mRNA_F-serratus_M_contig868.20038.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig868.20038.1 vs. uniprot
Match: D7G9B1_ECTSI (RING-CH-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9B1_ECTSI) HSP 1 Score: 711 bits (1835), Expect = 1.370e-221 Identity = 567/1394 (40.67%), Postives = 658/1394 (47.20%), Query Frame = 1
Query: 160 DPDEGPECRVCRGGDEGGTRPLVHPCRCSGSIKYVHQDCLMEWLRSRQGGSNAAAAXXXXXXXXXXXXXAGPNRDAIALQAQRCELCRERLVFKARYRPGAPAQLGLSQFLRGATRRATPRLMDAFRGTLNMLMWGVAVPVLYCAMFRMGLGVALLFAQEFAAFARGENAATAPEFLEAIDASTAGVQTNSLPGIERIWWWTWMDLLGDWCGGVTLMIGVMCLGPPCVELAVEFVAMLKLVPIWLEYWWLGED-----APAPRGQNGGAGDPPREGRPRGIPAXXXXXXXXXNPPMVRIFGLFAYPTDDMHIIQTVFISYRRXXXXXXXXXXXXXXXXXXGGALRSWFLN----STFDITPLNTGMSQRREQRYANTCAGKRSAHHYVRLAFPPSPPLREGAMGRVDQDPAIPPRNAL-VMDGNPARXXXXXXXNPPPAAGEPNHVNAA--------AVDAAFGPAQGNVREQDGE-----IAPPGRDGG--------GHGEAEPVRPPHGHPRDG----VLGALDRVEWMLMGVLEQLAAPPREEDVDGEALFLWGWPAVGTAGGFLAFMGLLVLFAQTLPFATYHAVSGAVRL--PMPSATPRGPSRGAST-------------------------PPPGASGPQPLPAELFSWNSVVRPSPSAAIAFSYTSLEAKAHAFGLESLGYSTKWGSFGEGGVSDTGFSVGRNRTAALRLLSSDPGLGTVAVGTTTVVIGSGLPLTTATASAAGGEMGIFFSRPLSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNHDGYGVGKIIFPPVEDPAGSSLGRLVQPGDRWESLGWWLAERRRAPERGSDGGSAPTWKKRPWMPGRRAVRRFPAQEEAL--YGGGGWGGRTSPGSRRAEAFQRSKPVDADQQQARPSSGGPPSKTNNTGRSTVTTADGSPRKSPPSQGAPIEASGGKNKRSSSSRDGSKWWSTTVSFLRGPIIPGTADLRVGEVFCETIKGHGLLGTILILLCLAFSVARLR----SAHNRHGLRGTPRDGLPAGAAADGGVGVNN----GQGGIVPNGREGEPAGFRVEEAVGVG--GMWMGRGXXXXXXXXXXAGGG-----------------------------MLERDGQIGIDLKVMTIGVLELLILPLWVGINADIFSLPLLASTLEARVAWAATNPLSSLALHWGAGSMATGVVSCLAREIVRALKPNLLPTWALRPPEQGLEEASMLVRMTHDAFLTQLRGFLISVVAYPAALALMVMVPINFRAFFGKTWPRWLGGRLLQG--VEPVVLGIGEPTQGDRLGMDLVLFHFILPVVMEHLKIRGPVRRAVCWVLTIGCGVTGTRGVLLHPALAMGRGAEPNDPDDLDDLELPHP 4026
D +E PECRVCRG DEGG RPLVHPCRC GSIKYVHQDCL+EWLRSR GG XXXXXXXXX G DA ALQAQRCELCRE+LVFKARYRPGAPA+LG+ QF+RGA RRATPRL+DAFRG LNM MWG+A+PVLYC +FR+G+G++LL AQEF+A G A A+ GV SLPG+ER+ W +WMD+LGDWCGGV LMIGVMCLGPPCVELA+EFV ++K +P+ LE WWLG++ A PR + DPP + I GG + + G G A P PP R G +D +P + R +DGN XXXXXXX AV A G GN Q GE PP DGG G A ++ +G VLG L RVEW L GVLEQLAAPPR+EDVDGEALFLWGWPAVG AG FLAFM LL+LFAQT+P+AT+H SGAV P+P R S + P G P PL W+SV RPSP+A AAL +L+ P + T G P +SS S GRL R S W A G G+ P+ P Q+ + G RR E R +G A GG R +W++ T+ FLRGP+IPGT+ LR G V +T++GH +L L+LL +SV RLR + H G+ +G A GG GV G G PN G G AV V G RG GG MLERDGQ+G+DLKV+T+G+LELL+LPLWVG+ AD+FSLPLLASTLEAR AWA NP SSLALHWGAGSMA GVVSCL REI RALKP+LLP WA RP EQGLEE +LVRMT++ FL QLR FL+SVVAYPAALALMVMVP + + F PR L R L + P+VLGIGEPTQGDRLGMDLV+ HFILPVVMEHLKIRGPVRRA CWVL+ CG TGTRG+LLHPAL GRGA NDPDDLDDLELP P
