prot_F-serratus_M_contig8619.20004.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig8619.20004.1
Unique Nameprot_F-serratus_M_contig8619.20004.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length147
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig8619.20004.1 vs. uniprot
Match: A0A6H5JPB8_9PHAE (CCHC-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPB8_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 1.800e-5
Identity = 35/128 (27.34%), Postives = 60/128 (46.88%), Query Frame = 0 
Query:    4 RHLRAWVYFSQAFTIKTDVGRFRRSNSPGKFWEETVKWYGARTVGQQTVLRKRLHNFQIGKGCNPIEKLHEIEDICEEMRDAKMTVDDQTVYSIYVSALPSEYDLEIRELGRKQVFDRDEIMNLVQAQ 131
            R L+A+ + S A   + D   F R  +P +  +E  K +   +      L  +  NF +    NP E L  +E +   + +  + V+   V S+++SALP+EYD     L      DR E++ +V +Q
Sbjct:  203 RSLQAFHFLSSALVREPDKAVFGRCVTPKQALDELDKVHNPESQVATQELLSKFQNFAMPADKNPTESLIAMEQLASRLNERGVRVEASYVLSLFLSALPAEYDHAKLTLQSAPTLDRGEVIRVVGSQ 330
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig8619.20004.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JPB8_9PHAE1.800e-527.34CCHC-type domain-containing protein n=7 Tax=Ectoca... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 25..112
e-value: 1.7E-7
score: 31.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig8619contigF-serratus_M_contig8619:4082..4522 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig8619.20004.1mRNA_F-serratus_M_contig8619.20004.1Fucus serratus malemRNAF-serratus_M_contig8619 4082..4522 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig8619.20004.1 ID=prot_F-serratus_M_contig8619.20004.1|Name=mRNA_F-serratus_M_contig8619.20004.1|organism=Fucus serratus male|type=polypeptide|length=147bp
MYERHLRAWVYFSQAFTIKTDVGRFRRSNSPGKFWEETVKWYGARTVGQQ
TVLRKRLHNFQIGKGCNPIEKLHEIEDICEEMRDAKMTVDDQTVYSIYVS
ALPSEYDLEIRELGRKQVFDRDEIMNLVQAQFELLSKKKKSSSSAHA
back to top