mRNA_F-serratus_M_contig862.20008.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig862.20008.1
Unique NamemRNA_F-serratus_M_contig862.20008.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig862.20008.1 vs. uniprot
Match: A0A6H5JMH2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMH2_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 8.300e-31
Identity = 61/100 (61.00%), Postives = 73/100 (73.00%), Query Frame = 3 
Query:  177 WSTTGDNRGCETRRQLPLALC*SIKMHKSQGQTLDKAVVDLGRPEATAGLTFVCLSRAKRLTDLLIEPMTFERLSKLGEKPTLRLRLREEERLRALPGET 476
            WST   + G + R QLPL LC +I MHKSQGQTL KAV+DLG  EA  GLTFVCLSRAKRL DL++EPM+F+R+  LG  PT++ RL+EE RL  L   T
Sbjct:   67 WSTGRKDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQST 166
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BLAST of mRNA_F-serratus_M_contig862.20008.1 vs. uniprot
Match: A0A6H5KSF1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSF1_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 1.500e-30
Identity = 59/96 (61.46%), Postives = 72/96 (75.00%), Query Frame = 3 
Query:  189 GDNRGCETRRQLPLALC*SIKMHKSQGQTLDKAVVDLGRPEATAGLTFVCLSRAKRLTDLLIEPMTFERLSKLGEKPTLRLRLREEERLRALPGET 476
            G++ G + R QLPL LC +I MHKSQGQTL KAV+DLG  EA  GLTFVCLSRAKRL DL++EPM+F+R+  LG  PT++ RL+EE RL  L   T
Sbjct:    7 GEDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQST 102
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BLAST of mRNA_F-serratus_M_contig862.20008.1 vs. uniprot
Match: A0A6H5KCP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCP5_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 6.310e-30
Identity = 59/97 (60.82%), Postives = 73/97 (75.26%), Query Frame = 3 
Query:  186 TGDNRGCETRRQLPLALC*SIKMHKSQGQTLDKAVVDLGRPEATAGLTFVCLSRAKRLTDLLIEPMTFERLSKLGEKPTLRLRLREEERLRALPGET 476
            +G++ G + R QLPL LC +I MHKSQGQTL KAV+DLG  EA  GLTFVCLSRAKRL DL++EPM+F+R+  LG  PT++ RL+EE RL  L   T
Sbjct:    4 SGEDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQST 100
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BLAST of mRNA_F-serratus_M_contig862.20008.1 vs. uniprot
Match: A0A6H5KFN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFN2_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 6.120e-29
Identity = 55/87 (63.22%), Postives = 69/87 (79.31%), Query Frame = 3 
Query:  186 TGDNRGCETRRQLPLALC*SIKMHKSQGQTLDKAVVDLGRPEATAGLTFVCLSRAKRLTDLLIEPMTFERLSKLGEKPTLRLRLREE 446
            +G++ G + R QLPL LC +I MHKSQGQTL KAV+DLG  EA  GLTFVCLSRAKRL DL++EPM+F+R+  LG  PT++ RL+EE
Sbjct:    4 SGEDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEE 90
[Close]
BLAST of mRNA_F-serratus_M_contig862.20008.1 vs. uniprot
Match: A0A6H5KN08_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN08_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 1.120e-28
Identity = 59/97 (60.82%), Postives = 73/97 (75.26%), Query Frame = 3 
Query:  186 TGDNRGCETRRQLPLALC*SIKMHKSQGQTLDKAVVDLGRPEATAGLTFVCLSRAKRLTDLLIEPMTFERLSKLGEKPTLRLRLREEERLRALPGET 476
            +G++ G + R QLPL LC +I MHKSQGQTL KAV+DLG  EA  GLTFVCLSRAKRL DL++EPM+F+R+  LG  PT++ RL+EE RL  L   T
Sbjct:    4 SGEDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQST 100
[Close]
BLAST of mRNA_F-serratus_M_contig862.20008.1 vs. uniprot
Match: A0A6H5JUS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS2_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 1.270e-28
Identity = 60/98 (61.22%), Postives = 72/98 (73.47%), Query Frame = 3 
Query:  183 TTGDNRGCETRRQLPLALC*SIKMHKSQGQTLDKAVVDLGRPEATAGLTFVCLSRAKRLTDLLIEPMTFERLSKLGEKPTLRLRLREEERLRALPGET 476
            TT  + G + R QLPL LC +I MHKSQGQTL KAV+DLG  EA  GLTFVCLSRAKRL DL++EPM+F+R+  LG  PT++ RL+EE RL  L   T
Sbjct:  176 TTWQDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQST 273
[Close]
BLAST of mRNA_F-serratus_M_contig862.20008.1 vs. uniprot