Sbjct: 49 DSEEEPECRVCRGDDEGGARPLVHPCRCRGSIKYVHQDCLVEWLRSRGGGXXXXXXXXXXXXXXX-----GVPDDASALQAQRCELCREKLVFKARYRPGAPAKLGIYQFVRGAVRRATPRLLDAFRGALNMQMWGLAIPVLYCLLFRLGIGLSLLLAQEFSAIFLG---AGGXXXXXAVAGGGRGV---SLPGLERVGWGSWMDILGDWCGGVGLMIGVMCLGPPCVELALEFVNLVKALPVVLERWWLGDEDELRVAGGPRNEQ----DPPDD-----ILVEVMLDRVRDRALHAAAAAHDXXXXXXXXXXXXXXXXXXATLPLPAGRAAAVPPIGEEGGEXXXXXXXXGEVEASGVPSVGGGGGD----------VGDYDGRAVAAAAEVPIPPER----GVMDGEPPVVGRGTGGPVDGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDNAVPAGVG---GNGAPQAGEHGVGVAVPPVGDGGEGRVLAVGGXXVAAGIQGXXXXEGEGGVHVVLGLLGRVEWFLAGVLEQLAAPPRDEDVDGEALFLWGWPAVGAAGSFLAFMALLLLFAQTVPYATFHVASGAVNRSRPLPLRQQRDTSWSPYSFFFRDXXXXXXXXXXXXXXXXXXXXSPEGPFSPAPL-RSTPDWSSVFRPSPAA----------------------------------------------DAALFVLARPPHVET-----------HGXXXXXXXXXXXXXXXXXXXXXPTASSRAWWSI------------------------------------------------SPSGRLA----RVSSSAWETAAA------GVSAGAGPS----AVAPAAATASSCNTQQGSANXXXXXXXXXXXXXGGRRGETEGR-------------------------------------------RGDGAAAGGGSEGRE-------EWYAMTLLFLRGPVIPGTSGLRAGAVIWQTVQGHCILALTLLLLLALYSVVRLRFVVLARHLEVAATAGNNGGVDSGLAT-GGNGVRGQREMGAGAGDPNNDAGGGVGDEAAAAVAVANAGNAFRRGRDGFIPGMGPRLGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMLERDGQMGLDLKVLTMGLLELLVLPLWVGVAADLFSLPLLASTLEARAAWALANPFSSLALHWGAGSMAVGVVSCLGREIGRALKPDLLPPWANRPAEQGLEE--VLVRMTNENFLAQLRSFLVSVVAYPAALALMVMVPTHCKGFLA---PR-LTSRFLPEFWLSPMVLGIGEPTQGDRLGMDLVIVHFILPVVMEHLKIRGPVRRAACWVLSAACGATGTRGLLLHPALVAGRGAAANDPDDLDDLELPQP 1228
BLAST of mRNA_F-serratus_M_contig868.20038.1 vs. uniprot
Match: A0A6H5L475_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L475_9PHAE) HSP 1 Score: 424 bits (1089), Expect = 1.960e-132 Identity = 207/275 (75.27%), Postives = 239/275 (86.91%), Query Frame = 3
Query: 4122 EGFRVSAAFFVVCVALTVMPAATVLLPLLTGRAMFGAVGLPLDDDLPPLVAGAISCSAAAWAFSGLFRLRVAAGEHRRIVWDVIVLLGKWIVIGTLLLGALPGLTGLLVHDALRGPLPPAEETAALTWGKIWALGLVCVKLWARQGAYIIT*CVLAGAVGDEAWQGRLRRVRINGIRGVDFKFTLLEVCIPLLDRVGQYYFFPYLMNRFVLPLLVVNQRDLRLLQKGMPFVYLLMKAMWAAAMYGVKKVKALHDLIRDDEYLVGLELENMPPQGH 4946
E RV AA +VC+AL V+PAATVLLPL+TGR++F A+GLPLDDDLPPLVAG + C+A AWA S LFRL+VAAG+HRR++ + ++L GKW VIG LL+GALPGLTGLLVHDALRGPLPP EETAALTWGKIWALGLVCVKLWAR CVLAGAV EAWQGRLRR+R NG RGVDFKFT+LEVC PLLD VGQ+YF+P+L+NRF LPLLV NQRDLR++QKGMPFV+LL++A+W+AAM+ V K+KALHDLIRDDEYLVGLELENMPPQGH
