mRNA_F-serratus_M_contig869.20044.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig869.20044.1
Unique NamemRNA_F-serratus_M_contig869.20044.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig869.20044.1 vs. uniprot
Match: A0A6H5L5C3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5C3_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 9.610e-38
Identity = 75/88 (85.23%), Postives = 81/88 (92.05%), Query Frame = 1 
Query:    1 LCRRFVQLFLVGSDVVSVGEAAEKLSDPVDVALGTVMFKTRARRLYDIANALAALGLVEKVHSRADSNKPNFRWIGIPVRELPLLDPA 264
            LCRRFVQLFLVG+DVVSVGEAAEKLSDP DVA  TV+FKTRARRLYDIANALAALGLV+KV S+ DS KPNFRWIG+PVR LPLLDP+
Sbjct:  576 LCRRFVQLFLVGNDVVSVGEAAEKLSDPSDVAGSTVVFKTRARRLYDIANALAALGLVDKVRSK-DSCKPNFRWIGVPVRTLPLLDPS 662
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BLAST of mRNA_F-serratus_M_contig869.20044.1 vs. uniprot
Match: D8LJE0_ECTSI (Putative Del transcription factor (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJE0_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 6.840e-26
Identity = 58/71 (81.69%), Postives = 64/71 (90.14%), Query Frame = 1 
Query:    1 LCRRFVQLFLVGSDVVSVGEAAEKLSDPVDVALGTVMFKTRARRLYDIANALAALGLVEKVHSRADSNKPN 213
            LCRRFVQLFLVG+DVVSVGEAAEKLS+P DVA  TV+FKTRARRLYDIANALAALGLV+KV S+  S+K N
Sbjct:  563 LCRRFVQLFLVGNDVVSVGEAAEKLSEPSDVAGSTVVFKTRARRLYDIANALAALGLVDKVRSKDSSSKGN 633
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BLAST of mRNA_F-serratus_M_contig869.20044.1 vs. uniprot
Match: A0A7S0SC13_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SC13_9CHLO)

HSP 1 Score: 72.0 bits (175), Expect = 1.200e-13
Identity = 49/107 (45.79%), Postives = 65/107 (60.75%), Query Frame = 1 
Query:    1 LCRRFVQLFLVG-SDVVSVGEAAEKLSDPVDVALGTVMFKTRARRLYDIANALAALGLVEKVHSRADSNKPNFRWIGIPVRELPLLDPASFNADSIARAAAGLDLSP 318
            L ++FVQLFLV  + VVS+  AA  L    +        KT+ RRLYDIAN L++L L+EK H  ADS KP FRW+G+   E  L   A+ NA ++A +AA L+  P
Sbjct:   13 LSQKFVQLFLVSRARVVSLESAARTLLGSCE---DQAKLKTKVRRLYDIANILSSLRLIEKTHL-ADSRKPAFRWLGV---EKELAAAAAVNATALATSAATLERQP 112
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BLAST of mRNA_F-serratus_M_contig869.20044.1 vs. uniprot
Match: A0A067G2W9_CITSI (E2F_TDP domain-containing protein n=1 Tax=Citrus sinensis TaxID=2711 RepID=A0A067G2W9_CITSI)

HSP 1 Score: 68.2 bits (165), Expect = 6.420e-11
Identity = 41/105 (39.05%), Postives = 65/105 (61.90%), Query Frame = 1 
Query:    1 LCRRFVQLFLVGS-DVVSVGEAAEKLSDPVDVALGTVMFKTRARRLYDIANALAALGLVEKVHSRADSNKPNFRWIGIPVRELPLLDPASFNADSIARAAAGLDL 312
            L + FV+LF+  + D++++ E A+ L   +  A  T + +T+ RRLYDIAN L+++ L+EK H+ AD+ KP FRW+G+   E+ L D  S N D   +   G D+
Sbjct:   82 LTQNFVRLFVCSNVDMITLDEVAKLL---LGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTHT-ADTRKPAFRWLGVNRLEIGLAD--SLNLDESRKRTFGTDV 180
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BLAST of mRNA_F-serratus_M_contig869.20044.1 vs. uniprot
Match: A0A8K0GUP4_9ROSA (Uncharacterized protein n=1 Tax=Rhamnella rubrinervis TaxID=2594499 RepID=A0A8K0GUP4_9ROSA)

