mRNA_F-serratus_M_contig860.19998.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig860.19998.1
Unique NamemRNA_F-serratus_M_contig860.19998.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig860.19998.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig860contigF-serratus_M_contig860:338207..339738 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size368
Cds size366
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig860.19998.1prot_F-serratus_M_contig860.19998.1Fucus serratus malepolypeptideF-serratus_M_contig860 338208..339738 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932529.739142-CDS-F-serratus_M_contig860:338207..3382641622932529.739142-CDS-F-serratus_M_contig860:338207..338264Fucus serratus maleCDSF-serratus_M_contig860 338208..338264 -
1690964351.589567-CDS-F-serratus_M_contig860:338207..3382641690964351.589567-CDS-F-serratus_M_contig860:338207..338264Fucus serratus maleCDSF-serratus_M_contig860 338208..338264 -
1622932529.7630534-CDS-F-serratus_M_contig860:338806..3389321622932529.7630534-CDS-F-serratus_M_contig860:338806..338932Fucus serratus maleCDSF-serratus_M_contig860 338807..338932 -
1690964351.6048129-CDS-F-serratus_M_contig860:338806..3389321690964351.6048129-CDS-F-serratus_M_contig860:338806..338932Fucus serratus maleCDSF-serratus_M_contig860 338807..338932 -
1622932529.7806132-CDS-F-serratus_M_contig860:339342..3394681622932529.7806132-CDS-F-serratus_M_contig860:339342..339468Fucus serratus maleCDSF-serratus_M_contig860 339343..339468 -
1690964351.6149044-CDS-F-serratus_M_contig860:339342..3394681690964351.6149044-CDS-F-serratus_M_contig860:339342..339468Fucus serratus maleCDSF-serratus_M_contig860 339343..339468 -
1622932529.800271-CDS-F-serratus_M_contig860:339681..3397381622932529.800271-CDS-F-serratus_M_contig860:339681..339738Fucus serratus maleCDSF-serratus_M_contig860 339682..339738 -
1690964351.6254306-CDS-F-serratus_M_contig860:339681..3397381690964351.6254306-CDS-F-serratus_M_contig860:339681..339738Fucus serratus maleCDSF-serratus_M_contig860 339682..339738 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig860.19998.1

>prot_F-serratus_M_contig860.19998.1 ID=prot_F-serratus_M_contig860.19998.1|Name=mRNA_F-serratus_M_contig860.19998.1|organism=Fucus serratus male|type=polypeptide|length=122bp
EHPDVAQSLHYRGWLLFQQAKYAEAAPLNERSQAIREKMLDPDHPELAEA
LHNRAAVFHAQGNFAEAEPLYAQSLEILERTLGPQHPDPAIAVSNRAVLL
HQQGKQAEAERLHRRALGILSA