Sbjct: 3 EATRVYAAGSLVCIALAVVPAATVLLPLVTGRSLFAAMGLPLDDDLPPLVAGGLLCAAWAWALSALFRLQVAAGQHRRLLCNALMLAGKWFVIGALLMGALPGLTGLLVHDALRGPLPPTEETAALTWGKIWALGLVCVKLWAR--------CVLAGAVRHEAWQGRLRRLRDNGFRGVDFKFTILEVCFPLLDVVGQFYFWPHLLNRFALPLLVANQRDLRVIQKGMPFVFLLLRALWSAAMFVVNKMKALHDLIRDDEYLVGLELENMPPQGH 269
BLAST of mRNA_F-serratus_M_contig868.20038.1 vs. uniprot
Match: A0A6H5LAW9_9PHAE (RING-CH-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAW9_9PHAE) HSP 1 Score: 331 bits (848), Expect = 5.520e-89 Identity = 176/267 (65.92%), Postives = 201/267 (75.28%), Query Frame = 1
Query: 160 DPDEGPECRVCRGGDEGGTRPLVHPCRCSGSIKYVHQDCLMEWLRSRQGGSNAAAAXXXXXXXXXXXXXAGPNRDAIALQAQRCELCRERLVFKARYRPGAPAQLGLSQFLRGATRRATPRLMDAFRGTLNMLMWGVAVPVLYCAMFRMGLGVALLFAQEFAAFARGENAATAPEFLEAIDASTAGVQTNSLPGIERIWWWTWMDLLGDWCGGVTLMIGVMCLGPPCVELAVEFVAMLKLVPIWLEYWWLGED------APAPRGQN 942
D DE PECRVCRG DEGG RPLVHPCRC GSIKYVHQDCL+EWLRSR GG XXXXXXXXX G DA ALQAQRCELCRE+LVFKARYRPGAPA+LG+ QF+RGA RRATPRL+DAFRG LNM MWG+A+PVLYC +FR+G+G++LL AQEF+ GE P A G + SLPG+ER+ W +WMD+LGDWCGGV LMIGVMCLGPPCVELA+EFV ++K +PI LE WW G++ AP PR N
Sbjct: 358 DSDEEPECRVCRGDDEGGARPLVHPCRCRGSIKYVHQDCLVEWLRSRGGGXXXXXXXXXXXXXXX-----GVPDDASALQAQRCELCREKLVFKARYRPGAPAKLGVYQFVRGAVRRATPRLLDAFRGALNMQMWGLAIPVLYCLLFRLGIGLSLLLAQEFSVIFLGEGGGGPPS------AVAGGGRGVSLPGLERVGWGSWMDILGDWCGGVGLMIGVMCLGPPCVELALEFVNLVKALPIVLECWWFGDEDGLRGQAPLPRLNN 613
BLAST of mRNA_F-serratus_M_contig868.20038.1 vs. uniprot
Match: A0A6H5L2V3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2V3_9PHAE) HSP 1 Score: 92.0 bits (227), Expect = 9.180e-19 Identity = 41/52 (78.85%), Postives = 45/52 (86.54%), Query Frame = 1
Query: 3814 MDLVLFHFILPVVMEHLKIRGPVRRAVCWVLTIGCGVTGTRGVLLHPALAMG 3969
MDLV+ HFILPVVMEHLKIRGPVR+A CWVL+ CGVTGTR +LLHPAL G
Sbjct: 1 MDLVIVHFILPVVMEHLKIRGPVRKAACWVLSAACGVTGTRRLLLHPALVAG 52
BLAST of mRNA_F-serratus_M_contig868.20038.1 vs. uniprot
Match: A0A7S1DFR3_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DFR3_HEMAN) HSP 1 Score: 95.1 bits (235), Expect = 1.050e-17 Identity = 51/135 (37.78%), Postives = 66/135 (48.89%), Query Frame = 1
Query: 178 ECRVCRGGDEGGTRPLVHPCRCSGSIKYVHQDCLMEWLRSRQGGSNAAAAXXXXXXXXXXXXXAGPNRDAIALQAQRCELCRERLVFKARYRPGAPAQLGLSQFLRGATRRATPRLMDAFRGTLNMLMWGVAVPV 582
ECR+CRGG EGG L+HPCRC+GSIKYVHQ+CL +WL G S +RCELC F Y AP++L ++F G + R + A R TL + +W V +PV
Sbjct: 18 ECRICRGGHEGGA--LLHPCRCAGSIKYVHQECLDQWLARSSGAS------------------------------KRCELCHHPFTFSPVYADNAPSRLPTTEFAMGLLKLVAKRTLLAMRTTLVLFLWVVCLPV 120