HSP 1 Score: 67.4 bits (163), Expect = 1.630e-10
Identity = 37/78 (47.44%), Postives = 55/78 (70.51%), Query Frame = 1 
Query:    1 LCRRFVQLFLVGS-DVVSVGEAAEKLSDPVDVALGTVMFKTRARRLYDIANALAALGLVEKVHSRADSNKPNFRWIGI 231
            L + FV+LF+  S DV+S+ EAA+ L   +  A  + + +T+ RRLYDIAN L+++ L+EK H+ ADS KP FRW+G+
Sbjct:  154 LTQNFVKLFVCSSVDVISLDEAAKLL---LGDAHNSSIMRTKVRRLYDIANVLSSMNLIEKTHT-ADSRKPAFRWLGL 227
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BLAST of mRNA_F-serratus_M_contig869.20044.1 vs. uniprot
Match: A0A7S1B9K5_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B9K5_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.710e-10
Identity = 36/84 (42.86%), Postives = 57/84 (67.86%), Query Frame = 1 
Query:    1 LCRRFVQLFLVGSDVVSVGEAAEK-LSDPVDVALGTVMFKTRARRLYDIANALAALGLVEKVHSRADSNKPNFRWIGIPVRELP 249
            L ++F+Q+FLVG++V+S+ EA+EK L  P +        KT+ RRLYDIAN + ++G+++KV   +   KP+F+W  IP  +LP
Sbjct:  147 LSQKFIQMFLVGNNVLSLAEASEKILGCPSNSRNEEKGMKTKVRRLYDIANVMVSIGIIQKV-ILSRFKKPSFKWDFIPPPKLP 229
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BLAST of mRNA_F-serratus_M_contig869.20044.1 vs. uniprot
Match: A0A7S3KPA1_EUPCR (Hypothetical protein (Fragment) n=1 Tax=Euplotes crassus TaxID=5936 RepID=A0A7S3KPA1_EUPCR)

HSP 1 Score: 64.3 bits (155), Expect = 2.770e-10
Identity = 32/76 (42.11%), Postives = 48/76 (63.16%), Query Frame = 1 
Query:    1 LCRRFVQLFLVGSDVVSVGEAAEKLSDPVDVALGTVMFKTRARRLYDIANALAALGLVEKVHSRADSNKPNFRWIG 228
            LC  F++ FL   + +S+ +AA ++SD     +     KT+ RRLYDIAN LAAL L+EK  +  ++ KP F+W+G
Sbjct:    6 LCESFIKQFLTWRETISLDQAARRISDD---QIDESKLKTKVRRLYDIANVLAALNLIEK--TSLETRKPAFKWVG 76
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BLAST of mRNA_F-serratus_M_contig869.20044.1 vs. uniprot
Match: A0A1Q3D535_CEPFO (E2F_TDP domain-containing protein n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3D535_CEPFO)

HSP 1 Score: 66.6 bits (161), Expect = 3.190e-10
Identity = 36/78 (46.15%), Postives = 55/78 (70.51%), Query Frame = 1 
Query:    1 LCRRFVQLFLVGS-DVVSVGEAAEKLSDPVDVALGTVMFKTRARRLYDIANALAALGLVEKVHSRADSNKPNFRWIGI 231
            L + FV+LFL  + D++S+ EAA+ L   +  A  + + +T+ RRLYDIAN L++L L+EK H+R D+ KP FRW+G+
Sbjct:  164 LTQNFVKLFLCSNADLISLDEAAKLL---LGDAHSSSIMRTKVRRLYDIANVLSSLSLIEKTHAR-DTRKPAFRWLGV 237
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BLAST of mRNA_F-serratus_M_contig869.20044.1 vs. uniprot
Match: UPI00106C44E3 (LOW QUALITY PROTEIN: transcription factor E2F8-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106C44E3)