Match: A0A6H5JFG8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG8_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 1.920e-27
Identity = 60/98 (61.22%), Postives = 72/98 (73.47%), Query Frame = 3 
Query:  183 TTGDNRGCETRRQLPLALC*SIKMHKSQGQTLDKAVVDLGRPEATAGLTFVCLSRAKRLTDLLIEPMTFERLSKLGEKPTLRLRLREEERLRALPGET 476
            TT  + G + R QLPL LC +I MHKSQGQTL KAV+DLG  EA  GLTFVCLSRAKRL DL++EPM+F+R+  LG  PT++ RL+EE RL  L   T
Sbjct:  350 TTWQDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQST 447
[Close]
BLAST of mRNA_F-serratus_M_contig862.20008.1 vs. uniprot
Match: A0A6H5K4U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4U7_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 2.310e-27
Identity = 60/98 (61.22%), Postives = 72/98 (73.47%), Query Frame = 3 
Query:  183 TTGDNRGCETRRQLPLALC*SIKMHKSQGQTLDKAVVDLGRPEATAGLTFVCLSRAKRLTDLLIEPMTFERLSKLGEKPTLRLRLREEERLRALPGET 476
            TT  + G + R QLPL LC +I MHKSQGQTL KAV+DLG  EA  GLTFVCLSRAKRL DL++EPM+F+R+  LG  PT++ RL+EE RL  L   T
Sbjct:   67 TTWQDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQST 164
[Close]
BLAST of mRNA_F-serratus_M_contig862.20008.1 vs. uniprot
Match: A0A6H5K214_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K214_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 1.180e-26
Identity = 57/92 (61.96%), Postives = 68/92 (73.91%), Query Frame = 3 
Query:  201 GCETRRQLPLALC*SIKMHKSQGQTLDKAVVDLGRPEATAGLTFVCLSRAKRLTDLLIEPMTFERLSKLGEKPTLRLRLREEERLRALPGET 476
            G + R QLPL LC +I MHKSQGQTL KAV+DLG  EA  GLTFVCLSRAKRL DL++EPM+F+R+  LG   T++ RL+EE RL  L   T
Sbjct:    6 GTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLIVEPMSFDRIGNLGNSSTMKGRLQEEVRLGELARTT 97
[Close]
BLAST of mRNA_F-serratus_M_contig862.20008.1 vs. uniprot
Match: A0A6H5J8Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8Y8_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 2.240e-26
Identity = 59/100 (59.00%), Postives = 72/100 (72.00%), Query Frame = 3 
Query:  177 WSTTGDNRGCETRRQLPLALC*SIKMHKSQGQTLDKAVVDLGRPEATAGLTFVCLSRAKRLTDLLIEPMTFERLSKLGEKPTLRLRLREEERLRALPGET 476
            +   G + G + R QLPL LC +I MHKSQGQTL KAV+DLG  EA  GLTFVCLSRAKRL DL++EPM+F+R+  LG  PT++ RL+EE RL  L   T
Sbjct:  344 YQQVGLDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQST 443
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig862.20008.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JMH2_9PHAE8.300e-3161.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSF1_9PHAE1.500e-3061.46Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCP5_9PHAE6.310e-3060.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFN2_9PHAE6.120e-2963.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KN08_9PHAE1.120e-2860.82Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JUS2_9PHAE1.270e-2861.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFG8_9PHAE1.920e-2761.22Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K4U7_9PHAE2.310e-2761.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K214_9PHAE1.180e-2661.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J8Y8_9PHAE2.240e-2659.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig862contigF-serratus_M_contig862:348471..349250 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score64.7
Seed ortholog evalue2.4e-08
Seed eggNOG ortholog588596.U9U7T2
Hectar predicted targeting categoryother localisation
EggNOG OGs2D017@1,2SCDQ@2759,3AE97@33154
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons2
Model size767
Cds size252
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig862.20008.1prot_F-serratus_M_contig862.20008.1Fucus serratus malepolypeptideF-serratus_M_contig862 348722..348973 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932533.522445-UTR-F-serratus_M_contig862:348470..3487211622932533.522445-UTR-F-serratus_M_contig862:348470..348721Fucus serratus maleUTRF-serratus_M_contig862 348471..348721 +