BLAST of mRNA_F-serratus_M_contig868.20038.1 vs. uniprot
Match: A0A7S2SRU5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SRU5_9STRA) HSP 1 Score: 99.0 bits (245), Expect = 7.320e-17 Identity = 85/289 (29.41%), Postives = 126/289 (43.60%), Query Frame = 3
Query: 4092 QGVHRPNGLWEGFRVSAAFFVVCVALTVMPAATVLLPLLTGRAMFGAVGLPLDDDLPPLVAGAISCSAAAWAFSGLFRLRVAAGEHRRIVWDVIVLLGKWIVIGTLLLGALPGLTGLLVHDALRGPLP-PAEETAALTWGKIWALGLVCVKLWARQGAYIIT*CVLAGAVGDEAWQGRLRRVRINGIRGVDFKFTLLEVCIPLLDRVGQYYFFPYLMNRFVLPLLVVNQRDLRLLQKGMPFVYLLMKAMWAAAMYGVKKVKALHDLIRDDEYLVGLELENMPPQGHDSS 4955
Q H P L F A + + AL + +A +L+PL GR + DL ++GA C W L A H V +V L + + LLL A P L G L P P +ET A W + WALGLV +K+W R VL G DE W+ R+ GI V F++ + EV +P + + FP + V P + + + LQ+ ++ ++ A + V+ ++ +HD IRDD YL+GL+L N + D S
Sbjct: 867 QSQHMPASLSACF---ALYGLSIAALALSASAALLVPLTLGRHLQSLWTWWPKHDLYSFLSGAGMC----WGLISLAAGFHGAARHWHHVHRWLVSLARCSALVLLLLAAAPLLLGCLFEQMFVIPFRLPLDETVATPWVQNWALGLVFLKIWIRV-------MVLGG---DEVWRRRIDEFYRQGIHAVPFEWAMKEVALPTIVTLADAMAFPVVFGHLVAPAVASSIQQHAALQRLAFPTFVGVRVASIAGHHAVRYLRNVHDKIRDDRYLLGLQLNNAVHKRQDQS 1138
BLAST of mRNA_F-serratus_M_contig868.20038.1 vs. uniprot
Match: A0A7S0BNA2_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BNA2_9RHOD) HSP 1 Score: 87.0 bits (214), Expect = 5.890e-16 Identity = 52/143 (36.36%), Postives = 67/143 (46.85%), Query Frame = 1
Query: 163 PDEGPECRVCRGGDEGGTRPLVHPCRCSGSIKYVHQDCLMEWLRSRQGGSNAAAAXXXXXXXXXXXXXAGPNRDAIALQAQRCELCRERLVFKARYRPGAPAQLGLSQFLRGATRRATPRLMDAFRGTLNMLMWGVAVPVLYC 591
PDE ECR+CR G E RPL PCRCSGSI++ H+DCL++WL Q GS+ +CELC + F+ YRPGAP +L L G R + A R L + +W +PV C
Sbjct: 21 PDEPDECRICRSGPEM-NRPLFFPCRCSGSIRFTHEDCLVQWLT--QSGSS------------------------------KCELCHYQFKFEREYRPGAPRKLSAGDMLVGLMGRLKQMVRSAARILLVLTVWIFLLPVGTC 130
BLAST of mRNA_F-serratus_M_contig868.20038.1 vs. uniprot
Match: A0A7S2W4V5_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2W4V5_9STRA) HSP 1 Score: 93.2 bits (230), Expect = 3.970e-15 Identity = 52/141 (36.88%), Postives = 72/141 (51.06%), Query Frame = 1
Query: 181 CRVCRGGDEGGTRPLVHPCRCSGSIKYVHQDCLMEWLRSRQGGSNAAAAXXXXXXXXXXXXXAGPNRDAIALQAQRCELCRERLVFKARYRPGAPAQLGLSQFLRGATRRATPRLMDAFRGTLNMLMWGVAVPVLYCAMFR 603
CR+CR G+E RPL HPC C+GSIK+VH+DCL+EWL GSN++++ +CELC R F Y+PGAP L + +F + RA + R + L WG+ +P+ C MFR
Sbjct: 39 CRICRCGEEE-DRPLFHPCICTGSIKHVHEDCLLEWLAH---GSNSSSSR------------------------SKCELCGHRFSFTPVYKPGAPNSLSVLEFASLSAVRAFKSIPFIIRFIVVGLTWGIFIPIATCVMFR 151
