mRNA_F-serratus_M_contig8686.20041.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig8686.20041.1
Unique NamemRNA_F-serratus_M_contig8686.20041.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig8686.20041.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig8686contigF-serratus_M_contig8686:1937..2693 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size201
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932540.9061275-CDS-F-serratus_M_contig8686:1936..19671622932540.9061275-CDS-F-serratus_M_contig8686:1936..1967Fucus serratus maleCDSF-serratus_M_contig8686 1937..1967 +
1690964357.0392852-CDS-F-serratus_M_contig8686:1936..19671690964357.0392852-CDS-F-serratus_M_contig8686:1936..1967Fucus serratus maleCDSF-serratus_M_contig8686 1937..1967 +
1622932540.9297578-CDS-F-serratus_M_contig8686:2524..26911622932540.9297578-CDS-F-serratus_M_contig8686:2524..2691Fucus serratus maleCDSF-serratus_M_contig8686 2525..2691 +
1690964357.052289-CDS-F-serratus_M_contig8686:2524..26911690964357.052289-CDS-F-serratus_M_contig8686:2524..2691Fucus serratus maleCDSF-serratus_M_contig8686 2525..2691 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig8686.20041.1prot_F-serratus_M_contig8686.20041.1Fucus serratus malepolypeptideF-serratus_M_contig8686 1937..2691 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig8686.20041.1

>prot_F-serratus_M_contig8686.20041.1 ID=prot_F-serratus_M_contig8686.20041.1|Name=mRNA_F-serratus_M_contig8686.20041.1|organism=Fucus serratus male|type=polypeptide|length=66bp
AVVPSSTASTGFSFGTGSTAAASTSSAAPVAPAPGPTSMNFTSSSGGLSF
GFGAAPATATTTAASN
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mRNA from alignment at F-serratus_M_contig8686:1937..2693+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig8686.20041.1 ID=mRNA_F-serratus_M_contig8686.20041.1|Name=mRNA_F-serratus_M_contig8686.20041.1|organism=Fucus serratus male|type=mRNA|length=757bp|location=Sequence derived from alignment at F-serratus_M_contig8686:1937..2693+ (Fucus serratus male)
GCGGTCGTGCCTTCGTCGACAGCATCGACAGGCGAGGAAGCGTTGTTTCG
ATCTAAAACCGGGTGGATATTTCGCCGGGGGGGGGGGGGTGTTCGGTTCC
GCGGGTTGTTTTTGTTTTTGTCAGTATGGCTCGACCGTGGAGGTGCAGGC
ATTCAAATACACTTGCACTTTTTTTTGTAGGATTGCTTGCCTGCGAGATT
ACTTTCATTGCCATGAAGCGTTGTCATATTTTGAAACCCGTCTGTTTGAA
AGAAAATCTGCAACCCTCCCCCACGAAAAAATCTTGAATTTTGATAATAA
TAGACATCGCACACCCGTATTTGTTAAAAAAAAATCACCCACTTTGGTCC
AAATAGAGTAGTCTCAATTCATTTGAAACTGTTAGAGCCATTTTTGGTAT
GGTTTGAGTTAGCAGTTAGCGTTAGCTTTGCGTCAGATCCACCATGCAGG
GATCTGTTCATATACAATCACCAGGTGGTGTGATCAAGTCGCCTACTCTC
ACAATACAAGCTTCCACGACCCTACCACCCCCCCTACCCCCGTTCTCCTT
GCCCTCTCTCCATTCTCTCCCCCCGCCCTGGTTTGCAGGATTCTCGTTCG
GCACTGGCTCAACCGCAGCCGCATCCACGAGCAGCGCCGCCCCAGTCGCG
CCTGCCCCGGGACCGACGTCGATGAACTTCACTTCCTCGTCCGGTGGCCT
TAGCTTCGGATTCGGCGCGGCGCCTGCCACTGCTACGACGACCGCGGCGT
CAAACTC
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Coding sequence (CDS) from alignment at F-serratus_M_contig8686:1937..2693+

>mRNA_F-serratus_M_contig8686.20041.1 ID=mRNA_F-serratus_M_contig8686.20041.1|Name=mRNA_F-serratus_M_contig8686.20041.1|organism=Fucus serratus male|type=CDS|length=396bp|location=Sequence derived from alignment at F-serratus_M_contig8686:1937..2693+ (Fucus serratus male)
GCGGTCGTGCCTTCGTCGACAGCATCGACAGGCGGTCGTGCCTTCGTCGA
CAGCATCGACAGGATTCTCGTTCGGCACTGGCTCAACCGCAGCCGCATCC
ACGAGCAGCGCCGCCCCAGTCGCGCCTGCCCCGGGACCGACGTCGATGAA
CTTCACTTCCTCGTCCGGTGGCCTTAGCTTCGGATTCGGCGCGGCGCCTG
CCACTGCTACGACGACCGCGGCGTCAAACGATTCTCGTTCGGCACTGGCT
CAACCGCAGCCGCATCCACGAGCAGCGCCGCCCCAGTCGCGCCTGCCCCG
GGACCGACGTCGATGAACTTCACTTCCTCGTCCGGTGGCCTTAGCTTCGG
ATTCGGCGCGGCGCCTGCCACTGCTACGACGACCGCGGCGTCAAAC
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