mRNA_F-serratus_M_contig864.20018.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig864.20018.1
Unique NamemRNA_F-serratus_M_contig864.20018.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig864.20018.1 vs. uniprot
Match: D8LQI5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQI5_ECTSI)

HSP 1 Score: 185 bits (469), Expect = 5.180e-55
Identity = 91/118 (77.12%), Postives = 103/118 (87.29%), Query Frame = 1
Query:  274 MPLAD-AASKLLPKESADGSVKFSNPGVGDFQVFDALVKYPGAFELKIIGVDDESFVGDIRNVVAGCLTKGEEHLLKCTTREKGKYVSISLKVYVESSTQLYKCYEVINEDSRVKFKF 624
            MPLAD AASKLL KE  DGS KF NP VGDFQV DALV+YPG+F+LKIIGVDD++FV DIR  VAGCLT GE++++KC+TREKGKY SI+LKV VE+STQLYKCYEVINED RVKFKF
Sbjct:    1 MPLADKAASKLLAKEGPDGSSKFDNPAVGDFQVLDALVEYPGSFDLKIIGVDDDTFVSDIRKAVAGCLTNGEDNVIKCSTREKGKYTSITLKVRVENSTQLYKCYEVINEDKRVKFKF 118          
BLAST of mRNA_F-serratus_M_contig864.20018.1 vs. uniprot
Match: D7FUE3_ECTSI (UPF0250 protein NE1487 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUE3_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 3.750e-12
Identity = 39/89 (43.82%), Postives = 60/89 (67.42%), Query Frame = 1
Query:  364 QVFDALVKYPGAFELKIIGVDDESFVGDIRNVVAGCLTKGEEHLLKCTTRE--KGKYVSISLKVYVESSTQLYKCYEVINEDSRVKFKF 624
            + F+ LV YP  FE+K+IG+++ SF  DI   V+  + + E   ++ T R+   G+Y SI++   V+++T LYKCYE+I+ED RVKFKF
Sbjct:   93 RAFEYLVDYPCEFEIKVIGINEGSFADDIAATVSA-VCEVETSDVRFTVRDTTSGRYQSITVHAPVKNATMLYKCYELIDEDPRVKFKF 180          
BLAST of mRNA_F-serratus_M_contig864.20018.1 vs. uniprot
Match: A0A6U1NFE4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1NFE4_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 4.240e-12
Identity = 36/87 (41.38%), Postives = 57/87 (65.52%), Query Frame = 1
Query:  364 QVFDALVKYPGAFELKIIGVDDESFVGDIRNVVAGCLTKGEEHLLKCTTREKGKYVSISLKVYVESSTQLYKCYEVINEDSRVKFKF 624
            +VF+  V+YP  F++K+IGV    F  D+ + VA C    +   +K  TR++GKY S+S+   V+ ++Q+YKCYE +++D RV FKF
Sbjct:  100 RVFETHVEYPCEFQIKVIGVRQGQFEQDMVDKVARCCGVEDPTQIKYKTRDQGKYRSVSIFAPVQMASQVYKCYEELDKDERVLFKF 186          
BLAST of mRNA_F-serratus_M_contig864.20018.1 vs. uniprot
Match: A0A7S1BKS9_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BKS9_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.660e-11
Identity = 39/87 (44.83%), Postives = 57/87 (65.52%), Query Frame = 1
Query:  364 QVFDALVKYPGAFELKIIGVDDESFVGDIRNVVAGCLTKGEEHLLKCTTREKGKYVSISLKVYVESSTQLYKCYEVINEDSRVKFKF 624
            +VF++LV+YP  F +KI+G  +  FV D+ ++VA     G   +   + REKGK+ SI+++  VE++  LYK YEVI  D RVKFKF