1690964353.369675-UTR-F-serratus_M_contig862:348470..3487211690964353.369675-UTR-F-serratus_M_contig862:348470..348721Fucus serratus maleUTRF-serratus_M_contig862 348471..348721 +
1622932533.556242-UTR-F-serratus_M_contig862:348973..3490151622932533.556242-UTR-F-serratus_M_contig862:348973..349015Fucus serratus maleUTRF-serratus_M_contig862 348974..349015 +
1690964353.393983-UTR-F-serratus_M_contig862:348973..3490151690964353.393983-UTR-F-serratus_M_contig862:348973..349015Fucus serratus maleUTRF-serratus_M_contig862 348974..349015 +
1622932533.5808456-UTR-F-serratus_M_contig862:349028..3492501622932533.5808456-UTR-F-serratus_M_contig862:349028..349250Fucus serratus maleUTRF-serratus_M_contig862 349029..349250 +
1690964353.4071395-UTR-F-serratus_M_contig862:349028..3492501690964353.4071395-UTR-F-serratus_M_contig862:349028..349250Fucus serratus maleUTRF-serratus_M_contig862 349029..349250 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932533.539646-CDS-F-serratus_M_contig862:348721..3489731622932533.539646-CDS-F-serratus_M_contig862:348721..348973Fucus serratus maleCDSF-serratus_M_contig862 348722..348973 +
1690964353.3811407-CDS-F-serratus_M_contig862:348721..3489731690964353.3811407-CDS-F-serratus_M_contig862:348721..348973Fucus serratus maleCDSF-serratus_M_contig862 348722..348973 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig862.20008.1

>prot_F-serratus_M_contig862.20008.1 ID=prot_F-serratus_M_contig862.20008.1|Name=mRNA_F-serratus_M_contig862.20008.1|organism=Fucus serratus male|type=polypeptide|length=84bp
MHKSQGQTLDKAVVDLGRPEATAGLTFVCLSRAKRLTDLLIEPMTFERLS
KLGEKPTLRLRLREEERLRALPGETLHHHGGVA*
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mRNA from alignment at F-serratus_M_contig862:348471..349250+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig862.20008.1 ID=mRNA_F-serratus_M_contig862.20008.1|Name=mRNA_F-serratus_M_contig862.20008.1|organism=Fucus serratus male|type=mRNA|length=780bp|location=Sequence derived from alignment at F-serratus_M_contig862:348471..349250+ (Fucus serratus male)
GCACAGCAAAATGCTATGTATAAGGACGGTTATCTGCGCGCCTTCGACCC
CGCAAGACCTCTGCATTTAGAGTCGTGGGTGCAGCTTGATATGCACAAGG
GTTTCGCCGTCGAGCTTCaAAAGCTGCGACCCGGACGTTGTCCATTCTGT
GGGGAGAGGTGGCCTTTGAGACGTCCTGGAGTACAACGGGTGACAATAGA
GGATGCGAGACACGTCGTCAATTACCCCTGGCTCTTTGTTGATCTATAAA
AATGCACAAGAGCCAAGGGCAGACGTTGGACAAGGCCGTTGTCGACCTCG
GACGGCCCGAGGCTACAGCGGGATTGACGTTCGTGTGTCTTAGCCGCGCA
AAGCGCCTAACGGATCTTTTAATAGAGCCCATGACATTCGAGAGGCTTTC
AAAACTCGGCGAGAAACCGACATTGCGACTTCGGCTACGAGAAGAAGAGC
GCCTTCGAGCTCTCCCGGGGGAAACGCTACACCACCACGGGGGTGTTGCG
TAATGCATGTCAGTTTTCCGGTGACAATTCGTGTGGGAAGATCAACACCA
CATTAAACCAACACCTGTGTTCAGCTGACGATAGTTACCAAACTATCCTT
TAGCGAGCGTATAGCGATAGCTACCCTATATTTATTACATATCGTCAATC
TTCTGTCTCCGGACTAGTATTGTTTTCTTTTCATTATTTTTTCTTCATCT
TTCTCCATCCTTCCGTGCCTTGATAGTCTCAACATTTCTGTAACCGAGAA
TATCAATACTAACTATTAATACCGTCGTCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig862:348471..349250+

>mRNA_F-serratus_M_contig862.20008.1 ID=mRNA_F-serratus_M_contig862.20008.1|Name=mRNA_F-serratus_M_contig862.20008.1|organism=Fucus serratus male|type=CDS|length=504bp|location=Sequence derived from alignment at F-serratus_M_contig862:348471..349250+ (Fucus serratus male)
ATGCACAAGAGCCAAGGGCAGACGTTGGACAAGGCCGTTGTCGACCTCGG
ACGGCCCGAGGCTACAGCGGGATTGACGTTCGTGTGTCTTAGCCGCGCAA
AGCGCCTAACGGATCTTTTAATAGAGCCCATGACATTCGAGAGGCTTTCA
AAACTCGGCGAGAAACCGACATTGCGACTTCGGCTACGAGAAGAAGAGCG
CCTTCGAGCTCTCCCGGGGGAAACGCTACACCACCACGGGGGTGTTGCGT
AAATGCACAAGAGCCAAGGGCAGACGTTGGACAAGGCCGTTGTCGACCTC
GGACGGCCCGAGGCTACAGCGGGATTGACGTTCGTGTGTCTTAGCCGCGC
AAAGCGCCTAACGGATCTTTTAATAGAGCCCATGACATTCGAGAGGCTTT
CAAAACTCGGCGAGAAACCGACATTGCGACTTCGGCTACGAGAAGAAGAG
CGCCTTCGAGCTCTCCCGGGGGAAACGCTACACCACCACGGGGGTGTTGC
GTAA
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