HSP 1 Score: 66.6 bits (161), Expect = 3.830e-10
Identity = 38/85 (44.71%), Postives = 55/85 (64.71%), Query Frame = 1 
Query:    1 LCRRFVQLFLVGSD-VVSVGEAAEKLSDPVDVALGTVMFKTRARRLYDIANALAALGLVEKVHSR-ADSNKPNFRWIGIPVRELP 249
            L ++F+ +FL+    VV++ +AA  L +  D     V +KT+ RRLYDIAN L++L L+EKVH R A   KP F+WIG+ +  LP
Sbjct:  334 LSQKFLLMFLLSKGGVVTLEDAATVLLEEHDER--NVKYKTKVRRLYDIANILSSLELIEKVHIRGAVGKKPGFKWIGVDIESLP 416
[Close]
BLAST of mRNA_F-serratus_M_contig869.20044.1 vs. uniprot
Match: B9R8Z0_RICCO (E2F, putative n=1 Tax=Ricinus communis TaxID=3988 RepID=B9R8Z0_RICCO)

HSP 1 Score: 66.2 bits (160), Expect = 4.380e-10
Identity = 37/81 (45.68%), Postives = 57/81 (70.37%), Query Frame = 1 
Query:    1 LCRRFVQLFLVG-SDVVSVGEAAEKLSDPVDVALGTVMFKTRARRLYDIANALAALGLVEKVHSRADSNKPNFRWIGIPVR 240
            L + FV+LFL   +D++S+ EAA+ L   +  A  + + +T+ RRLYDIAN L++L L+EK H+ A+S KP FRW+G+ V+
Sbjct:  168 LTQNFVKLFLCSKADLISLDEAAKLL---LGDAHNSSIMRTKVRRLYDIANVLSSLKLIEKTHT-AESRKPAFRWLGLRVK 244
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig869.20044.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5C3_9PHAE9.610e-3885.23Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D8LJE0_ECTSI6.840e-2681.69Putative Del transcription factor (Partial) (Fragm... [more]
A0A7S0SC13_9CHLO1.200e-1345.79Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
A0A067G2W9_CITSI6.420e-1139.05E2F_TDP domain-containing protein n=1 Tax=Citrus s... [more]
A0A8K0GUP4_9ROSA1.630e-1047.44Uncharacterized protein n=1 Tax=Rhamnella rubriner... [more]
A0A7S1B9K5_9STRA1.710e-1042.86Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S3KPA1_EUPCR2.770e-1042.11Hypothetical protein (Fragment) n=1 Tax=Euplotes c... [more]
A0A1Q3D535_CEPFO3.190e-1046.15E2F_TDP domain-containing protein n=1 Tax=Cephalot... [more]
UPI00106C44E33.830e-1044.71LOW QUALITY PROTEIN: transcription factor E2F8-lik... [more]
B9R8Z0_RICCO4.380e-1045.68E2F, putative n=1 Tax=Ricinus communis TaxID=3988 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig869contigF-serratus_M_contig869:49176..51136 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.3
Seed ortholog evalue3.5e-22
Seed eggNOG ortholog2880.D8LJE0
KEGG koko:K09391
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.chorionic trophoblast cell differentiation
EggNOG OGsKOG2577@1,KOG2578@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Exons3
Model size409
Cds size405
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig869.20044.1prot_F-serratus_M_contig869.20044.1Fucus serratus malepolypeptideF-serratus_M_contig869 49178..51136 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932541.1006992-CDS-F-serratus_M_contig869:49177..494021622932541.1006992-CDS-F-serratus_M_contig869:49177..49402Fucus serratus maleCDSF-serratus_M_contig869 49178..49402 -
1690964357.094555-CDS-F-serratus_M_contig869:49177..494021690964357.094555-CDS-F-serratus_M_contig869:49177..49402Fucus serratus maleCDSF-serratus_M_contig869 49178..49402 -
1622932541.117802-CDS-F-serratus_M_contig869:50559..506491622932541.117802-CDS-F-serratus_M_contig869:50559..50649Fucus serratus maleCDSF-serratus_M_contig869 50560..50649 -
1690964357.1050367-CDS-F-serratus_M_contig869:50559..506491690964357.1050367-CDS-F-serratus_M_contig869:50559..50649Fucus serratus maleCDSF-serratus_M_contig869 50560..50649 -
1622932541.146733-CDS-F-serratus_M_contig869:51046..511361622932541.146733-CDS-F-serratus_M_contig869:51046..51136Fucus serratus maleCDSF-serratus_M_contig869 51047..51136 -
1690964357.1139097-CDS-F-serratus_M_contig869:51046..511361690964357.1139097-CDS-F-serratus_M_contig869:51046..51136Fucus serratus maleCDSF-serratus_M_contig869 51047..51136 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig869.20044.1