Sbjct:  210 RVFESLVEYPCTFPIKIVGAKEGQFVTDMVDLVAETCNVGRTDVTY-SEREKGKWTSITVQAPVENAQMLYKVYEVIGRDPRVKFKF 295          
BLAST of mRNA_F-serratus_M_contig864.20018.1 vs. uniprot
Match: A0A7S2GUM6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GUM6_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.110e-10
Identity = 35/92 (38.04%), Postives = 58/92 (63.04%), Query Frame = 1
Query:  349 GVGDFQVFDALVKYPGAFELKIIGVDDESFVGDIRNVVAGCLTKGEEHLLKCTTREKGKYVSISLKVYVESSTQLYKCYEVINEDSRVKFKF 624
            G  + +VF+ LV YP  F+LK+IG  +  F  D+  +++  +T  E  ++K T+R+  KY+S+S++  V ++  LY+CY  + EDSRVK  F
Sbjct:   57 GETESRVFERLVDYPCEFQLKVIGRKEGEFEADMIKIISQ-VTGVEAEVIKFTSRDTPKYLSVSIQAPVANAEMLYECYGALGEDSRVKAAF 147          
BLAST of mRNA_F-serratus_M_contig864.20018.1 vs. uniprot
Match: M2XRZ9_GALSU (Uncharacterized protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XRZ9_GALSU)

HSP 1 Score: 68.6 bits (166), Expect = 6.370e-10
Identity = 38/90 (42.22%), Postives = 54/90 (60.00%), Query Frame = 1
Query:  355 GDFQVFDALVKYPGAFELKIIGVDDESFVGDIRNVVAGCLTKGEEHLLKCTTREKGKYVSISLKVYVESSTQLYKCYEVINEDSRVKFKF 624
            G  ++ D LV +P  F+ KIIG+   +FV DI + VA  L     ++ + +TR+KGKY SI++     SS Q+Y  Y  I+ D RVKFKF
Sbjct:  115 GQRRLIDELVDFPCKFQFKIIGIRQGNFVEDIVDCVAEVLQIDPSYM-EVSTRDKGKYRSITIDAPCNSSEQVYSIYAAIDRDPRVKFKF 203          
BLAST of mRNA_F-serratus_M_contig864.20018.1 vs. uniprot
Match: A0A836CJU5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJU5_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.440e-9
Identity = 41/114 (35.96%), Postives = 63/114 (55.26%), Query Frame = 1
Query:  289 AASKLLPKESADGSVKFSNPGVGDFQVFDALVKYPGAFELKIIGVDDESFVGDIRNVVAGCLTKGEEHLLKCTTRE--KGKYVSISLKVYVESSTQLYKCYEVINEDSRVKFKF 624
            A S +L  ++     K  NP     + F+ LV YP  F++K +G +  +   D+  +V G + + E   ++ T R+   GKY S++L   V +S  LYKCYEVI +D RV+FKF
Sbjct:   42 ALSMILRTDADREGRKMGNP-----RAFEYLVDYPCKFQIKAVGHNKGNLADDLAALV-GSVCEVEPAAVEYTVRDTDSGKYRSVTLMAPVSNSDMLYKCYEVIGQDERVRFKF 149          
BLAST of mRNA_F-serratus_M_contig864.20018.1 vs. uniprot
Match: A0A7S2SR06_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SR06_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 9.300e-8
Identity = 33/88 (37.50%), Postives = 55/88 (62.50%), Query Frame = 1
Query:  367 VFDALVKYPGAFELKIIGVDDESFVGDIRNVVAGCLTKGEEHLLKCTTRE--KGKYVSISLKVYVESSTQLYKCYEVINEDSRVKFKF 624
            VF+ ++ YP  FE+K+IG  +  F  D+  +++  +T      +  +TRE    K+ S+S+K  V++S  LY+CYE +++D RVKFKF
Sbjct:   84 VFERMLDYPCEFEIKVIGRLEGEFARDMVAIIS-TVTGVPAMDIAFSTRETPNNKFTSVSIKATVQTSDMLYQCYEELDKDPRVKFKF 170          
