prot_F-serratus_M_contig127.2001.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_F-serratus_M_contig127.2001.1
Unique Name	prot_F-serratus_M_contig127.2001.1
Type	polypeptide
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length	355

Homology

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BLAST of mRNA_F-serratus_M_contig127.2001.1 vs. uniprot
Match: A0A6H5L9L8_9PHAE (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L9L8_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 6.980e-44
Identity = 75/85 (88.24%), Postives = 80/85 (94.12%), Query Frame = 0

Query:    1 MGEDPGHIHIGNLHPRVTVTDIEPYLIKYGTITNLWVAKNPPGFAFCDFQTRAMADDCVRGMDGMKLENLAINVEIARRPKGRAQ 85
            MGE+PGHIHIGNLHPRV+V D+EP LIKYGTITNLWVAKNPPGFAFCDFQ RAMADDCVRGMDG+K+ENLAI VEIARRPK RAQ
Sbjct:    1 MGEEPGHIHIGNLHPRVSVADLEPKLIKYGTITNLWVAKNPPGFAFCDFQNRAMADDCVRGMDGLKMENLAITVEIARRPKARAQ 85

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BLAST of mRNA_F-serratus_M_contig127.2001.1 vs. uniprot
Match: A0A2G8LR44_STIJA (Putative RNA-binding protein Rsf1 isoform X2 n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8LR44_STIJA)

HSP 1 Score: 80.9 bits (198), Expect = 8.520e-15
Identity = 42/94 (44.68%), Postives = 59/94 (62.77%), Query Frame = 0

Query:    6 GHIHIGNLHPRVTVTDIEPYLIKYGTITNLWVAKNPPGFAFCDFQTRAMADDCVRGMDGMKLENLAINVEIARR-PKGRAQGRFGRGMGGARFG 98
            G +++G L+   T  D+E    KYG I +LW+A+NPPGFAF +F ++  AD+C+R +DG       I VE++R  P GR +GR GRG  G R G
Sbjct:   19 GRLYVGGLNHSATKDDVERAFSKYGKIIDLWLARNPPGFAFVEFSSQHDADECLRALDGSDFMGNQIKVELSRAMPGGRGRGR-GRGGRGGRGG 111

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BLAST of mRNA_F-serratus_M_contig127.2001.1 vs. uniprot
Match: A0A443S309_9ACAR (RNA-binding protein 1-like protein n=1 Tax=Leptotrombidium deliense TaxID=299467 RepID=A0A443S309_9ACAR)

HSP 1 Score: 78.2 bits (191), Expect = 5.580e-14
Identity = 51/128 (39.84%), Postives = 70/128 (54.69%), Query Frame = 0

Query:    8 IHIGNLHPRVTVTDIEPYLIKYGTITNLWVAKNPPGFAFCDFQTRAMADDCVRGMDGMKLENLAINVEIAR-RPKGRAQGRFGRGMGGARFGXXXXXRDWGRIARD---TRDYRSR-----RSRSRDR 126
            ++IGNL    +  ++E    KYG + N+WVA+NPPGFAF +F+    A+D VRG+DG ++    + VE++  R + R Q   G G G +R        DW R   D    RDYR R     RSRSR R
Sbjct:   15 VYIGNLSDSCSKNEVETSFSKYGPLKNVWVARNPPGFAFVEFEDPRDAEDAVRGLDGTRISGSRVRVEMSHGRRRNRGQHNSG-GYGRSRHN------DWDRDGADGGRNRDYRDRGSYRGRSRSRSR 135

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BLAST of mRNA_F-serratus_M_contig127.2001.1 vs. uniprot
Match: A0A6J1SFY2_FRAOC (RNA-binding protein 1-like isoform X2 n=2 Tax=Thripinae TaxID=153976 RepID=A0A6J1SFY2_FRAOC)

HSP 1 Score: 75.9 bits (185), Expect = 2.180e-13
Identity = 36/91 (39.56%), Postives = 56/91 (61.54%), Query Frame = 0

Query:    8 IHIGNLHPRVTVTDIEPYLIKYGTITNLWVAKNPPGFAFCDFQTRAMADDCVRGMDGMKLENLAINVEIARRPKGRAQGRFGRGMGGARFG 98
            +++GNL    +  ++E    KYG + N+WVA+NPPGFAF +F+    A+D VRG+DG ++    + VE++    GR++ R G G G  R G
Sbjct:   12 VYVGNLGSSASKHELESAFTKYGPLRNVWVARNPPGFAFIEFEDPRDAEDAVRGLDGTRMCGTRVRVEMS---NGRSRSRGGAGGGSRRAG 99

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BLAST of mRNA_F-serratus_M_contig127.2001.1 vs. uniprot
Match: A0A6P6YHL2_DERPT (RNA-binding protein 1-like n=1 Tax=Dermatophagoides pteronyssinus TaxID=6956 RepID=A0A6P6YHL2_DERPT)

