
TCATGGTCCAGCAAGCGTGCTATATGGTGTGGAGGCTGGTGTTTCCTTAC
ATAGGTACATGGGCGGTGCGTGAAATGGCAATCTAATGGTATAGCAAGCG
TGCTTTTTATTTTTTATATTTATGGTCACCACATATAGCAAGAGTATGGA
TCAACCGGGTAAGGTTGCCAATCTTGCTCGTGGTCAGCTGAACGGGGAAA
ATGAATATTTCCCTGTCCGCGTTCGCGCCTGATAATTTGGCCTCGCGAGG
CAGGTTCGGCAGTCCCGTCCCGCGTCAGCCTGTTCATCTCCATATTCAGG
CTGAATCTGGTGCTTACTTAAGGGATTCCTATCGAGTTCCGCGGCGGCGT
CCATTTATTTATTTAAAACTGCCATACGCCATCGGGTCAGTCCCGAGCTT
ATCGAGTCACGCAATTGCATACCGATGGTTCACTGCCGAGAGTCCGCCGG
CACAGGGTCGGTAAACCTCAAGGCAGTTCCGAACGAGGACTGCCTTGACA
GGTCACTATGGACCAATTAATATGCACCTCTCTTTCCCACACTCACTAAC
TACTGTATTAGTATAACCTAATGGTGTGGGGAGGTTGGTGTCTCCGTACA
TAGGCGGTGCCTGAAATGGCGGGGCGACGCTATTGCTCTGCTGGTGTATG
GTGTATGTCGTATGGTGTATGGTGTATGGTGTATACGCCGGCGTTCGCCG
ATAATAGGATGTTGGTCTTCCTTGATGAGGGGTTGTCAAACCTTCTGTCT
CAAAGTTACAGAATTCGTCTCGAATCCCAGCCGAAGCATCGTCTAGAGCT
ATACACACACATACACACACACACACACGTAATAAGTATCATTGATCCCC
CCTCGGGAGGATCAATGCGAGTGGCATAGAATGACTAGGATGACAGGGCC
GGATTGCGTGATTATGTGCAATTTAATAAATACACACACACACACACAGT
ATGCCCGAACGTGATGATGACGGGAAGGACCAAGGAGAGGGCAGCCCAAA
GCAAGCGTGCTCGCGCTGGTTCGCTCGCCATAGTGGATTGTTTTCTCCGA
GCGGTTTTTGTTTGCCGATGCCATATTGTCGTTCTCTGTTTTTTTTTCTT
ACGTTTTTGTTGTATTATCTCTTTCATTTTTACTTTGAATCCCCGACAGC
CGCACGCATTTTTTTTTTTTTTTTTTTTTTATATGCCGCTTTTTCCGAGC
ATTTTGTACCATTACCGTTTTATTTTTGGATGGTGTTTTTTTTTTCCTTC
CGGATGGTGTTTTTTTTCTATGAATACCTTGTGACCACAGGTTGTATTTT
TTTATACCAGCTTATTGTATGTAACAATTCAATCAAACCCCCAAAAAAAC
ACACAACCTCGCAATAAGTATAGACTATTTGATCCCGTAACACTCCTTGG
TAGGACCAATCCGACTATCAATAGCATAGAATGACAGGGCCGGATCACTT
CGCGGTTGTGTGCAATTTAATAAATACAGCACACCCACGCACGTCCCCTT
TTGTCGCCTCTGATCAAAAGTTTTCGTAACAAGTATCACTGATGATTGAT
CCCTTAATAACAACACCCCTACCTTGGGAGGACCAATGCCAGTGGCATAG
AATGACTAGTAATAGGAAGACAGGGCCGGATTGAGCGGTTATGTGCTATT
TAATAAATACAGCACACACATGCATGCATACACACACACACACACACGCA
CGCTTTCCACACCCGCTTCTAGGTGAGCAAAGCGCACCTGTCCAAAGTGG
AAGAGCGACGCATCACGGAAGATGATCTCGCGTACGCCGACATGGAGCCC
CGGCCGCGCGGTTTTTTAGCAGGGGGCGGCCCTGGCGGCTTCGGCAGAGC
GGTGAGATGCTATAACACGATATAATATAATAGTACGTTTAGATGGTGTA
CCACTTGTAGTCTATACCAGAACAGGATAACTGACCCTGTTGCGCCGGGG
GGCTCTCTCGGCGGAGAACGCCACCGGTACGCAATCGCGCGGCATGATGA