BLAST of mRNA_F-serratus_M_contig864.20018.1 vs. uniprot
Match: A0A7S4DS48_9EUKA (Hypothetical protein n=3 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DS48_9EUKA)

HSP 1 Score: 57.8 bits (138), Expect = 8.380e-6
Identity = 29/85 (34.12%), Postives = 51/85 (60.00%), Query Frame = 1
Query:  364 QVFDALVKYPGAFELKIIGVDDESFVGDIRNVVAGCLTKGEEHLLKCTTREKGKYVSISLKVYVESSTQLYKCYEVINEDSRVKF 618
            +VFD L++YP   E+KI+G  +     ++R ++ G +T  +   L  ++REKGK+VS+S+   V+SS  LY CY  +  +   ++
Sbjct:  210 RVFD-LLEYPCDHEIKIVGAKESDIEDNVRAIIGG-ITGADPKSLVTSSREKGKWVSVSVMAPVQSSDMLYDCYSKLQAERSFRY 292          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig864.20018.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D8LQI5_ECTSI5.180e-5577.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FUE3_ECTSI3.750e-1243.82UPF0250 protein NE1487 n=2 Tax=Ectocarpus TaxID=28... [more]
A0A6U1NFE4_9STRA4.240e-1241.38Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1BKS9_9STRA1.660e-1144.83Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S2GUM6_9STRA1.110e-1038.04Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
M2XRZ9_GALSU6.370e-1042.22Uncharacterized protein n=1 Tax=Galdieria sulphura... [more]
A0A836CJU5_9STRA1.440e-935.96Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2SR06_9STRA9.300e-837.50Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S4DS48_9EUKA8.380e-634.12Hypothetical protein n=3 Tax=Lotharella globosa Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig864contigF-serratus_M_contig864:174804..182948 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.9
Seed ortholog evalue9.5e-11
Seed eggNOG ortholog2880.D7FUE3
KEGG koko:K09158
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Protein of unknown function (DUF493)
EggNOG OGs2E2JJ@1,2S9SY@2759
Ec32 ortholog descriptionConserved protein of Unknown function, DUF493 family
Ec32 orthologEc-10_005780.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons4
Model size1061
Cds size615
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig864.20018.1prot_F-serratus_M_contig864.20018.1Fucus serratus malepolypeptideF-serratus_M_contig864 175238..182936 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932535.6559055-UTR-F-serratus_M_contig864:174803..1752371622932535.6559055-UTR-F-serratus_M_contig864:174803..175237Fucus serratus maleUTRF-serratus_M_contig864 174804..175237 -
1690964354.5042202-UTR-F-serratus_M_contig864:174803..1752371690964354.5042202-UTR-F-serratus_M_contig864:174803..175237Fucus serratus maleUTRF-serratus_M_contig864 174804..175237 -