HSP 1 Score: 77.4 bits (189), Expect = 3.020e-13
Identity = 37/91 (40.66%), Postives = 54/91 (59.34%), Query Frame = 0

Query:    8 IHIGNLHPRVTVTDIEPYLIKYGTITNLWVAKNPPGFAFCDFQTRAMADDCVRGMDGMKLENLAINVEIARRPKGRAQGRFGRGMGGARFG 98
            +++GNL      TD+E    K+G + N+WVA+NPPGFAF +F+    A+D VR +DG ++    + VE++        GR  RG GG RFG
Sbjct:   15 VYVGNLQDNCLKTDVENAFSKFGPLKNVWVARNPPGFAFVEFEDSRDAEDSVRALDGTRIGGNRVRVEMS-------HGRSRRGGGGRRFG 98

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BLAST of mRNA_F-serratus_M_contig127.2001.1 vs. uniprot
Match: A0A3Q0JA05_DIACI (serine/arginine-rich splicing factor 7 n=1 Tax=Diaphorina citri TaxID=121845 RepID=A0A3Q0JA05_DIACI)

HSP 1 Score: 76.6 bits (187), Expect = 3.340e-13
Identity = 48/128 (37.50%), Postives = 66/128 (51.56%), Query Frame = 0

Query:    4 DPGHIHIGNLHPRVTVTDIEPYLIKYGTITNLWVAKNPPGFAFCDFQTRAMADDCVRGMDGMKLENLAINVEIA--RRPKGRAQGRFGRGMG--------GARFGXXXXXRDWGRIARDTRDYRSRRS 121
            D   I++G+L    T  DIE     YG I N+WVA+NPPGF F +F+ R  A+D VRG DG ++    + VE++  ++ +GR+ GR G   G        G  F       + G      RD RSRRS
Sbjct:   12 DDCKIYVGDLSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNPQKMRGRSNGRSGGDRGYRGSVRARGRPFNPDDKCYECGGRGHYARDCRSRRS 139

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BLAST of mRNA_F-serratus_M_contig127.2001.1 vs. uniprot
Match: C4WV83_ACYPI (ACYPI006320 protein n=17 Tax=Aphididae TaxID=27482 RepID=C4WV83_ACYPI)

HSP 1 Score: 76.3 bits (186), Expect = 4.180e-13
Identity = 38/85 (44.71%), Postives = 55/85 (64.71%), Query Frame = 0

Query:    8 IHIGNLHPRVTVTDIEPYLIKYGTITNLWVAKNPPGFAFCDFQTRAMADDCVRGMDGMKLENLAINVEIA-RRPKGRAQGRFGRG 91
            ++IGNL    T  +IE    KYG + N W+A+NPPGFAF +F+    A+D VRG+DG ++  + + VE++  RP+G   GR GRG
Sbjct:   12 VYIGNLGQNGTKHEIEASFTKYGPLKNTWIARNPPGFAFVEFEDPRDAEDAVRGLDGTRICGVRVRVEMSSNRPRG---GRDGRG 93

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BLAST of mRNA_F-serratus_M_contig127.2001.1 vs. uniprot
Match: A0A6M2DU40_9NEOP (Putative rna-binding protein 1 isoform x1 n=3 Tax=Pulicidae TaxID=7511 RepID=A0A6M2DU40_9NEOP)

HSP 1 Score: 75.1 bits (183), Expect = 5.640e-13
Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = 0

Query:    8 IHIGNLHPRVTVTDIEPYLIKYGTITNLWVAKNPPGFAFCDFQTRAMADDCVRGMDGMKLENLAINVEIARRPKGRAQGRFGRG 91
            ++IGNL    T  DIE +  KYG + N+WVA+NPPGFAF +++    A D VRG+DG +     + VE++    GR++G+  RG
Sbjct:   13 VYIGNLGHSATKHDIETHFSKYGPLRNVWVARNPPGFAFVEYEDPRDAQDAVRGLDGTRCCGTHVKVEMS---SGRSRGKNSRG 93

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BLAST of mRNA_F-serratus_M_contig127.2001.1 vs. uniprot
Match: A0A819VS78_9BILA (Hypothetical protein n=2 Tax=Rotaria TaxID=231623 RepID=A0A819VS78_9BILA)

HSP 1 Score: 77.8 bits (190), Expect = 5.980e-13
Identity = 39/98 (39.80%), Postives = 57/98 (58.16%), Query Frame = 0