BLAST of mRNA_F-serratus_M_contig868.20038.1 vs. uniprot
Match: A0A7S1XRK8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XRK8_9STRA) HSP 1 Score: 83.2 bits (204), Expect = 1.200e-14 Identity = 44/114 (38.60%), Postives = 55/114 (48.25%), Query Frame = 1
Query: 178 ECRVCRGGDEGGTRPLVHPCRCSGSIKYVHQDCLMEWLRSRQGGSNAAAAXXXXXXXXXXXXXAGPNRDAIALQAQRCELCRERLVFKARYRPGAPAQLGLSQFLRGATRRATP 519
ECR+CRGG E +PL HPCRC+GSI+YVHQ CL EWLR R G CE+C + F+ YRP P QLG++ L + R+ P
Sbjct: 56 ECRICRGGPEP-DQPLFHPCRCAGSIQYVHQPCLEEWLRFRDRGPEPT-----------------------------CEVCGYQYAFRRIYRPDTPKQLGIAHVLWSSVRKVCP 139
BLAST of mRNA_F-serratus_M_contig868.20038.1 vs. uniprot
Match: A0A2R5GV60_9STRA (E3 ubiquitin-protein ligase MARCH6 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GV60_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 1.500e-14 Identity = 56/141 (39.72%), Postives = 73/141 (51.77%), Query Frame = 1
Query: 181 CRVCRGGDEGGTRPLVHPCRCSGSIKYVHQDCLMEWLRSRQGGSNAAAAXXXXXXXXXXXXXAGPNRDAIALQAQRCELCRERLVFKARYRPGAPAQLGLSQFLRGATRRATPRLMDAFRGTLNMLMWGVAVPVLYCAMFR 603
CR+CR G E RPL HPC C+GSIK+VH+DCLMEWL S++A+A + PN CELC + F Y PGAP L +++FLR + R L R + + WGV +P+ C MFR
Sbjct: 621 CRICRCGVEE-KRPLYHPCVCAGSIKFVHEDCLMEWL------SHSASATG-----------SRPN----------CELCGHKFRFTPVYEPGAPQSLTVAEFLRLSIVRGMRTLPFIGRIIVVAITWGVFIPIATCVMFR 733 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig868.20038.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig868.20038.1 >prot_F-serratus_M_contig868.20038.1 ID=prot_F-serratus_M_contig868.20038.1|Name=mRNA_F-serratus_M_contig868.20038.1|organism=Fucus serratus male|type=polypeptide|length=1299bp MEWLRSRQGGSNAAAAGAAGAVGAGAAAAAGPNRDAIALQAQRCELCRERback to top mRNA from alignment at F-serratus_M_contig868:150248..187498- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig868.20038.1 ID=mRNA_F-serratus_M_contig868.20038.1|Name=mRNA_F-serratus_M_contig868.20038.1|organism=Fucus serratus male|type=mRNA|length=37251bp|location=Sequence derived from alignment at F-serratus_M_contig868:150248..187498- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig868:150248..187498- >mRNA_F-serratus_M_contig868.20038.1 ID=mRNA_F-serratus_M_contig868.20038.1|Name=mRNA_F-serratus_M_contig868.20038.1|organism=Fucus serratus male|type=CDS|length=7794bp|location=Sequence derived from alignment at F-serratus_M_contig868:150248..187498- (Fucus serratus male)back to top |