1622932535.734645-UTR-F-serratus_M_contig864:182936..1829481622932535.734645-UTR-F-serratus_M_contig864:182936..182948Fucus serratus maleUTRF-serratus_M_contig864 182937..182948 -
1690964354.569273-UTR-F-serratus_M_contig864:182936..1829481690964354.569273-UTR-F-serratus_M_contig864:182936..182948Fucus serratus maleUTRF-serratus_M_contig864 182937..182948 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932535.6756072-CDS-F-serratus_M_contig864:175237..1752851622932535.6756072-CDS-F-serratus_M_contig864:175237..175285Fucus serratus maleCDSF-serratus_M_contig864 175238..175285 -
1690964354.5187654-CDS-F-serratus_M_contig864:175237..1752851690964354.5187654-CDS-F-serratus_M_contig864:175237..175285Fucus serratus maleCDSF-serratus_M_contig864 175238..175285 -
1622932535.689941-CDS-F-serratus_M_contig864:176933..1771251622932535.689941-CDS-F-serratus_M_contig864:176933..177125Fucus serratus maleCDSF-serratus_M_contig864 176934..177125 -
1690964354.5293872-CDS-F-serratus_M_contig864:176933..1771251690964354.5293872-CDS-F-serratus_M_contig864:176933..177125Fucus serratus maleCDSF-serratus_M_contig864 176934..177125 -
1622932535.708209-CDS-F-serratus_M_contig864:177566..1778281622932535.708209-CDS-F-serratus_M_contig864:177566..177828Fucus serratus maleCDSF-serratus_M_contig864 177567..177828 -
1690964354.5399172-CDS-F-serratus_M_contig864:177566..1778281690964354.5399172-CDS-F-serratus_M_contig864:177566..177828Fucus serratus maleCDSF-serratus_M_contig864 177567..177828 -
1622932535.7214875-CDS-F-serratus_M_contig864:182823..1829361622932535.7214875-CDS-F-serratus_M_contig864:182823..182936Fucus serratus maleCDSF-serratus_M_contig864 182824..182936 -
1690964354.5521464-CDS-F-serratus_M_contig864:182823..1829361690964354.5521464-CDS-F-serratus_M_contig864:182823..182936Fucus serratus maleCDSF-serratus_M_contig864 182824..182936 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig864.20018.1

>prot_F-serratus_M_contig864.20018.1 ID=prot_F-serratus_M_contig864.20018.1|Name=mRNA_F-serratus_M_contig864.20018.1|organism=Fucus serratus male|type=polypeptide|length=205bp
MMQKGRAASATFLMLSTISRSVPAFLLRSASPRVGVVRSDQRAIGQWPAT
LALAKGFGDPPKSTTPKQPADGDGDGDAPRKNKAKSLMPLADAASKLLPK
ESADGSVKFSNPGVGDFQVFDALVKYPGAFELKIIGVDDESFVGDIRNVV
AGCLTKGEEHLLKCTTREKGKYVSISLKVYVESSTQLYKCYEVINEDSRV
KFKF*
back to top

mRNA from alignment at F-serratus_M_contig864:174804..182948-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig864.20018.1 ID=mRNA_F-serratus_M_contig864.20018.1|Name=mRNA_F-serratus_M_contig864.20018.1|organism=Fucus serratus male|type=mRNA|length=8145bp|location=Sequence derived from alignment at F-serratus_M_contig864:174804..182948- (Fucus serratus male)
TCTATAGCGGCGATGATGCAAAAGGGGCGAGCAGCTTCAGCGACCTTTCT CATGTTGAGCACTATTTCTCGGTCGGTACCTGCATTTCTTCTCAGGAGCG CGTCGCCGCGGGTCGGCGTTGTCAGGTATATAACACGCTATATTCCTAGA GCTATCGAGCTTTCAAGCTAGTAATGCTACAGCACATGTAGGATAATAGC GATTGTTGTACAGTGTTTGCAGGATTATTGGTATGTCTCCCTATACTCTA TTTATAGTATACTCTGTTATCCTATATTACTTAATAGTACATCGTAACGC CGTAGACTATCTAATACAGCAGCAAAGTACAAGTAAAGCTCCTGTTTTAT TTTCCAGTAACATTTGACGAGCGGTGTTCACTCGACCCCATCGAACGTGA ACTATTAACTTCCCTCACTTCACCGCACCAACGGTACTTTCGACATGCTA TAACCACTTCATACCAATAGTGGGTGTAGGAAAGAGAGGCGCATACTAAT TGGTCCATAGTGACCTGTCAAGGCAGCACTCGCTCGTAACTACCTTGAGA TTCACTGGCCCTGTGCCTGCAGACTCTCGGCAGTGAACGCCAGCGGTACG CAATTGCGTGACCCAATAAACTCGGGACTAACCCGATGGCGTATGGCGGT TTAAAGTAAATGAATGGACGCCGTCGCGGAACTCGGGAGGAATCCCGTAA GTAAGCACCAGATTCAGCCTGAGTATGGAGATGAACAGGCTGACGCGGGA CGGGACTGCCGAATCCGTCTCACGAGACCAAATTATCAAGTGCGAATGCG GACAGGGAAATATAATGTTTCCCTGTTCAGCTGACCATGAGCAGGAATGT CAACCTTACCCGGTAGATTCATACTCTTGTTACATGTGTTACAATACATA CATACATAACACCGCCGGTACGATAACGGCAGTCGAACTCACACAATTCT AAAGCGAATCGTGTTCGGAGACCTTGAGGGTGCAGTGCGGAGAGGACGGA GTGGGGAGGAGAAAGAGTGGACCGATTGATTTCAGAGCGACATCCGGGTA TTTGGCGTAGCGTGGGATTGGAAAGCGACGGCGTTGGAGGCTGAGGTGTG GGTTGAGATAGGCACGGAGGAAAGAAGGGGTAGACGCGGCTTGGTCAAGA GAGAGACATCGCCAGGAGAAGAGAGAGGCAACGAGACTGGGAAAGTTGTT ATCGCACACGGAAGCGTAGAATTTTTGCGAAGCGACATCCACTGGCCTAG TCGACGAGTCGAAGGAATCCTTGTACCGACGCGAGACGGACCGAGGCGTG GCGCCTAGGCATGTAGATGCGTCATGTGATTTTTATTTTGTTTTCTCCAG ACGAGCAGCTAGGGGGAGGGGAAGGAGGGGGGGGGGGTGCCAGACTTGAT ATTTTGTTCTCTTTTTCCTGTTCAGCAGACCACGAGCGGGATTGGCCACC ATGTAAAGTAGTTTTTCGGGTTGGCAACCAATACGCTGGATGTGAAAAAC AAAAAACAACAACAACAACTGTCTTTCAACAACCCCCCACCCCCCACGCC TCGACCATTTCCCACATTAGCGTCCACGTGTGCCCTCTGGATACCTTTCC TCGCAGCTTTGACACACAAGGGGTCCAGAGGCAACGTCATCCCTAGCCAC TGCTCACAATGCAAACTAACGGCCTGTAACTCCCCCATTAGATATATCGC CCTTTCCCTTCCTTTCCCTTCCCTTCCCTTGCCTTGCCTTGCCTTGCCTT CCTTTGGTTCCTCTCGCTAACCGAGATGTCGCACAACAATAAACCATGAA TGCCGAGGTGTCGTCCACCACTTCCAGCTCTGTTGCCTTTACCTCTTTCT CTGGCAACAACCCTTTACCTAGGCTGCTCCTCCACCCCACCCACATCCTC CAACATCCTCCAACCTCCTTTATAAGCCCTTCGAGACAATCGTGCAACGC GTCCGACTGCGTATCCACGCGCGAAATCTCCCAATCCCCGAATATAAGGT CTTCTGCCTCTCCCCCACAACGTCATATTGAAGGTCTTCTCCGTCATCTC CGTCAGTTTACGTCGGACCCGTTCAGCGATAATTTCGCTTAGGATCGTTT TATTAATAGTTTCAGGGTCCCACCACATCAAAGCTTTGACCTTTTTATGT GCTTCGCCTAGAAACACTACTCTTTCCTATGCTCGAACACTCTCAACAGC CAACAGCCTTACGAGTCCCCTTGCCCGTACAGGAGTACCACACCCTTGCA CTCCTATATCCAGTCCAGTCATCTCACCCTCTCCTCTTGTCATCAACACC GCTGACATTCTATCCCCCCTGTCATCAAAACCGACATTTTATCCCCATCC CCCCCTATATACGCATTCATCACGGTCCTTAGCACCCCAAGAACAGTAAT CGACAACCTCCAGCAACCGTCCATGTTCCTGTTCCTGATACCCCTCTACC CCTCCGTCAAATAATATTCCAGTTTTCCCCGGTGATCATTCACAATACTA TCGCTAGGCCATCGCTAGGCTATCACTAGAAACCGTTCGTCCGAGTACCA CAGCCTCGATGGTTCCTGCTTCACAAACCAAAAGAACGGCGATGATATCA TATCCCTATGCCGTGCCATGCCGTGCTGTGGTTGTGCTGTGATTCCATGT ACCGCCTTCTATGTACCACGGCCACTACGCCTCGCCTCGCCACGTCCGCC GTGAACTTTACGGTCAATATCACTACTCGTTCCGCTTCAGCCTTCTTTCT CGACTTCTCGACCTCCACCATGCATCGCCACCCCCGGCCAGCTCCTCCTC ATTCAGATGCAGTCCACTTAGCAGCAGAAGCTGGCGAACAAAGTGCCGCC ATAGCTACTGGCCGGGCAACGTAAGCAGCGTGGTGTAGCTTCCCGGTGTG TTCCAATATCTCTCGAATCTACGCCGTCAGGCGGTCAGGCGGTCAAGCCG CTAGCCGCCTAGCGATATCGTCCACCTTCCGCTGCAGAAGCGAGATCATC AAGGCCTCCTCTCGGTAATGTCCGTGTCGAGACTCAACCCTAGCACCTCC TCCTCCTCAAGTACACAAGTACACAACCCATGCCATGCCGTCATTTTCTT GGGTGCGAGCAGTGGTTCTTCTCGCGACCCGCGCTCTCTCTACGCCTCAG GATGGTCTCGCCAGCGACCGTGAGAGGGCGAGGCATCGCCTTCCGTCCTG AAATCGCTGGACCTCAATCGAGATCGCGTCATCCGCTCAGAAAACTACAC ACGCGGGATCTTTCGCCCTCCCCCCCCTACCAAACCGCTGCCGGGATCGC ACACCCCGATGGAAGGACGACCGTAGCCCGCCCGGTCGAAGGCGCGAACG ACAGGCGAGTCGGCCGCAACGTCCGCGCGTCGTCTTGCTGTTATTATGGG GTGTGGTAGTGCGGTAGCGAACGCTTCTTTTGGCTGCTGTGGGGGATCTT GCCTCGCGTCAGATAAAGTTATCACTCGGTGGAACTCCTGGCAAGATAGT GCGGTTCTGCTATACCGGTAGTCCGAGTGAGTTTCAACAGTTCCGCGGGA AGACAATCCAATACCACTGTTTTCGCGGTTGTTGTTGCCTTCAGCACTGT AGAAATATCCTCTTCTGTTCCGACATACACAGCTACATCTCGATCCAGAG GACATTTGCGACGAGCTGGTATGGATGTGTCTTTGTGACGTGGGGATCAA GTTTATCGGGTTTCACGTTCAGCTTCCAGCGGAAGAATCAGACTAAGTAC TCCTAGCTCTAGAGCGGTCCTAGAGTGAACCATAACCTCCTGTACCAGCG ATATGCTTGATGCTGACGGTTTCGTGCACAAGATGAAGTAGGGTAGTTAC AAAGAGTGGAGGTAAGGTAGGTACTGCAGGTATCGTAGCGTATCGTCTTG AGCCAGAGCTCTACAGTTTGTATTTTTGGTGGCGTTTTTGTCTTGTTTGT ACTGTATGCCCCTTTCTTTGCTGGGCCCAATCAACCAATCAACGTGCTAT TATGATATAGGTTACCATTACCAATACCTACTGCGACGTTGCGCCTGTGG TCACTAAGGATATTTCCGTCTCTCCCCGGTTCTCCGCTACGATTATTTGT TGCTATGCAATTTCAACACTCAATACACCTCGTCAACCAATGGTTGAGCT TGATTTACTCGGGAGGAATCCCGTAAGTAAGCACCAGATTCAGCCTGAGT ATGGAGATGGGCAGGCTGACGCGGGAACGGGGCTGCCGAACCCGTCTCGC GAGACCAAATTCTCAGGCGCGAAAGGGGACACGGAAATATAAATTTTCCC TGTTCGGCTGACCACGAGCAGGATTGGCAACCTTACCCGGTTGTTCCTTA CTCTTGCTCTACGTGAAGACCATACATATATGCATACATACATACTCACG CTTTCTGCTTCGGAAACAGAATAAAAAAAATGAGTTTTGACGAGGCTCGA ACTCACAAATTATGTGCTACTCGTCCGTAATGGTATGTTTACGGTCTACT GTCTATGGTCTCCCTGTTCAACCGTAGAGGAGGGAGGACAAGGCAACCGC TTACCGCCCGTGTTGAATGGCGAAGAGACTTTGACGTACAAGTGTAGAAC GCAGATACTATTGATACTAATGGTTGAATGGCGAAGAGGTTTTGTCGTAC AAGTGTAGAACGCAGATACTATTGATACTAATTGTTGAATGGCGAAGAGA TTTTGACGTACAAGTGTAGAACGCAGATACTATTGACACTAGTACGTGAA GTTTACAATCGAAACAGTTCGGGTTCTTGAGCATGAAGTCGACGAAGATG TGCGTGTTTTATAGTAAGTGTTAAGACATTTGGAGACATTTTGACATTTG GGTGGTTACAGCCGGTGTGCGGTGTCCCTAATCAAACGGTTCGACGCAGT TCCCCCGGAGGAGGGTGTGGATGCGTTCAGATTTTACGGTGCAGTAAATA GTGGAGAGTTGTACCTTCTCAGGCTGACATGAGTTCAAGCGTGTTTTTTT TAATACAGAAGCAGCAGCCATTATCTACAGATTCCATTCGTACGGAAAAC TTATTGCCATTCCAAGCAAACCTTTGATTTTCTCAAACCTTTGATCGAAC GAACGGCGTGAACACATTAGGAGCGATCAAAGAGCGATCGGGCAATGGCC TGCGACGCTCGCCCTGGCCAAAGGTTTCGGGGACCCACCGAAATCCACAA CGCCGAAGCAACCCGCTGACGGTGACGGTGACGGTGACGCCCCGCGAAAA AACAAGGCGAAGTCGTTGATGCCTCTGGCCGATGCCGCATCGAAACTCCT GCCCAAGGAGAGTGCAGACGGAAGCGTCAAGTTTTCGAATCCTGGGGTAG GGGACTTTCAAGTTTTTGACGCTCTCGTGAAGGTGAGAAAAGCCGCCGTC CATGCAATCCTTGAGCGCCACGCCGCTGTTGGCGCTAATCGGCTCCTCTG GGGGGGGGTTCGCTCGATGATTGAAAAAAATGCGCCGGATTTTTTTGGTC CCGAAGTTTCGCCAGGCAACGAAAGCATGCGCGGGTTGGCAGCTACTGCA CGTAGAACATAGTTTATTAGTGTAGGTGTAGGTGAAGGTAGTGAACTATT ATTCACGGTCGGCCAAACCTCGGCCAAGTCTTTTGTGTGTCGAACCTTCA CGTACCAGCTCAAGTCTGCATGCCTCGTGGAGGAGTCGACTGCGCGTCAG ATTAGAGACTACTGTACTATTAATAGACTACTATTATTGTACTATCATGG TTAGTACGCGTTCCCATGAGCAGGGTCTGCACGTCTTGGCACGCGTTATC TCGATCTTGACGACCACCTCCAGTACCCCGGCGCCTTCGAGCTGAAGATA ATCGGTGTAGACGACGAGAGCTTCGTCGGTGACATTCGAAACGTGGTGGC CGGGTGTCTCACCAAGGGGGAAGAGCATCTCCTCAAGTGCACCACTCGAG AGAAAGGAAAGTACGTCAGTATTTCGCTCAAGGTTTACGTGGAGAGCTCG ACGCAGCTGTACAAGGTGAGGCGTCGCTGGCCCTCTCGACCTACGGTACA TGTTTGTACAGTACCAGGTACCTGGTACTAAATAGACGTGCAAAATAGTT TAGTTTCGCCAGGATTCGGGGTTTCAACTACCTTGGATTACGTTGCGTGT GCTAACTGTGTGCTACCCGGGCCACGGGTATTGATTGATTGATTGATTGA ATTCTCACATAAGCTGATGTAAAAAAACCCAGCCCGTGGTCACAAGGTAG AACACACCATTCGGAAGGAAAGAACGTACGACGTACTCTCCATACAAAGA GAAAGCGGAAATGGTACAAGAAATACTCGATGATGGTATCATGGTTTCAT GATATGATGGAACTTACCTGATGGATGGTACAGTATATACACATGCACGA AAATATTCGTTTGGGTGGCGGAAACATGCACTCAGTATTAGCCTAGAAGT CTACTGCTATACATTTAGAAAGGGGTCGCTTCACGCGCAACAAAAAAATG GCGTTCGGGTACATACCTGGTTACGGAAAACCATTCCGAAATTCGAAAAT CGCCCCGAATGGGCTTTTGATCGAAATGTGCTCTGTAGGGAGGTCTTCGG GGAAAGCATCGGTACCATGCGTCCACAAGTGGTGAACTGAAAGCCGGCAT CGTTTATATCGTACCGGTACTTCGTATAATATTGGAGTACATACTATATT TTGTATATATTATCGATGAGGGGACCCAAGCCCTCATATCGTTGCGTCTG CCAGCAGAGCGCTATTAATTTGTGGCCACATGCTCCAAAGGAGTACATTT TGCCTCAACAGTTAGTATCACTTGGCATACATCGGCCACAATGTACCTGC CTATTCGTATCAAAAACTTGGGCACGCTTGTTGTGGGTCACTTGGCGGCC CTTGGGGTCAAGAGTTCGAGTCAGGCTGTGCTCTATAGCTAGCTCTATAG CGGAAGTGATAACAATCGGTGGCCGCCTTGACTTTGACCGGTTTTAGAGT TCAAGCTATTCAAGCTATTCGTATCGATTTCAAACCGCCCGACTGGGCCG AAACGCCATTACGACTATTTATAACTCCCAGCCTTAGAGCCTTCGAACGA TTCCCGAAAGAGAGGCGCTCATTATTTGGTCATAGTCCATTGTGCCCTGG AAAAAGGCAGCACCCGTTCGGAACTATCTTGAGGTTTACTGGCCCTGTGA CGGTGGACTCTCGGCAGTGAGCATCATCGGTACGCAATTGCGTGACCCGA TAAACTAGGCACTGATCCGATGGCGTATGGCGGCATAAATAAATAAATGG ACGCCGCCGCGGAAATCGAAAGTAATCTCTAAGTAAGCACCAGATTCAGC CTGAGAGCGGAGGTGAGCAGGTTAACGCAGGTTGGGACTGCCGAACCCGT CTCGCGGGACCAAATTCTCAGGCGCGAACGGAGACAGGGAAATTTTCATT TTCCTTGTTCAGCTGACCACGAGTACCACAGAGCAGGATTGGCAACCTTA CCCGTTTGATCTATACTGCTATAGGTGATGACCGTACATACATTTTCGTC CTCCCCCACACCCCCCCAAAAATAAATAAATCGGAAAATAGACTTTCGTG TTCCTACTTAACGGCCTTTAATGATGATGTATTCCCTTTTGTGTCATCCC CTCCCCCCGGCAGTGCTACGAAGTCATCAACGAAGATTCGCGAGTTAAGT TCAAGTTTTGAGTCGACTCTCAAGGCGCCTGGCGGTATAGAGCTATAAAG CATTAGACACAACCGACTCAAGGACGACGCAGACTCCCTCGCGGAGCCAT GCGAACAGCATGACTCATGACTCATGACTCTCACATGGCTCTCAAGACGA ACAAGGGCACGGGGAGCACTTTTTTTGAGCGTTAAGCCGGGGCGTTGTAG AAGGAGAACTCGTTGCACAGCGTCGGGGGGGGCACTGGAGTGACAGCAGG ACCAAACACACTTGGAAGGACTGTCAGTACTCGACGAGACTCTTTTGAGG TTGAGGGACAGGATGAGTCCACCGCTGCTGGTGTATTCTGATTGGCACGA AATAATTTTAGTGTATAGCAGTACCTCTCCAGACAGTACCTCTCCACGCA CTATTAATACCAGTAGTGTTTTCTAATTAGCTCTATTAAGAGTTG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig864:174804..182948-

>mRNA_F-serratus_M_contig864.20018.1 ID=mRNA_F-serratus_M_contig864.20018.1|Name=mRNA_F-serratus_M_contig864.20018.1|organism=Fucus serratus male|type=CDS|length=1230bp|location=Sequence derived from alignment at F-serratus_M_contig864:174804..182948- (Fucus serratus male)
ATGATGCAAAAGGGGCGAGCAGCTTCAGCGACCTTTCTCATGTTGAGCAC
TATTTCTCGGTCGGTACCTGCATTTCTTCTCAGGAGCGCGTCGCCGCGGG
TCGGCGTTGTCAGATGATGCAAAAGGGGCGAGCAGCTTCAGCGACCTTTC
TCATGTTGAGCACTATTTCTCGGTCGGTACCTGCATTTCTTCTCAGGAGC
GCGTCGCCGCGGGTCGGCGTTGTCAGGAGCGATCAAAGAGCGATCGGGCA
ATGGCCTGCGACGCTCGCCCTGGCCAAAGGTTTCGGGGACCCACCGAAAT
CCACAACGCCGAAGCAACCCGCTGACGGTGACGGTGACGGTGACGCCCCG
CGAAAAAACAAGGCGAAGTCGTTGATGCCTCTGGCCGATGCCGCATCGAA
ACTCCTGCCCAAGGAGAGTGCAGACGGAAGCGTCAAGTTTTCGAATCCTG
GGGTAGGGGACTTTCAAGTTTTTGACGCTCTCGTGAAGGAGCGATCAAAG
AGCGATCGGGCAATGGCCTGCGACGCTCGCCCTGGCCAAAGGTTTCGGGG
ACCCACCGAAATCCACAACGCCGAAGCAACCCGCTGACGGTGACGGTGAC
GGTGACGCCCCGCGAAAAAACAAGGCGAAGTCGTTGATGCCTCTGGCCGA
TGCCGCATCGAAACTCCTGCCCAAGGAGAGTGCAGACGGAAGCGTCAAGT
TTTCGAATCCTGGGGTAGGGGACTTTCAAGTTTTTGACGCTCTCGTGAAG
TACCCCGGCGCCTTCGAGCTGAAGATAATCGGTGTAGACGACGAGAGCTT
CGTCGGTGACATTCGAAACGTGGTGGCCGGGTGTCTCACCAAGGGGGAAG
AGCATCTCCTCAAGTGCACCACTCGAGAGAAAGGAAAGTACGTCAGTATT
TCGCTCAAGGTTTACGTGGAGAGCTCGACGCAGCTGTACAAGTACCCCGG
CGCCTTCGAGCTGAAGATAATCGGTGTAGACGACGAGAGCTTCGTCGGTG
ACATTCGAAACGTGGTGGCCGGGTGTCTCACCAAGGGGGAAGAGCATCTC
CTCAAGTGCACCACTCGAGAGAAAGGAAAGTACGTCAGTATTTCGCTCAA
GGTTTACGTGGAGAGCTCGACGCAGCTGTACAAGTGCTACGAAGTCATCA
ACGAAGATTCGCGAGTTAAGTTCAAGTTTTGATGCTACGAAGTCATCAAC
GAAGATTCGCGAGTTAAGTTCAAGTTTTGA
back to top