Query:    2 GEDPGHIHIGNLHPRVTVTDIEPYLIKYGTITNLWVAKNPPGFAFCDFQTRAMADDCVRGMDGMKLENLAINVEIARRPK--GRAQGRFGRGMGGARF 97
            GE    +H+  L+PR +  DIE    K+G I  +W+A NPP FAF +F+ RA A+D V+ +DG  ++N  + +  AR+    GR  G F  G GG R+
Sbjct:   46 GESGYRLHVSPLNPRTSRRDIEKIFSKHGKINEVWMATNPPCFAFVNFKHRADAEDAVQALDGKMIDNSRVGISFARKRTVGGRRGGSFNGGGGGDRY 143

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BLAST of mRNA_F-serratus_M_contig127.2001.1 vs. uniprot
Match: A0A3S3PST0_9ACAR (RNA-binding protein-like protein (Fragment) n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S3PST0_9ACAR)

HSP 1 Score: 76.3 bits (186), Expect = 6.450e-13
Identity = 35/91 (38.46%), Postives = 56/91 (61.54%), Query Frame = 0

Query:    8 IHIGNLHPRVTVTDIEPYLIKYGTITNLWVAKNPPGFAFCDFQTRAMADDCVRGMDGMKLENLAINVEIARRPKGRAQGRFGRGMGGARFG 98
            ++IGNL    +  D+E    KYG + N+WVA+NPPGFAF +F+    A+D VRG+DG ++    + VE++   + R +G +    G +R+G
Sbjct:   32 VYIGNLSDNCSKMDVESAFAKYGPLKNVWVARNPPGFAFVEFEDPRDAEDAVRGLDGTRIGGSRVRVEMSH-GRTRNRGNYNSSYGRSRYG 121

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig127.2001.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig127.2001.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5L9L8_9PHAE	6.980e-44	88.24	RRM domain-containing protein n=2 Tax=Ectocarpus T...	[more]
A0A2G8LR44_STIJA	8.520e-15	44.68	Putative RNA-binding protein Rsf1 isoform X2 n=1 T...	[more]
A0A443S309_9ACAR	5.580e-14	39.84	RNA-binding protein 1-like protein n=1 Tax=Leptotr...	[more]
A0A6J1SFY2_FRAOC	2.180e-13	39.56	RNA-binding protein 1-like isoform X2 n=2 Tax=Thri...	[more]
A0A6P6YHL2_DERPT	3.020e-13	40.66	RNA-binding protein 1-like n=1 Tax=Dermatophagoide...	[more]
A0A3Q0JA05_DIACI	3.340e-13	37.50	serine/arginine-rich splicing factor 7 n=1 Tax=Dia...	[more]
C4WV83_ACYPI	4.180e-13	44.71	ACYPI006320 protein n=17 Tax=Aphididae TaxID=27482...	[more]
A0A6M2DU40_9NEOP	5.640e-13	42.86	Putative rna-binding protein 1 isoform x1 n=3 Tax=...	[more]
A0A819VS78_9BILA	5.980e-13	39.80	Hypothetical protein n=2 Tax=Rotaria TaxID=231623 ...	[more]
A0A3S3PST0_9ACAR	6.450e-13	38.46	RNA-binding protein-like protein (Fragment) n=1 Ta...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 7..75 e-value: 7.2E-14 score: 62.1
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 9..72 e-value: 6.4E-11 score: 41.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 6..79 score: 12.475
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 1..107 e-value: 9.1E-16 score: 60.2
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 8..161
None	No IPR available	PANTHER	PTHR23147:SF18	SERINE/ARGININE-RICH SPLICING FACTOR 7	coord: 8..161
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 4..107

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig127	contig	F-serratus_M_contig127:353301..359012 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Fucus serratus MALE	2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-16
OGS1.0 of Fucus serratus male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig127.2001.1	mRNA_F-serratus_M_contig127.2001.1	Fucus serratus male	mRNA	F-serratus_M_contig127 352325..359149 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_F-serratus_M_contig127.2001.1 ID=prot_F-serratus_M_contig127.2001.1|Name=mRNA_F-serratus_M_contig127.2001.1|organism=Fucus serratus male|type=polypeptide|length=355bp
MGEDPGHIHIGNLHPRVTVTDIEPYLIKYGTITNLWVAKNPPGFAFCDFQ
TRAMADDCVRGMDGMKLENLAINVEIARRPKGRAQGRFGRGMGGARFGGG
GGGRDWGRIARDTRDYRSRRSRSRDRDYRRRESRSPPRRENRDRRDYARD
YGRSKSKRDSRDRAHSRRSRSRSRDRRHSRSRSTRDDRGSRGRSPSPSPR
SPRRERKALSRDRDRGTRSRSRSGGRGGRRDRDDDYDRKQNGGKSNGHNK
DSDKKDRGKGGRKEMDQSPPAKRSKIDEEEDEEEEEEDEASGRRKHEDDG
RGDRQGEEDDGEEGRDGEGEDEIVEGMASKGGGSAEENDEDVEDGEGDVI
SEDD*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf