mRNA_F-serratus_M_contig862.20006.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig862.20006.1
Unique NamemRNA_F-serratus_M_contig862.20006.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig862.20006.1 vs. uniprot
Match: D8LRM4_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM4_ECTSI)

HSP 1 Score: 541 bits (1393), Expect = 5.160e-179
Identity = 278/455 (61.10%), Postives = 332/455 (72.97%), Query Frame = 1
Query:   88 EDGGCGTMTDLYQSRVEKDGWTPKGPIYILDDNDDIMYSPTSVTGKWLLTSQLFVLRGSVFYCRGTSIGGDCDELRIQSTGSTDFHEVRGHGGSLYFEKTLVTSWDTPNKSPQEDYEGGRSFINCVSEYESDETCEGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGGSQAAGIFLHRSSDSCEVYDNNVHDMQDAGMAILESFDADIHDNSFTNVKYGIRISLGGGNNNVYDNVFDQCSTYGLYTYQGSDAP-EASSDGRPSDNSFYDNTISNTETGVKIKEGDNTIITGNTFTGTSLLEFNDAEDTVWTSNTFEDADSDLCYKNIAS--------STFESIDGTIPSL 1425
            E  GC T+TDLY  R+E DG + KGPI+ LDD+ + + +P  ++ KWLLT++L +  G+VFYCRG+SIGGDCDELRIQSTG TDFHEVR HGGS+YFE T+VTSWDTPNK+PQ  Y GGRSF+NCVSE  + E C GQ +N+ GECRMDII+SE+GYLG+FDSESYGLTWKVRGFC D SNP+VFDTTNVYG++  SDIHH YYG YSYGHQGGVW NN+MHDNHQYGFDPHDDSDYLT                               +GG  AAGIFLHRSSD   V+DN VHDMQDAGMA+LES +ADI++N F++VK+GIR+SLG   N+V++N+F+  ST GLYTYQGSD P +  SDGRPSDN F +N I N   GVKIKEGD+T+IT N FTGTS LEF DA++T W  NT       +C KNI S        STF+     +P+L
Sbjct:   83 EGEGCFTITDLYNFRLESDG-SAKGPIFNLDDSYNTVLNPKVLSNKWLLTAELHITGGAVFYCRGSSIGGDCDELRIQSTGPTDFHEVRAHGGSMYFESTIVTSWDTPNKTPQATYVGGRSFLNCVSEKLTGEVCVGQAQNEMGECRMDIINSEIGYLGYFDSESYGLTWKVRGFCKDLSNPDVFDTTNVYGNLIGSDIHHNYYGQYSYGHQGGVWHNNQMHDNHQYGFDPHDDSDYLTSIIASKRCNNVQIYNNEVY------------DGGPFAAGIFLHRSSDYAIVHDNVVHDMQDAGMAMLESMNADIYNNRFSSVKFGIRLSLGSSENHVHENLFEDVSTQGLYTYQGSDEPTDGVSDGRPSDNLFENNRILNVTKGVKIKEGDDTVITDNVFTGTSELEFFDAQNTRWKGNTLPQG---VCIKNIHSDDGIDIELSTFDRRTAGLPTL 521          
BLAST of mRNA_F-serratus_M_contig862.20006.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI)

HSP 1 Score: 530 bits (1364), Expect = 1.030e-169
Identity = 258/439 (58.77%), Postives = 311/439 (70.84%), Query Frame = 1
Query:   34 KASIRWASGTGINGRMYLEDGGCGTMTDLYQSRVEKDGWTPKGPIYILDDNDDIMYSPTSVTGKWLLTSQLFVLRGSVFYCRGTSIGGDCDELRIQSTGSTDFHEVRGHGGSLYFEKTLVTSWDTPNKSPQEDYEGGRSFINCVSEYESDETCEGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGGSQAAGIFLHRSSDSCEVYDNNVHDMQDAGMAILESFDADIHDNSFTNVKYGIRISLGGGNNNVYDNVFDQCSTYGLYTYQGSDAPEASSDGRPSDNSFYDNTISNTETGVKIKEGDNTIITGNTFTGTSLLEFNDAEDTVWTSNTFED 1350
            + S R+A+ +G+ GR+Y E  GC TMTDLY  R  ++  + KGP+Y+LDD+   +  P+ +T  WLL ++L++  G VFYC+GTS GGDC++LRIQSTGS DFHEVRGHGGSLYFE T+VTSWDTPNK PQE YE GRSF+NCVSE  + + CEG  KN+ GECRMDII+SE+ YLG+FDSESYG+TWKVRGFC D SNPEVF+ TNVYGD+  SDIHH+YYG YSYGHQGGVWTNNKMHDN QYGFDPHDDSDYLTIA                             +GG+ AAGIFLHRSSD   V+DN + +MQDAG+A+LESFDA I+ N     KYGIR+SLG GNN VY N F   S YGLYTY+GSD P+ S DGRPS N    N + +   GVKIKEGD+     NTF      EF ++ +T+W+ N   D
Sbjct:  427 RPSFRYAASSGVAGRLYAEGEGCFTMTDLYNFRGTENDGSSKGPVYMLDDDGTKLDIPSGITNNWLLAAELYITGGGVFYCKGTSAGGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYENGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKVRGFCKDLSNPEVFELTNVYGDLTGSDIHHLYYGHYSYGHQGGVWTNNKMHDNWQYGFDPHDDSDYLTIAYNEVYNNVNHGIIASKRCNNVKIFENEVRDGGAAAAGIFLHRSSDGAAVFDNTITNMQDAGIAMLESFDAQIYGNIINGAKYGIRMSLGSGNNEVYQNSFTDISQYGLYTYEGSDEPDVS-DGRPSGNVLALNLVEDCPIGVKIKEGDDNEFYQNTFINVDAFEFPESTNTMWSGNDIGD 864          
BLAST of mRNA_F-serratus_M_contig862.20006.1 vs. uniprot
Match: A0A6H5JGU8_9PHAE (MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU8_9PHAE)

HSP 1 Score: 505 bits (1300), Expect = 5.340e-166
Identity = 259/462 (56.06%), Postives = 316/462 (68.40%), Query Frame = 1
Query:   88 EDGGCGTMTDLYQSRVEKDGWTPKGPIYILDDNDDIMYSPTSVTGKWLLTSQLFVLRGSVFYCRGTSIGGDCDELRIQSTGSTDFHEVRGHGGSLYFEKTLVTSWDTPNKSPQEDYEGGRSFINCVSEYESDETCEGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVR---------GFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGGSQAAGIFLHRSSDSCEVYDNNVHDMQDAGMAILESFDADIHDNSFTNVKYGIRISLGGGNNNVYDNVFDQCSTYGLYTYQGSDAPEASSDGRPSDNSFYDNTISNTETGVKIKEGDNTIITGNTFTGTSLLEFNDAEDTVWTSNTFEDADSDLCYKNIAS--------STFESIDGTIPS 1422
            E  GC T+TDLY  R  ++  + KGP+Y+LD +   + +PTSVT KWLL ++L+V  G++FYC G+  GGDCDELRIQSTG  D++EVRGHGGS+YF  T+VTSWDTPNK PQE YEGGRSF+NCVSE  + ETC+G  KND GECRMDII+SEMGY+G+FDSESYGLTWKVR         GFC D SNP+VF+TTNVYGDIKNSDIHHMYYG YSYGHQGGVWTNN+MHDNHQY            +A                             +GG  A GIFLHRSSD+ EVY N + +M DAG+A+LESF+ADIHDN    V++GIR+SLG G N+VYDN F+ CS +GLYTY GSD P+ S+ GRP+ N+F +N ++N+  GVK K  DN ++T N FTGT  LEF DA+ T W+ N+     S +C  NI S        STF S  G +PS
Sbjct:   18 ESEGCFTLTDLYNFRGTENDGSSKGPLYMLDGSGSKITAPTSVTKKWLLEAELYVTNGAIFYCIGSEEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKQPQETYEGGRSFLNCVSEKLTGETCDGMAKNDMGECRMDIINSEMGYMGFFDSESYGLTWKVRRQAGRGVVRGFCKDLSNPDVFETTNVYGDIKNSDIHHMYYGHYSYGHQGGVWTNNEMHDNHQY------------VANNKVYNNYNHGIIASKRCNNVKIYDNQVSDGGPDAVGIFLHRSSDNAEVYGNKIWNMPDAGIALLESFNADIHDNEIDGVQFGIRMSLGSGGNSVYDNEFNDCSDWGLYTYMGSDEPDVSN-GRPNGNTFNNNKVTNSAGGVKFKNSDNIVVTNNEFTGTEELEFYDAQATTWSGNSLP---SGVCIDNITSDDGNSVPPSTFSSSSG-VPS 462          
BLAST of mRNA_F-serratus_M_contig862.20006.1 vs. uniprot
Match: D7FRR8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR8_ECTSI)

HSP 1 Score: 481 bits (1238), Expect = 4.940e-157
Identity = 246/449 (54.79%), Postives = 304/449 (67.71%), Query Frame = 1
Query:   88 EDGGCGTMTDLYQSRVEKDGWTPKGPIYILDDNDDIMYSPTSVTGKWLLTSQLFVLRGSVFYCRGTSIGGDCDELRIQSTGSTDFHEVRGHGGSLYFEKTLVTSWDTPNKSPQEDYEGGRSFINCVSEY-ESDETCEGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGGSQAAGIFLHRSSDSCEVYDNNVHDMQDAGMAILESFDADIHDNSFTNVKYGIRISLGGGNNNVYDNVFDQCSTYGLYTYQGSDAPEASSDGRPSDNSFYDNTISNTETGVKIKEGDNTIITGNTFTGTSLLEFNDAEDTVWTSNTFEDADSDLCYKNIAS-STFESIDGTIPSLC 1428
            + GGC T++DLY  +   +    KGP+++LD ND +  + T+ TGKWLLT+ LFV  G+  YCRG  +GG+C ELRI+ST  +DF E+RGHGG+LYFE T+VTSWD   + PQE Y+ GRSFI CVSE    ++TC     N+ GECRMDIIDSEMGYLG+  SE+YG+TWKVRGFC+D SNP+VFD  NVYGD+K SDIHHMYYGMYS+GHQGGVWTNN MHDNHQYGFDPHDDSDYL IA                             +GG+ AAGIFLHRS D  EVY N + +M DAG+A+LE+   DIHDN     ++GIR+ LG  NN V+DNVF      G++TY GSD P     GRP DN FY+NTI  TETGVKIKE DN  IT N F+GT+ +EFN+A D VW+ N+     ++ C ++I + STF    G +P  C
Sbjct:    7 DGGGCFTLSDLYAWQGFYNNGNSKGPVFVLDSNDRVDETATTTTGKWLLTADLFVTGGATLYCRGKGVGGNCAELRIRSTSGSDFFEIRGHGGNLYFEDTIVTSWDVDGRKPQETYKDGRSFIRCVSEVLTGEDTC---AINNMGECRMDIIDSEMGYLGYDASEAYGITWKVRGFCSDLSNPDVFDDVNVYGDMKGSDIHHMYYGMYSFGHQGGVWTNNLMHDNHQYGFDPHDDSDYLIIAGNKVYNNVNHGIIASKRCNNVKIYDNEVYDGGADAAGIFLHRSGDDSEVYGNTITNMGDAGIAMLETSGCDIHDNQVDGGEFGIRVHLGSSNNKVHDNVFKNIWNVGMFTYVGSDEPWVGG-GRPCDNEFYNNTIQATETGVKIKESDNISITNNAFSGTTEIEFNNAIDIVWSGNSIP---TNTCLEDIDNNSTFTGSSG-LPLEC 447          
BLAST of mRNA_F-serratus_M_contig862.20006.1 vs. uniprot
Match: A0A6H5KWQ2_9PHAE (MEP2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ2_9PHAE)

HSP 1 Score: 436 bits (1120), Expect = 7.000e-141
Identity = 214/347 (61.67%), Postives = 250/347 (72.05%), Query Frame = 1
Query:  109 MTDLYQSR-VEKDGWTPKGPIYILDDNDDIMYSPTSVTGKWLLTSQLFVLRGSVFYCRGTSIGGDCDELRIQSTGSTDFHEVRGHGGSLYFEKTLVTSWDTPNKSPQEDYEGGRSFINCVSEYESDETCEGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWK--------VRGFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGGSQAAGIFLHRSSDSCEVYDNNVHDMQDAGMAILESFDADIHDNSFTNVKYGIRISLGGGNNNVYDNVFDQCS 1122
            MTDLY  R  EKDG + KGP+Y+LDD+   +  P+ +T  WLL ++L++  G VFYC+GTS GGDC++LRIQSTGS DFHEVRGHGGSLYFE T+VTSWDTPNK PQE YEGGRSF+NCVSE  + + CEG  KN+ GECRMDII+SE+ YLG+FDSESYG+TWK        VRGFC D SNPEVFD TNVYGD+  SDIHH+YYG YSYGHQGGVWTNNKMHDN QYGFDPHDDSDYLT                               +GG+ A GIFLHRSSD   V+DN + +MQDAG+A+LE+FDA I+ N+    KYGIR+SLG GNN VY N F   S
Sbjct:    1 MTDLYNFRGTEKDG-SSKGPVYMLDDDGTKLDIPSGITNNWLLAAELYITGGGVFYCKGTSAGGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYEGGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKARLTRGFPVRGFCKDLSNPEVFDLTNVYGDLIGSDIHHLYYGHYSYGHQGGVWTNNKMHDNWQYGFDPHDDSDYLTRIIASKRCNNVKIFENEVR------------DGGAAAVGIFLHRSSDDAAVFDNTITNMQDAGIALLEAFDAQIYGNTINGAKYGIRMSLGSGNNVVYQNSFTDIS 334          
BLAST of mRNA_F-serratus_M_contig862.20006.1 vs. uniprot
Match: D7FIU4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU4_ECTSI)

HSP 1 Score: 422 bits (1085), Expect = 1.620e-135
Identity = 239/425 (56.24%), Postives = 281/425 (66.12%), Query Frame = 1
Query:  172 ILDDNDDIMYSPTSVTGKWLLTSQLFVLRGSVFYCRGTSIGGDCDELRIQSTGSTDFHEVRGHGGSLYFEKTLVTSWDTPNKSPQEDYEGGRSFINCVSEYESDETCEGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGGSQAAGIFLHRSSDSCEVYDNNVHDMQDAGMAILESFDADIHDNSFTNVKYGIRISLGGGNNNVYDNVFDQCSTYGLYTYQGSDAPEASSDGRPSDNSFYDNTISNTETGVKIKEGDNTIITGNTFTGTSLLEFNDAEDTVWTSNTFEDADSDLCYKNIAS--------STFESIDGTIPS 1422
            +LDD+ + + SPTSVT KWLL S+L+V  G++FYC G+  GGDCDELRIQSTG  D++EVRGHGGS+YF  T+VTSWDTPNK PQE YEGGRSF+NCVSE  + ETC+G+ KND GECRMDII+SEMGY+G+FD+ESYGLTWKVRGFC D SNP+VF+TTNVYGDIKNS+IHHMYYGMYSYGHQGGVWTNN+MHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXX                +GG +A GIFLHRSSD+ EVY                                                        G       DAP+ S+ GRP+ N+F +N I+NT  GVKIK  DN +I+ N FTGT  LEF DA+ T W+ N+     S +C  N+ S        STF S  G +PS
Sbjct:    1 MLDDSGNKITSPTSVTKKWLLESELYVTDGAIFYCIGSEEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKKPQETYEGGRSFLNCVSEKLTGETCDGKAKNDEGECRMDIINSEMGYMGFFDAESYGLTWKVRGFCKDLSNPDVFETTNVYGDIKNSNIHHMYYGMYSYGHQGGVWTNNEMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXASKRCNNVQIYNNEVSDGGPEAVGIFLHRSSDNAEVYG-------------------------------------------------------GXXXXXXXDAPDVSN-GRPNGNTFNNNKITNTAGGVKIKNSDNIVISNNDFTGTEELEFFDAQATTWSDNSLP---SGVCIDNVTSDDGNSVPPSTFSSSSG-VPS 365          
BLAST of mRNA_F-serratus_M_contig862.20006.1 vs. uniprot
Match: A0A6H5JNF5_9PHAE (MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF5_9PHAE)

HSP 1 Score: 423 bits (1088), Expect = 1.210e-129
Identity = 229/459 (49.89%), Postives = 289/459 (62.96%), Query Frame = 1
Query:   73 GRMYLEDGGCGTMTDLYQSRVEKDGWTPKGPIYILDDNDDIMYSPTSVTGKWLLTSQLFVLRGSVFYCRGTSIGGDCDELRIQSTGSTDFHEVRGHGGSLYFEKTLVTSWDTPNKSPQEDYEGGRSFINCVSEYESD--ETCEGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGGSQAAGIFLHRSSDSCEVYDNNVHDMQDAGMAILESFDADIHDNSFTNVKYGIRISLGGGNNNVYDNVFDQCSTYGLYTYQGSDAPEASSD--GRPSDNSFYDNTISNTETGVKIKEGDNTIITGNTFTGTSLLE---FNDAEDTVWTSNTFEDADSDLCYKNIASSTFESIDGTIPSLC 1428
            G+ Y+  GGC T+TD+Y ++    G    GP+++LD ND+++    S TG WLL   + V  GS+    G   GGD   LRIQSTGS D++E+RGHGGSL F  T VTSWDT  K    +Y+  RSFI CVSE  +D  +TC+G   N  GECRMDII SEMG +G+  +ESYG++WKVRG+C++  NPEVF+ T V GDI +SDI+ MYYG YS+GH GG+WT NKMHDN QYGFDPHDDSD L IA                             +GG  A GIFLHRSSD CEV+ N V+DM+DAGMAI+ES  A IHDN+FTNVKYGIR+S+G   N V +N F +C  YG+YTYQG+D PEAS D  G   DN+F+ NT+   E GVKI++ +  + T N F   S  E   F D ED VWT+N   D   D+C K   +  +     ++P LC
Sbjct:  398 GKNYIRGGGCATLTDIYTAQG---GHNDDGPLFVLDSNDNVVGG--SPTGYWLLMRDIHVEEGSLLQVHGPDAGGDARVLRIQSTGSRDYYEIRGHGGSLSFMDTKVTSWDTDEKKVNTNYKKERSFIRCVSEELADKPDTCDGHAVNHMGECRMDIIRSEMGEMGYDAAESYGISWKVRGYCSEDPNPEVFERTRVRGDIIDSDIYGMYYGHYSFGHDGGIWTGNKMHDNAQYGFDPHDDSDNLEIAYNTVWGNGNHGIIASKRCNNVKIHHNTVYDGGEGAVGIFLHRSSDDCEVWGNTVYDMKDAGMAIMESMGAHIHDNTFTNVKYGIRLSVGAARNIVENNSFLECDQYGIYTYQGNDKPEASKDWDGLLVDNTFHANTV---EGGVKIQKAEGIVFTDNNFYEHSSGEEYRFEDCEDVVWTNNRVPD---DICLKGDKNIDYMKSYDSLPDLC 845          
BLAST of mRNA_F-serratus_M_contig862.20006.1 vs. uniprot
Match: D7G8D9_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8D9_ECTSI)

HSP 1 Score: 416 bits (1068), Expect = 2.660e-129
Identity = 224/431 (51.97%), Postives = 281/431 (65.20%), Query Frame = 1
Query:   82 YLEDGGCGTMTDLYQSRVEKDGWTPKGPIYILDDNDDIMYSPTSVTGKWLLTSQLFVLRGSVFYCRGTSIGGDCDELRIQSTGSTDFHEVRGHGGSLYFEKTLVTSWDTPNKSPQEDYEGGRSFINCVSEYESDET--CEGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKS------NPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGGSQAAGIFLHRSSDSCEVYDNNVHDMQDAGMAILESFDADIHDNSFTNVKYGIRISLGGGNNNVYDNVFDQCSTYGLYTYQGSDAPEA-SSDGRPSDNSFYDNTISNT--ETGVKIKEGDNTIITGNTFTGTSLLEFNDAEDTVWTSNT 1341
            Y E GGCGT+T +Y+++ E DG     P+Y+LD+N+D++    + TG WLL   L V+ GS     GT+  GD D LR+ ST S DF EVRG+GG+L+F+ T VTSWDT N   +E    GRSFINCV++++      C+G+   ++GECRMDII S MG +GWFD+ESYGLTWKVRG C          N E+F+  NVYGDI NS+I+ MYYG YSYGHQGGVW +N M DN QYGFDPHDDSD LTI+                             +GG  A GIFLHRSSD  EV+DN V++MQDAGMA++ES+DA+I+DNSFTN +YGIR+SLG G N + +N+F   + YGLYTY GSD P+  +S+GRPSDN F  NTI       GV IKEGD+ +   N FTG S  EF D+ DT W  NT
Sbjct:  192 YFEGGGCGTLTQMYEAQ-EGDG-----PLYVLDENNDVVGG--TPTGYWLLDRNLRVVDGSTLLVHGTAASGDADVLRLLST-SDDFIEVRGYGGNLHFQSTTVTSWDTDNGQEREWDGDGRSFINCVTQFDDSAIWDCDGRSNQEWGECRMDIISSTMGNMGWFDAESYGLTWKVRGACEIDPDTGVPYNHEIFEDHNVYGDILNSEIYGMYYGHYSYGHQGGVWDSNIMRDNIQYGFDPHDDSDDLTISNNIVYGNGNHGIIASKRCNNVKIFNNEVYDGGEDAVGIFLHRSSDGAEVHDNVVYNMQDAGMAMMESYDANIYDNSFTNCRYGIRLSLGSGRNIITNNLFSGITQYGLYTYMGSDDPDVPNSNGRPSDNVFDGNTIETDGDNIGVHIKEGDSNVFIDNVFTGVSTYEFEDSSDTTWVDNT 613          
BLAST of mRNA_F-serratus_M_contig862.20006.1 vs. uniprot
Match: D7FWE8_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWE8_ECTSI)

HSP 1 Score: 392 bits (1008), Expect = 4.850e-118
Identity = 221/467 (47.32%), Postives = 277/467 (59.31%), Query Frame = 1
Query:   28 GTKASIRWASGTGINGRMYLEDGGCGTMTDLYQSRVEKDGWTPKGPIYILDDNDDIMYS---PTSVTGKWLLTSQLFVLRGSVFYCRGTSIGGDCDELRIQSTGSTDFHEVRGHGGSLYFEKTLVTSWDTPNKSPQEDYEGGRSFINCVSEYESDE--TCEGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGGSQAAGIFLHRSSDSCEVYDNNVHDMQDAGM------------------------AILESFDADIHDNSFTNVKYGIRISLGGGNNNVYDNVFDQCSTYGLYTYQGSDAPEAS-SDGRPSDNSFYDNTISNTETGVKIKEGDNTIITGNTFTGTSLLEFNDAEDTVWTSN 1338
            GT ASI  +S +          GGC T+TD+Y ++      +  GP+Y+LD +++I+       S TG WLLTS L +L G   Y  GTS GGD D LRIQST   DF E+RG GGSL F +T VTSWDT     + +YEGGRSFINCV++++  +  +C G+   + GECRMDIIDS MG +GWFD+ESYGLTWKVRG C+D SN E+ D  NVYGDIK S+I+ MYYGMYSYGHQGGVWT+N M DN  YGFDPHDDSD LTIA                               G+   GI   +  ++ E+Y                                    A++ESF A+I+DN+  N KYGIR+SLG  +N+++DN FD  STYGLYTY+GSD P+ S +DGR  DNSF  NTISNT+  +KIKEGD+   T N F      EF D+ DTVWT+N
Sbjct:  396 GTIASISTSSDSSS-----FSGGGCATLTDMYNTQ------SGSGPLYVLDSSNNIVSGGGGSASPTGYWLLTSSLEILDGVTLYVHGTSAGGDADVLRIQST-DDDFWEIRGWGGSLSFLETTVTSWDTDKGEERTEYEGGRSFINCVTQFDDSDIWSCSGRSNKERGECRMDIIDSTMGNMGWFDAESYGLTWKVRGLCSDLSNVEIMDDHNVYGDIKGSEIYGMYYGMYSYGHQGGVWTDNVMRDNILYGFDPHDDSDDLTIAGNTVY--------------------------GNGNHGIIASKRCNNVEIYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALMESFRAEIYDNTIENCKYGIRLSLGSADNDIHDNTFDSSSTYGLYTYKGSDDPDVSGNDGRVKDNSFDANTISNTDVAMKIKEGDDNSFTNNVFENVKTFEFEDSTDTVWTNN 824          
BLAST of mRNA_F-serratus_M_contig862.20006.1 vs. uniprot
Match: D7G339_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G339_ECTSI)

HSP 1 Score: 377 bits (969), Expect = 1.880e-116
Identity = 219/476 (46.01%), Postives = 278/476 (58.40%), Query Frame = 1
Query:   40 SIRWASGTGINGRMYLED-------GGCGTMTDLYQSRVEKDGWTPKGPIYILD-DNDDIMYSPTSVTGKWLLTSQLFVLRGSVFYCRGTSIGGDCDELRIQSTGSTDFHEVRGHGGSLYFEKTLVTSWDTPNKSPQEDYEGGRSFINCVSEY--ESDETCEGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGGSQAAGIFLHRSSDSCEVYDNNVHDMQDAGMAILESFDADIHDNSFTNVKYGIRISLGGGNNNVYDNVFDQCSTYGLYTYQGSDAPEASSDGRPSDNSFYDNTISNTETGVKIKEGDNTIITGNTF-TGTS---LLEFNDAEDTVWTSNTFED-------ADSDLCYKNIASSTFESI 1404
            SIR+A   G   R+YLE        GGC T+  +++SR  K      GP+Y +D D+ ++    TS TG WLLT +L+V  G      G+  GGD DELR+ ST  T F  +R HGGSL F  T V SWDT   SP ED   GRS+I+ +SE   + DETCEG  KN  GE RMDI  SE+GYLG++DSESYGLTWKVRGFC DKSNPEVFD  NVYG++ +SDIHHM +G+Y+YGHQ G W  NKMHDN  YGFDPHDDSD+LTI                               G   +AGIFLHRSSD   V  N VHD  DAG+A+LESF+AD+ +N+F N KYG+R S+G  +N   +N     + Y  Y+Y G+D P+  S GR  +N F  N+ S  E  +KIKE D T    N F  G +   ++ F++A + +   NT  D        D+D C+   A S +E +
Sbjct:   45 SIRYA---GTTARLYLESADNGTTRGGCVTLGQIWESRAGK------GPLYAVDPDSGNVS---TSATGTWLLTEELYVEDGITLKVYGSEAGGDADELRLLSTNET-FINLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVSIQGNEVYGGAETSAGIFLHRSSDDAIVKGNYVHDNGDAGLAMLESFNADVSENTFENNKYGVRFSVGCADNVFSNNTISNNAEYNAYSYLGTDEPDVVSSGRSQNNVFSQNSFSGAEETIKIKEADGTQFLDNVFEVGDADGLVVRFDNATENLMQGNTGLDDGEFELKVDNDACFDGEADSGYEPV 507          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig862.20006.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRM4_ECTSI5.160e-17961.10Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectoca... [more]
D8LC73_ECTSI1.030e-16958.77Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus sili... [more]
A0A6H5JGU8_9PHAE5.340e-16656.06MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7FRR8_ECTSI4.940e-15754.79Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5KWQ2_9PHAE7.000e-14161.67MEP2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7FIU4_ECTSI1.620e-13556.24Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5JNF5_9PHAE1.210e-12949.89MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D7G8D9_ECTSI2.660e-12951.97Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
D7FWE8_ECTSI4.850e-11847.32Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
D7G339_ECTSI1.880e-11646.01Mannuronan C-5-epimerase n=2 Tax=Ectocarpus silicu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig862contigF-serratus_M_contig862:69604..74011 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score535.4
Seed ortholog evalue2.7e-149
Seed eggNOG ortholog2880.D8LC73
KEGG koko:K11244
KEGG Pathwayko04011,ko04139,map04011,map04139
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons6
Model size3130
Cds size1428
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig862.20006.1prot_F-serratus_M_contig862.20006.1Fucus serratus malepolypeptideF-serratus_M_contig862 69607..72312 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932533.3333087-UTR-F-serratus_M_contig862:69603..696061622932533.3333087-UTR-F-serratus_M_contig862:69603..69606Fucus serratus maleUTRF-serratus_M_contig862 69604..69606 +
1690964353.2823105-UTR-F-serratus_M_contig862:69603..696061690964353.2823105-UTR-F-serratus_M_contig862:69603..69606Fucus serratus maleUTRF-serratus_M_contig862 69604..69606 +
1622932533.444639-UTR-F-serratus_M_contig862:72312..740111622932533.444639-UTR-F-serratus_M_contig862:72312..74011Fucus serratus maleUTRF-serratus_M_contig862 72313..74011 +
1690964353.357999-UTR-F-serratus_M_contig862:72312..740111690964353.357999-UTR-F-serratus_M_contig862:72312..74011Fucus serratus maleUTRF-serratus_M_contig862 72313..74011 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932533.3469372-CDS-F-serratus_M_contig862:69606..696851622932533.3469372-CDS-F-serratus_M_contig862:69606..69685Fucus serratus maleCDSF-serratus_M_contig862 69607..69685 +
1690964353.2928178-CDS-F-serratus_M_contig862:69606..696851690964353.2928178-CDS-F-serratus_M_contig862:69606..69685Fucus serratus maleCDSF-serratus_M_contig862 69607..69685 +
1622932533.3606303-CDS-F-serratus_M_contig862:69971..706121622932533.3606303-CDS-F-serratus_M_contig862:69971..70612Fucus serratus maleCDSF-serratus_M_contig862 69972..70612 +
1690964353.3019576-CDS-F-serratus_M_contig862:69971..706121690964353.3019576-CDS-F-serratus_M_contig862:69971..70612Fucus serratus maleCDSF-serratus_M_contig862 69972..70612 +
1622932533.3773687-CDS-F-serratus_M_contig862:70779..710171622932533.3773687-CDS-F-serratus_M_contig862:70779..71017Fucus serratus maleCDSF-serratus_M_contig862 70780..71017 +
1690964353.3119986-CDS-F-serratus_M_contig862:70779..710171690964353.3119986-CDS-F-serratus_M_contig862:70779..71017Fucus serratus maleCDSF-serratus_M_contig862 70780..71017 +
1622932533.3896887-CDS-F-serratus_M_contig862:71234..713991622932533.3896887-CDS-F-serratus_M_contig862:71234..71399Fucus serratus maleCDSF-serratus_M_contig862 71235..71399 +
1690964353.3223734-CDS-F-serratus_M_contig862:71234..713991690964353.3223734-CDS-F-serratus_M_contig862:71234..71399Fucus serratus maleCDSF-serratus_M_contig862 71235..71399 +
1622932533.4060776-CDS-F-serratus_M_contig862:71614..717581622932533.4060776-CDS-F-serratus_M_contig862:71614..71758Fucus serratus maleCDSF-serratus_M_contig862 71615..71758 +
1690964353.3333251-CDS-F-serratus_M_contig862:71614..717581690964353.3333251-CDS-F-serratus_M_contig862:71614..71758Fucus serratus maleCDSF-serratus_M_contig862 71615..71758 +
1622932533.4233685-CDS-F-serratus_M_contig862:72151..723121622932533.4233685-CDS-F-serratus_M_contig862:72151..72312Fucus serratus maleCDSF-serratus_M_contig862 72152..72312 +
1690964353.3450544-CDS-F-serratus_M_contig862:72151..723121690964353.3450544-CDS-F-serratus_M_contig862:72151..72312Fucus serratus maleCDSF-serratus_M_contig862 72152..72312 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig862.20006.1

>prot_F-serratus_M_contig862.20006.1 ID=prot_F-serratus_M_contig862.20006.1|Name=mRNA_F-serratus_M_contig862.20006.1|organism=Fucus serratus male|type=polypeptide|length=476bp
MTIPDECTGTKASIRWASGTGINGRMYLEDGGCGTMTDLYQSRVEKDGWT
PKGPIYILDDNDDIMYSPTSVTGKWLLTSQLFVLRGSVFYCRGTSIGGDC
DELRIQSTGSTDFHEVRGHGGSLYFEKTLVTSWDTPNKSPQEDYEGGRSF
INCVSEYESDETCEGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKV
RGFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMH
DNHQYGFDPHDDSDYLTIANNEVYDNVNHGIIASKRCNNLKIYGNEVYNG
GSQAAGIFLHRSSDSCEVYDNNVHDMQDAGMAILESFDADIHDNSFTNVK
YGIRISLGGGNNNVYDNVFDQCSTYGLYTYQGSDAPEASSDGRPSDNSFY
DNTISNTETGVKIKEGDNTIITGNTFTGTSLLEFNDAEDTVWTSNTFEDA
DSDLCYKNIASSTFESIDGTIPSLC*
back to top

mRNA from alignment at F-serratus_M_contig862:69604..74011+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig862.20006.1 ID=mRNA_F-serratus_M_contig862.20006.1|Name=mRNA_F-serratus_M_contig862.20006.1|organism=Fucus serratus male|type=mRNA|length=4408bp|location=Sequence derived from alignment at F-serratus_M_contig862:69604..74011+ (Fucus serratus male)
GTCATGACTATCCCAGATGAGTGCACTGGCACAAAGGCTTCCATTCGCTG GGCATCTGGCACCGGGATCAACGGTCGCATGTGTGAGTACCTCGAAAGCC TGTACGTTTTGTTTGGCGATTTTTCTTCTGTCCCCACGAGATTTTGTTAC TTGTTTATTTTGTGGTCTGTTTCGGATTTTGCATTTTCGTTTGTTTTGCG TACCTATGTGCGAGTAGACTAGTGCTCGAAGCATGTTTCGGGTGAAAACA TGCGTTCCCTAGAATGTTAGAGTCGAAATCTCGTGTGTCTGCTTAAATTC GATTTTATGCGTCGGCGATTCCGACATTTCTATTTTTATCACTTTTTCGA TATTCAACGGTGAACCAGACCTCGAGGATGGAGGCTGCGGCACCATGACC GACTTGTACCAGAGTCGTGTGGAGAAGGATGGCTGGACCCCAAAAGGCCC CATCTACATCCTCGATGACAACGACGACATCATGTACAGCCCCACCAGCG TGACAGGCAAGTGGCTCCTCACCTCTCAGCTGTTCGTCCTCAGAGGGTCC GTCTTCTACTGCCGCGGCACCAGCATAGGCGGCGACTGCGACGAACTGCG AATCCAGTCTACCGGCTCCACCGACTTCCACGAGGTGCGCGGTCATGGTG GCAGCCTGTACTTCGAGAAGACCCTCGTTACCTCTTGGGACACCCCCAAC AAGAGCCCGCAAGAGGACTACGAGGGCGGCCGCTCGTTCATCAACTGTGT GTCAGAGTACGAGTCGGACGAGACGTGTGAGGGCCAGCCTAAAAATGACT ACGGGGAGTGCCGCATGGATATTATCGATTCCGAGATGGGTTATTTGGGA TGGTTCGACTCGGAGTCCTACGGTCTAACCTGGAAAGTCAGAGGGTTCTG CGCCGACAAGAGCAACCCGGAAGTGTTCGACACTACGAACGTATACGGTG ACATCAAGAACTCCGACATTCACCACATGTACTACGGCATGTACTCCTAC GGCCACCAGGTAACCTGTGTTCATACCTAGGTTCTAAGAAATGCAACGTT TACAAGACCCGGTCGGGCGGGCGATATCTCACTTGAGTGTTTCCCTCATT GTATGTGTTGTTTTCAATTCCGACCCCGACTCTTGTGCTTGCATCAATCC TGGTGGTACATGTGTCTCGGGCATAGGGCGGCGTGTGGACAAACAACAAG ATGCACGACAACCACCAGTACGGTTTCGACCCTCACGACGACTCCGACTA CCTCACCATCGCCAACAACGAGGTCTACGACAACGTGAACCATGGCATCA TTGCCTCTAAGCGCTGCAACAATCTCAAGATCTATGGAAATGAGGTCTAC AATGGCGGGTCACAGGCTGCGGGCATCTTCCTCCACCGCAGCTCCGACAG CTGTGAAGTCTACGGTGAGCCCAGTGGCCCGATCCACCTGTAGTTTTCAT ACCTGTGCCACGTTGGTCGACGTTCCCGCGCATAAGCGTTCGAGGCGCGT ATAGTTTGAAGGCAATCTCTAGACTCCTCTCTCCTAGAAAAATCCATGAT GTGTCACATGCTGATAATGTCGTCTTTCGTCTTTCCGTCTTATGCCGAAA TCGCCTAAACGAAACCGGATTCGCATTGTAGATAACAACGTACACGACAT GCAAGACGCGGGTATGGCCATATTGGAGTCTTTCGACGCTGACATTCACG ACAACAGCTTCACAAACGTCAAGTACGGCATCCGCATCAGCCTGGGCGGA GGGAACAACAATGTGTACGACAACGTGTTCGATCAATGTTCCACGTGTGA GTATCGCATCCATGTGGACTTATGGAAGCCCAATTTTCCTCACCAAATTA CGCCAGGCGTATGATACCGAGAGAGAGACGGACAATGGGGTATCTAAAGC ACGAGTAGTCATGGAATACGAGAAGGTTCTTATCGTTTATTTCTTACCCG TCTGCATCTCCGTCTATTCCCCGGGTCCCTCGTCGACAACTTTATACGGT GTCATTTGCAGACGGTCTGTACACCTACCAGGGATCCGACGCCCCCGAGG CTTCTTCTGATGGCCGACCAAGTGACAACAGCTTCTACGACAACACAATC TCTAATACTGAGACCGGCGTCAAGATTAAAGAAGGAGACAACACCATTAT CACTGGTGAGATAAAATATCAAACCATAGAGGTTTAGCATTCATTGTAGA TCCTTTAAAGTTCTCAACCAACTAACCAGAGAGTGCCACTGGTGGAGTAT AGAAGCAGAGCTGGTTTCGAGAGAGGTTTTGGTCCGAGATGGTGTGTCGC ATGGTTTGAAAAATTAAGTTAGTTGCGGCCATTGTAGAAACTACAGTGCG TGGCGAGGGGAGGTTTCTGGAGTCATGACTCAGTAGTCCAGTGGTTTAGC GCTTCTAACTCATAATCCGCACGAGACCTCGTCAATATCTGAAACACTTG CTGTGGCGCTTCTTGATTCACGATTTCCTCGACATCTCTGCCGCTGTTGG GGACTGGACTTGTGGGTTGTACTGCTCGTGTTGTCTTGTCTCGAGAAGGC AACACCTTTACTGGAACATCTCTTCTCGAGTTTAACGACGCTGAGGACAC GGTGTGGACAAGCAACACCTTCGAGGACGCCGACTCTGATCTCTGCTACA AGAACATTGCAAGCAGCACGTTCGAGTCCATCGACGGCACTATTCCCTCT CTTTGCTAGGCAGGCTCACACCACCTATATATATCTAGGTTGGTGACGGA AACCATGCCTCACACTTCGTACTCGTAACAGAAATAAACAGGAGACAACA CCGAGCATGGTGATCGATCTCAAAAACCGCGTCGGTATTAAGCATGCCTT GGTGCTCATAGTCTTGCGGAGCTCTTCTTCGACTAAGAACTTGTAATGCT TGTTGTGTTGTCCGGCTCGACAGTTGAGAAGCTTTCGAGTGTTGGAAACG TTATCGGCGGTGGCAATAGGTTAACAGAAGGTGGCGAGAAAGGTCTCCTT GAAGGCACACGTGTATCTTTTCCTTGATCTGAGATTTCATGCACCTCCAG TCACTCGGGAAACCATAAATAATGCAGCACCTCTTCCAGGTCTTCTCACG TAATTTTTATACCAGCCAGGCTCTAATCAACGGCATTCTGTTGATACTCA ATATATTTGTAATCGGGTGAGAGTGGACATCCGTCATCTGGTGTTGCACG CAGTTTCATTGGGTACTTGAAATATAATGAAGCTGCATTGCCACGTCCCC CACCTCCAAGGCAGTAGCTTTTCGTATTCAGGTGCCAGGATTGCGTGCGT AGGTTTGTAAGCACGTCCCAGATTGGCATTTGCGTGGGACCAGTTGTAAG CATCGTCGCCCGATTGGTCTTCTATTAATAGTAGATAACATGTGCACCTG CTAGTGCGGAAGTTATGAGTTCGATTCTTGTCAAAGGAGCTTTTTTATCC TGGTGTCCGAAGCGGAAAACGTGAATATGTGTGTAAGTAAAATTCAACCA TTGGTTGACGAGTTGTAAGAATGCTGAACTTACATCGCGATAAAACATGG TAAGGCGTGCACTGGGAGAGATGGCATGGGAAGATCCCCCGTAGCCACAG GCGGGTTGGCAGCGTTGAAGTCCATCGGCTATAAAGGTTCTAGGTTATTG TAGTGCGAGAAGAAAAAAAACGAATTAGGTAAGTGTGTACACTTGCCGAC AAGAATCAGTGGACTCTTGTACGATCGGTCAGTCTACCACCAGATGATGG TGCGCTGGTAAGGTATGGTATTCCGCCTAATTAAAGGGTTGAGGTAGCGG ACGAAATAAATGTAGACTGTGGGGTACGTGGAGCGTTATTTTGATTCTAA GTCCTAGAGAGGCGCACTCATAACAATATTATAGCAATTATTGAGGTGGT CATTGGCATGAGGTGTGATGATGACGTTAACAATTGATTATGGAAGCCAG TATATGTTGAATATCACTCTTGCCAACCCGCTAGGTCGCCACACGTGTCA ACAGAGGGGGGAAGCAGAACAGAGGGTTGAAAATAAACATTGTTGAGGGC GAGCTTAAGAAAATTGGGATATTGATGAGACCACGAGAGTATTTGTGGTA ATGATTTTAGCAGGTTAGCACAAAAAAAGTTGTGTACCACGAAGAAGTTG TTGTTTTCGCGAGCTTCTTGTTACACGTTGTTAGTGATCCTTGCGCCAAC GCAGCTCCCACCTCTACAGTTTGGATACACGCACCGTCTATGTTTGTCTG TGTATGTGTGAGTTGGTTACGGTTAACAGAATGTACATCGACCGTAGATG GCTGTCATTAAAATTGGTTTTGTGAACTTGTTACTGTATTATAAGACAGC CTCGGCCGTCCCGTCTGGCGTCAACCTATGGAATATGACGCAATAGCTGC GAGCCACC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig862:69604..74011+

