mRNA_F-serratus_M_contig863.20009.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig863.20009.1
Unique NamemRNA_F-serratus_M_contig863.20009.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig863.20009.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig863contigF-serratus_M_contig863:186518..188994 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size489
Cds size315
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig863.20009.1prot_F-serratus_M_contig863.20009.1Fucus serratus malepolypeptideF-serratus_M_contig863 186518..186832 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932533.631506-CDS-F-serratus_M_contig863:186517..1868321622932533.631506-CDS-F-serratus_M_contig863:186517..186832Fucus serratus maleCDSF-serratus_M_contig863 186518..186832 +
1690964353.4198525-CDS-F-serratus_M_contig863:186517..1868321690964353.4198525-CDS-F-serratus_M_contig863:186517..186832Fucus serratus maleCDSF-serratus_M_contig863 186518..186832 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932533.6435742-UTR-F-serratus_M_contig863:186832..1868591622932533.6435742-UTR-F-serratus_M_contig863:186832..186859Fucus serratus maleUTRF-serratus_M_contig863 186833..186859 +
1690964353.4309907-UTR-F-serratus_M_contig863:186832..1868591690964353.4309907-UTR-F-serratus_M_contig863:186832..186859Fucus serratus maleUTRF-serratus_M_contig863 186833..186859 +
1622932533.6573434-UTR-F-serratus_M_contig863:188848..1889941622932533.6573434-UTR-F-serratus_M_contig863:188848..188994Fucus serratus maleUTRF-serratus_M_contig863 188849..188994 +
1690964353.440914-UTR-F-serratus_M_contig863:188848..1889941690964353.440914-UTR-F-serratus_M_contig863:188848..188994Fucus serratus maleUTRF-serratus_M_contig863 188849..188994 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig863.20009.1

>prot_F-serratus_M_contig863.20009.1 ID=prot_F-serratus_M_contig863.20009.1|Name=mRNA_F-serratus_M_contig863.20009.1|organism=Fucus serratus male|type=polypeptide|length=105bp
RNRTTASYPIFRLVESSSLPCLHVEAKGQTPQCHRKHKLMFPNKSSIISA
QRRYICLQRRGRVDIKDVGISQVHTPRRRFFCRRHFRRRRCDVQATTAYG
DVRH*
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mRNA from alignment at F-serratus_M_contig863:186518..188994+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig863.20009.1 ID=mRNA_F-serratus_M_contig863.20009.1|Name=mRNA_F-serratus_M_contig863.20009.1|organism=Fucus serratus male|type=mRNA|length=2477bp|location=Sequence derived from alignment at F-serratus_M_contig863:186518..188994+ (Fucus serratus male)
CGAAATAGAACGACTGCTTCATATCCTATTTTCCGATTGGTGGAATCGTC
GAGTTTACCTTGTTTGCATGTTGAAGCGAAAGGCCAAACGCCGCAATGTC
ACCGGAAGCATAAATTGATGTTCCCAAACAAGAGCTCCATCATCAGCGCA
CAGAGGAGATACATTTGTCTGCAACGGCGGGGCCGGGTTGACATCAAAGA
CGTCGGCATCTCGCAGGTCCACACGCCCCGCCGAAGGTTCTTCTGTCGAC
GCCACTTTCGTCGAAGGCGCTGTGATGTCCAAGCAACGACCGCCTACGGG
GACGTTCGGCACTGAGAGTACTGCAGAGCTTCTCATCCGACGGTGAGTAT
TATACAAGGAATTGTTATTTTGTACTGTATATTGTGGTGCCTCCTGCATT
TCTAGTCTACAGTACGTTCGTTGGTGTGTGTTCGCCCGTCATTGCATGCA
CAGGACTTCTCACCCATCTTCCTTCTGCGATGCGTGCCTTAATTTTTCTT