>prot_F-serratus_M_contig869.20044.1 ID=prot_F-serratus_M_contig869.20044.1|Name=mRNA_F-serratus_M_contig869.20044.1|organism=Fucus serratus male|type=polypeptide|length=135bp
LCRRFVQLFLVGSDVVSVGEAAEKLSDPVDVALGTVMFKTRARRLYDIAN
ALAALGLVEKVHSRADSNKPNFRWIGIPVRELPLLDPASFNADSIARAAA
GLDLSPSPSSSLPLEALGSPLRAVSQQSIARREAT
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mRNA from alignment at F-serratus_M_contig869:49176..51136-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig869.20044.1 ID=mRNA_F-serratus_M_contig869.20044.1|Name=mRNA_F-serratus_M_contig869.20044.1|organism=Fucus serratus male|type=mRNA|length=1961bp|location=Sequence derived from alignment at F-serratus_M_contig869:49176..51136- (Fucus serratus male)
CTCTGCCGGCGCTTCGTGCAGCTTTTTTTGGTGGGGAGCGACGTCGTCAG
CGTCGGAGAGGCGGCCGAAAAGCTCTCAGATCCCGTGGACGTGAGTGATT
TCTCAAAAAGATCTCAGAGAGCCCATCGCTACAAGTAAAAAAAAAAAGGA
AGTCGTTACAGGAACCTGACAAGACATTTCTCATGAGATCCCATTTTTTT
TTTCTTGCCTCAGAAAGGCTTGGGGGGAAAAGAGCCGTGTTTCGAATACG
CTTTTTTTTGCTTGTGCTCCCCTTGTTTTTGTATTGAATACTGGTACCTG
TGTTTGCAAAATAATGATAATCGAGGCGCTCCAGAAAGAGACACACGTTG
CGGACGCGGTGTTTTTTTTTGTTCTTTTTTTTTGTTCTTCCTGTTTTTCG
TTTCTCCCACCCCTTTTCCTCTCCCTCTTTTCACTCCTTTTTTCGACATC
AATGTTGTTAAAAAATGAAAAAAAATAAAAACCCCAGGTGGCGCTAGGCA
CCGTGATGTTCAAAACCAGGGCGAGAAGGTTATACGACATCGCGAATGCT
CTGGCCGCGCTTGGCCTCGTCGAGAAGGTCCGTACTGTACAAGGTGTACT
TGCAGCACAGGGCACATTGTTGTCTATAAAATACATACATGCATCACACT
AAATACTGTCTCGAGAAGGTGGGGAGGGGGCGGGGGGGGGAGGGGACGAC
TTGGAGCTGTTGCCATCAAACCTACAGTATATTCCAGTCTAGTCTTTGTT
TTTGTTTTTTGATTGTTTGAAAAAAACTAAAAAAAAACCCTGGGTGATGC
CACCAATCCCCCGCTTCGTGTCCCGGGGGGGGGGGCACTCTTCGCAACAT
TTTGTGTTGGGAAGAGAGTGGAGACAGAGACGGATGGATGGATTGAAGGA
AGGGCGGGAGTTATCGGAAAGAGGTGGGGGGTGGGGGTTGGGGGTTACTT
TTTACACTCCTTTTCCATTGTCATAGTCGGTTTTGCCTGTTATCCTTGCC
GACGTGAGATTTGTGACAGCATCGGAAGGATCCCCTAGAGAGACCCATGC
ACCGCTTCGACTATTAGTACTATAATATTAGTATTATAAATACTATAAAT
ACTATTCACACCATTAATGCTGACTATTAGTACTGCAGTCTCCCGTGTGG
AGCAGAGTGGTAACATATAACCTCGCAGATCACTTTTAAGAGCGTGGGGG
TCGTGGGTTCGATTCTTGACAAGATCATGATTCTTGTTTCTGGCTTCCGT
TGAAGCATTGTAATTTGATTGGTTGACGAGGTGTAAAGAGTGCTGAACTA
TTTGCATCGCGGTTAAAAAATCGTAAGGCGAGAACCAGGGATAGGTGAGA
AGATCCTTCGTGACCACAGGCATTAACAGGATGGATGATGGTAACGTTGT
AGTGGGTGGGATTGGTAACCTCTAGTAGCACGTTGAGGCCCATCGGCCAT
ACTAATAGTAAGTGAGATACATACATTTTTTTCCCCACCCTAACCTCTTC
CCTTTGCTTCCACTCGCCCCTCGTGGCGCCCAATCTCTCGCCCTTGCTTC
CATCAACCTTTGACCATCGCTCAGCCTCTGCCCGCGCCACGCACACGATA
CCAAAGGGTTTTCCACTCAGGCGTCGGCGAAGAGGGGCCGGGTGGTTGCG
CGCGTAACCCTCCCACCCTGTTCCATGATTCTCCTTTTTATGACGATGCC
TATGATGGCCCGTGATACTTCCTCACATGAACAGGTACACTCTAGAGCAG
ACTCCAACAAGCCCAACTTCCGCTGGATCGGGATCCCCGTGAGGGAACTG
CCTCTTCTCGATCCCGCGAGCTTCAATGCGGACTCCATCGCGCGGGCGGC
TGCGGGCCTCGATCTCTCTCCCTCTCCCTCGTCCTCCTTGCCTCTCGAGG
CTCTGGGAAGCCCTCTCCGGGCAGTGTCCCAGCAGAGCATCGCTCGGCGA
GAAGCGACCGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig869:49176..51136-