>mRNA_F-serratus_M_contig862.20006.1 ID=mRNA_F-serratus_M_contig862.20006.1|Name=mRNA_F-serratus_M_contig862.20006.1|organism=Fucus serratus male|type=CDS|length=2856bp|location=Sequence derived from alignment at F-serratus_M_contig862:69604..74011+ (Fucus serratus male)
ATGACTATCCCAGATGAGTGCACTGGCACAAAGGCTTCCATTCGCTGGGC
ATCTGGCACCGGGATCAACGGTCGCATGTATGACTATCCCAGATGAGTGC
ACTGGCACAAAGGCTTCCATTCGCTGGGCATCTGGCACCGGGATCAACGG
TCGCATGTACCTCGAGGATGGAGGCTGCGGCACCATGACCGACTTGTACC
AGAGTCGTGTGGAGAAGGATGGCTGGACCCCAAAAGGCCCCATCTACATC
CTCGATGACAACGACGACATCATGTACAGCCCCACCAGCGTGACAGGCAA
GTGGCTCCTCACCTCTCAGCTGTTCGTCCTCAGAGGGTCCGTCTTCTACT
GCCGCGGCACCAGCATAGGCGGCGACTGCGACGAACTGCGAATCCAGTCT
ACCGGCTCCACCGACTTCCACGAGGTGCGCGGTCATGGTGGCAGCCTGTA
CTTCGAGAAGACCCTCGTTACCTCTTGGGACACCCCCAACAAGAGCCCGC
AAGAGGACTACGAGGGCGGCCGCTCGTTCATCAACTGTGTGTCAGAGTAC
GAGTCGGACGAGACGTGTGAGGGCCAGCCTAAAAATGACTACGGGGAGTG
CCGCATGGATATTATCGATTCCGAGATGGGTTATTTGGGATGGTTCGACT
CGGAGTCCTACGGTCTAACCTGGAAAGTCAGAGGGTTCTGCGCCGACAAG
AGCAACCCGGAAGTGTTCGACACTACGAACGTATACGGTGACATCAAGAA
CTCCGACATTCACCACATGTACTACGGCATGTACTCCTACGGCCACCAGA
CCTCGAGGATGGAGGCTGCGGCACCATGACCGACTTGTACCAGAGTCGTG
TGGAGAAGGATGGCTGGACCCCAAAAGGCCCCATCTACATCCTCGATGAC
AACGACGACATCATGTACAGCCCCACCAGCGTGACAGGCAAGTGGCTCCT
CACCTCTCAGCTGTTCGTCCTCAGAGGGTCCGTCTTCTACTGCCGCGGCA
CCAGCATAGGCGGCGACTGCGACGAACTGCGAATCCAGTCTACCGGCTCC
ACCGACTTCCACGAGGTGCGCGGTCATGGTGGCAGCCTGTACTTCGAGAA
GACCCTCGTTACCTCTTGGGACACCCCCAACAAGAGCCCGCAAGAGGACT
ACGAGGGCGGCCGCTCGTTCATCAACTGTGTGTCAGAGTACGAGTCGGAC
GAGACGTGTGAGGGCCAGCCTAAAAATGACTACGGGGAGTGCCGCATGGA
TATTATCGATTCCGAGATGGGTTATTTGGGATGGTTCGACTCGGAGTCCT
ACGGTCTAACCTGGAAAGTCAGAGGGTTCTGCGCCGACAAGAGCAACCCG
GAAGTGTTCGACACTACGAACGTATACGGTGACATCAAGAACTCCGACAT
TCACCACATGTACTACGGCATGTACTCCTACGGCCACCAGGGCGGCGTGT
GGACAAACAACAAGATGCACGACAACCACCAGTACGGTTTCGACCCTCAC
GACGACTCCGACTACCTCACCATCGCCAACAACGAGGTCTACGACAACGT
GAACCATGGCATCATTGCCTCTAAGCGCTGCAACAATCTCAAGATCTATG
GAAATGAGGTCTACAATGGCGGGTCACAGGCTGCGGGCATCTTCCTCCAC
CGCAGCTCCGACAGCTGTGAAGTCTACGGGCGGCGTGTGGACAAACAACA
AGATGCACGACAACCACCAGTACGGTTTCGACCCTCACGACGACTCCGAC
TACCTCACCATCGCCAACAACGAGGTCTACGACAACGTGAACCATGGCAT
CATTGCCTCTAAGCGCTGCAACAATCTCAAGATCTATGGAAATGAGGTCT
ACAATGGCGGGTCACAGGCTGCGGGCATCTTCCTCCACCGCAGCTCCGAC
AGCTGTGAAGTCTACGATAACAACGTACACGACATGCAAGACGCGGGTAT
GGCCATATTGGAGTCTTTCGACGCTGACATTCACGACAACAGCTTCACAA
ACGTCAAGTACGGCATCCGCATCAGCCTGGGCGGAGGGAACAACAATGTG
TACGACAACGTGTTCGATCAATGTTCCACGTATAACAACGTACACGACAT
GCAAGACGCGGGTATGGCCATATTGGAGTCTTTCGACGCTGACATTCACG
ACAACAGCTTCACAAACGTCAAGTACGGCATCCGCATCAGCCTGGGCGGA
GGGAACAACAATGTGTACGACAACGTGTTCGATCAATGTTCCACGTACGG
TCTGTACACCTACCAGGGATCCGACGCCCCCGAGGCTTCTTCTGATGGCC
GACCAAGTGACAACAGCTTCTACGACAACACAATCTCTAATACTGAGACC
GGCGTCAAGATTAAAGAAGGAGACAACACCATTATCACTGACGGTCTGTA
CACCTACCAGGGATCCGACGCCCCCGAGGCTTCTTCTGATGGCCGACCAA
GTGACAACAGCTTCTACGACAACACAATCTCTAATACTGAGACCGGCGTC
AAGATTAAAGAAGGAGACAACACCATTATCACTGGCAACACCTTTACTGG
AACATCTCTTCTCGAGTTTAACGACGCTGAGGACACGGTGTGGACAAGCA
ACACCTTCGAGGACGCCGACTCTGATCTCTGCTACAAGAACATTGCAAGC
AGCACGTTCGAGTCCATCGACGGCACTATTCCCTCTCTTTGCTAGGCAAC
ACCTTTACTGGAACATCTCTTCTCGAGTTTAACGACGCTGAGGACACGGT
GTGGACAAGCAACACCTTCGAGGACGCCGACTCTGATCTCTGCTACAAGA
ACATTGCAAGCAGCACGTTCGAGTCCATCGACGGCACTATTCCCTCTCTT
TGCTAG
back to top