GCGACATTCATCCATTCCTTTCCCTCGTCGACCGTGTGGTTGAATTTTGT
GTACTAACGATTTAACGGGACCCCACGCGTTTTTTTCCAAAACAAATATT
CGAAGATACTATAATGGAGTGACTACGAGCGTGTTTTGACTCAAAGTACA
ATTTTGGTATCAGTAATATGAGGTATTAACAACCACCTGTCCCTACCGCC
ACATGTTCCAAACGTAAGAGTGCATAGTCATGTGTCTTTGTTCAGTAGGA
AGTTTTGGACTTTGAAGGTCATGTACCGAGTTTCGGCGGCCGACTTTTTG
GTGGTTTTGTGTAAACCCGGGAATAATCCCACCGCGAATGTCACAGAAGG
TGTCTCCCTGACTACACATATGTAGACAACTTTCTTCGGCTGAGTGGCAT
GTAGAAGGTTATCCTCTTCGGAGGGTGCTTCAGCAGGGTTTTAGGAGGTC
TTCTGCGCAAAACCGCGGTCTCGGGGGCGATGTCAGGCTCAACAGCGGAG
AACCTACTGCTGTTCCTACTGCTGCTGCTGCAGCAGCTGTAGCAGGAGTA
CAGAAAAAAACACTGAAAAGTCGCTCGCCAAACCTCGCGTACATGACCTA
CGAAGCCCAAAATATCCTACTGAACAAAGACACATGACTATGCACTCTTA
CGTTTGGAACATGTGGCGGTAGGGACAGCTGGTTGCTCATACCTCATATT
GCTGGTACCAAGATTGTACTTTGAGGCAAAACACGCCCGTATTCACTCCA
TTACAGTAGTACCGACGATACTCTTGCACTTTGACTAATTGTTTTTGAAA
AAAACGCGTGGGGCCCCGTTAATTGTTCTCCACTTGTTGGGCATTTTTGT
TAAGTTTATAAGGCTGAATCCTTTTCACGAAAAAATTAAGGCACGCACCA
CAGATGGAATGTGGATGAGAAATCCTGTGTGGCCTTCCTCCTGTGTCACC
CCGGCTGGTACGTCCAACGGGCTTGATGTCCAGAATGAATGGGAAGAAAA
CACAAAACAATATTTTGGTTCCTTGTGGATGAGCCGTTGCGTTTGTGTGT
GTATGTTTGCGCCTTCTCTCTTTTGTATGCTTACAATATGCCCGCCGGCT
CCCTACGTGAAAGATTGATTCTGTCGCCTGGCTGCGGCTCCCTTCAGCTC
CTCTCTCTTCCAATCTCCAATGTCGCCGGCTGATTGCCGTCTGCGGGCTC
TCTTTTGAAGTTATCGTTCCCCAGGGCGCCGGTACTTTCAGCATGCCCCC
TTTATACCAATAGTGGGCATGGAGAAGAGAGGCGCATTTTAATTGGTCCA
TGTTGACCTGCCAAGGCAGCACTCGTTCGGAAATTCCTTGAGGTTTACTG
GCCCTTTGCCGGCGGACTCTCGGCAGCGAACGCCATCGATACGCAATTGC
GTGACCCGATAAACTCGAGACTGACCCGATGTCGTATGGCCGTTTAAAAT
AAATATATGGACGCCGCCACGGAACTCGGGAGGAATCCCGTGAGTAAGCA
CCGGATTCAGACTGAGTATGAAGATCAGCAGACTGACGCGGGACGGGGCT
GCCGAACCCGTCTCGCGAGACCAAATTCCTAGTCGCGAACGCGGACAGAG
CAATATATATTTTTTCCTGTTCAGCTGACCACGTGCGGGGTTGACAACCT
TACCCGGTTGATCCTTACTCTTGCTATATGCGTTACGATACACACACATG
TGCCTGGCAGAAAATACTATCCAGATGTGTAGTAATCAATAAAAATGGTG
ACTTTCTACGTTTTGGGTGGGGAAGCATTTCGTGTTGGTGTTGTGGCTTA
CTTTTTGTTTGTCCATTCCCGGCTTCGGCAGGTCCCCAAGGCATCTCCTA
CGATCAAGTCCTCATGGAGAACAGCGGCACGTACGATTCCTCGAGAAGGA
TGAGCCGATACTAATCGCTTGGGACTCAACCTTGGGGATGTACGACCCTT
GTGGCGGAAGTCCGCCGCATGGTGGCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig863:186518..188994+

>mRNA_F-serratus_M_contig863.20009.1 ID=mRNA_F-serratus_M_contig863.20009.1|Name=mRNA_F-serratus_M_contig863.20009.1|organism=Fucus serratus male|type=CDS|length=630bp|location=Sequence derived from alignment at F-serratus_M_contig863:186518..188994+ (Fucus serratus male)
CGAAATAGAACGACTGCTTCATATCCTATTTTCCGATTGGTGGAATCGTC
GAGTTTACCTTGTTTGCATGTTGAAGCGAAAGGCCAAACGCCGCAATGTC
ACCGGAAGCATAAATTGATGTTCCCAAACAAGAGCTCCATCATCAGCGCA
CAGAGGAGATACATTTGTCTGCAACGGCGGGGCCGGGTTGACATCAAAGA
CGTCGGCATCTCGCAGGTCCACACGCCCCGCCGAAGGTTCTTCTGTCGAC
GCCACTTTCGTCGAAGGCGCTGTGATGTCCAAGCAACGACCGCCTACGGG
GACGTTCGGCACTGACGAAATAGAACGACTGCTTCATATCCTATTTTCCG
ATTGGTGGAATCGTCGAGTTTACCTTGTTTGCATGTTGAAGCGAAAGGCC
AAACGCCGCAATGTCACCGGAAGCATAAATTGATGTTCCCAAACAAGAGC
TCCATCATCAGCGCACAGAGGAGATACATTTGTCTGCAACGGCGGGGCCG
GGTTGACATCAAAGACGTCGGCATCTCGCAGGTCCACACGCCCCGCCGAA
GGTTCTTCTGTCGACGCCACTTTCGTCGAAGGCGCTGTGATGTCCAAGCA
ACGACCGCCTACGGGGACGTTCGGCACTGA
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