ACTCGGGACTTGACCCGATGGTGTTTTTTTTGACGATGTAGATGGACACC
GTTCGCGGAAAGCGCAAAAAAGGAGAGGAGCCCGCGGGTAAGCACCAAAT
TCACCCTGGATGTTGAGAATAAGCGGCCTGACGCGGGACGGGACACGGCC
GCACCTGTCTCGCGAGATCAAATTCTCAGGCGCGGACGGGCACAGAGGAA
AACATTTTTTTTTCCCGTTACAGCTGACCCACGAGCAGGATTGACAACCA
TAGTCTATAAACGGTTGGAGCCAACTGAAACCTTCTAAAAGTGACGATGC
CGACCTTAATCCCCCTTTCCCCCTCCTGTTAATTCTGTTAATTCTTTGCC
AGCTGTCGCAAGGCTCGGAGGAGTTGGAGTGGTTTGGAGGCCGTCCTACC
GCGATCGATTTCGGAGACGCGTCGATGACTTCCGATCGCGTCTGGTCACT
TGGGCTGAGATGGTGATCGCTTTGTAAGCGACGCACGGCCCTCGCAACGA
GTAGGCTTTACACGTAAGGTTCAAGTGTTTGAATGAAATCATTTCGATTT
CAGTCTCGCCCTTGAGTGGAAAAACATTTTTTGTTGTTGTCTTTTGTTAT
TTGTTGTTGTAAAAGATAGCGCTACCGACTGTCCGAGAGGTGCGATCATA
AACCTGCCATCGATGAATGTGTGGTATTAATCAGGACAGTAGTCGAGGTT
GTTTGACGCATCGGGGGGAGAGGGAGAGGGGAATGGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig869:76847..81683-

>mRNA_F-serratus_M_contig869.20046.1 ID=mRNA_F-serratus_M_contig869.20046.1|Name=mRNA_F-serratus_M_contig869.20046.1|organism=Fucus serratus male|type=CDS|length=828bp|location=Sequence derived from alignment at F-serratus_M_contig869:76847..81683- (Fucus serratus male)
ATGCGGGAGATGCGGGAGGAGTTCCACGAGGGATCGGCCCACCAGGAACC
GACCGATCCCGTCCGCAGGGCTTCGGCGACCTCGGTGGTGAACGTCCCTC
CCAAGGCGATCACCTACGAGGGGCTGGTGCCGGTATCTCTGGACGCACCG
CCTCCGAGACAGAGGCGCACGGGCAAGCAGGAGTTCCACGAGGGATCGGC
CCACCAGGAACCGACCGATCCCGTCCGCAGGGCTTCGGCGACCTCGGTGG
TGAACGTCCCTCCCAAGGCGATCACCTACGAGGGGCTGGTGCCGGTATCT
CTGGACGCACCGCCTCCGAGACAGAGGCGCACGGGCAAGCAGGTGAGCAA
AGCGCACCTGTCCAAAGTGGAAGAGCGACGCATCACGGAAGATGATCTCG
CGTACGCCGACATGGAGCCCCGGCCGCGCGGTTTTTTAGCAGGGGGCGGC
CCTGGCGGCTTCGGCAGAGCGGTGAGCAAAGCGCACCTGTCCAAAGTGGA
AGAGCGACGCATCACGGAAGATGATCTCGCGTACGCCGACATGGAGCCCC
GGCCGCGCGGTTTTTTAGCAGGGGGCGGCCCTGGCGGCTTCGGCAGAGCG
CTGTCGCAAGGCTCGGAGGAGTTGGAGTGGTTTGGAGGCCGTCCTACCGC
GATCGATTTCGGAGACGCGTCGATGACTTCCGATCGCGTCTGGTCACTTG
GGCTGAGATGGTGACTGTCGCAAGGCTCGGAGGAGTTGGAGTGGTTTGGA
GGCCGTCCTACCGCGATCGATTTCGGAGACGCGTCGATGACTTCCGATCG
CGTCTGGTCACTTGGGCTGAGATGGTGA
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