>mRNA_F-serratus_M_contig869.20044.1 ID=mRNA_F-serratus_M_contig869.20044.1|Name=mRNA_F-serratus_M_contig869.20044.1|organism=Fucus serratus male|type=CDS|length=810bp|location=Sequence derived from alignment at F-serratus_M_contig869:49176..51136- (Fucus serratus male)
CTCTGCCGGCGCTTCGTGCAGCTTTTTTTGGTGGGGAGCGACGTCGTCAG
CGTCGGAGAGGCGGCCGAAAAGCTCTCAGATCCCGTGGACCTCTGCCGGC
GCTTCGTGCAGCTTTTTTTGGTGGGGAGCGACGTCGTCAGCGTCGGAGAG
GCGGCCGAAAAGCTCTCAGATCCCGTGGACGTGGCGCTAGGCACCGTGAT
GTTCAAAACCAGGGCGAGAAGGTTATACGACATCGCGAATGCTCTGGCCG
CGCTTGGCCTCGTCGAGAAGGTGGCGCTAGGCACCGTGATGTTCAAAACC
AGGGCGAGAAGGTTATACGACATCGCGAATGCTCTGGCCGCGCTTGGCCT
CGTCGAGAAGGTACACTCTAGAGCAGACTCCAACAAGCCCAACTTCCGCT
GGATCGGGATCCCCGTGAGGGAACTGCCTCTTCTCGATCCCGCGAGCTTC
AATGCGGACTCCATCGCGCGGGCGGCTGCGGGCCTCGATCTCTCTCCCTC
TCCCTCGTCCTCCTTGCCTCTCGAGGCTCTGGGAAGCCCTCTCCGGGCAG
TGTCCCAGCAGAGCATCGCTCGGCGAGAAGCGACCGTACACTCTAGAGCA
GACTCCAACAAGCCCAACTTCCGCTGGATCGGGATCCCCGTGAGGGAACT
GCCTCTTCTCGATCCCGCGAGCTTCAATGCGGACTCCATCGCGCGGGCGG
CTGCGGGCCTCGATCTCTCTCCCTCTCCCTCGTCCTCCTTGCCTCTCGAG
GCTCTGGGAAGCCCTCTCCGGGCAGTGTCCCAGCAGAGCATCGCTCGGCG
AGAAGCGACC
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