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mRNA from alignment at F-serratus_M_contig860:338207..339738-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig860.19998.1 ID=mRNA_F-serratus_M_contig860.19998.1|Name=mRNA_F-serratus_M_contig860.19998.1|organism=Fucus serratus male|type=mRNA|length=1532bp|location=Sequence derived from alignment at F-serratus_M_contig860:338207..339738- (Fucus serratus male)
GAGCACCCTGATGTGGCCCAGTCGCTCCATTACCGGGGATGGTTATTATT
TCAACAGGTGAAAATTAAGAGTCATATTTTACTTTCTCGGCAAGCTTTAT
TTCTTAGCAGATAAGTTTTCGTCGATCAGCCTGAACGACGTTTTATGAGA
GAAAGAATAAATATGTGGTTTGCCCCTCTGCGACGCGGCTCAGCTACTGG
TGCCACATTGGTCGGCATTATGTTTCAAGAAGGATACGCTTTCCATCTAC
AAAACTTGCTCCTCGCACAGGCCAAGTACGCCGAGGCTGCCCCGCTTAAT
GAGCGGTCACAGGCAATCCGAGAGAAGATGCTGGATCCTGATCACCCGGA
GCTGGCAGAAGCGCTCCACAACCGGGCAGCAGTGTTCCACGCACAAGTAA
GAAAACGCGAAATGTATCATCAACGATGGGAAATTCAACGTTTGGTGGTA
TCAGATCCAGGCCCGGGTGTGGAGAATGAGCGGGCTGGCGCGGGACGGGA
CGGCCGAACCTGTCTCGCGGGATCAATTTCTCGGGCGCGAATGAGGACAG
GAAAAAATGCATTTTCCCGGTTCAGCTGATCACAAGCAAACTTGGCAACC
ATACCTATTGGATGTCCAATCTACTATATATGATGACCGTTTATACATAC
ATAGGGCATGAAATGAATACCTTAAGGTATTAATAGCGGATCTCTTCGCC
AAATTCAGGCTTTGCCGAAGCACCGCGATAAACTATTTACGACGAACTCC
TTCCGTAATGCTTGTCACGAACAAAATGTACGTATCAACGCTGCGCGTAA
TCAAAGGGAAATTTCGCTGAAGCAGAACCCCTGTATGCGCAGTCCTTGGA
GATATTGGAGCGGACCTTAGGCCCGCAACACCCCGATCCGGCTATAGCCG
TCAGCAACCGTGCCGTCTTGCTACATCAGCAGGTAACAAAACCGCCGAGG
ATACACAAAGGCGAATTGAAACGTCCCTACCAAAGCGTTATAATCTATAC
CCGACATCGTGTTCTGGGCCCTGTATCTCTCGGCACGACTAGACCGTTAT
CGCGCGGACGGTTTTCACAACCGGACGCGTTGCCGTTGGACGAAGGAGCT
GGGGGTTCTGATGAATCAAAAATATGTTTCTATTCTTTCGTCCTATGACA
CCGAGTCCGCTTCACGGAGCTCATGAAACAGATGGGGAGGGGGGGGGTGT
CCTAAAATTATCCCCGAGTTGAGGGGGGGCCGACACGAAAAAAGCCCCTC
CCGGGGACAGAGTTCACCACCGCCTTGGTAGAATGAGTTGAGTCTGGGGC
AAATGAAGTTCCATTCTCGGCACGGGCTGTTTTCGTGACATCCCTGGGGA
CGAGATCATCGAATCCCCTCCCCCCAATTCTTTGAACTACTCTCGTGGCG
AACATTGGCGAACGTTTTTATGCCTAGGCACCTTCTGGTCTCCTTCTTTT
TGTTTTCTCAATCTCTCTGAGCAGGGAAAACAAGCTGAGGCTGAGCGTCT
TCATCGCAGAGCGCTGGGTATCCTGAGCGCCA
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Coding sequence (CDS) from alignment at F-serratus_M_contig860:338207..339738-

>mRNA_F-serratus_M_contig860.19998.1 ID=mRNA_F-serratus_M_contig860.19998.1|Name=mRNA_F-serratus_M_contig860.19998.1|organism=Fucus serratus male|type=CDS|length=732bp|location=Sequence derived from alignment at F-serratus_M_contig860:338207..339738- (Fucus serratus male)
GAGCACCCTGATGTGGCCCAGTCGCTCCATTACCGGGGATGGTTATTATT
TCAACAGGAGCACCCTGATGTGGCCCAGTCGCTCCATTACCGGGGATGGT
TATTATTTCAACAGGCCAAGTACGCCGAGGCTGCCCCGCTTAATGAGCGG
TCACAGGCAATCCGAGAGAAGATGCTGGATCCTGATCACCCGGAGCTGGC
AGAAGCGCTCCACAACCGGGCAGCAGTGTTCCACGCACAAGCCAAGTACG
CCGAGGCTGCCCCGCTTAATGAGCGGTCACAGGCAATCCGAGAGAAGATG
CTGGATCCTGATCACCCGGAGCTGGCAGAAGCGCTCCACAACCGGGCAGC
AGTGTTCCACGCACAAGGAAATTTCGCTGAAGCAGAACCCCTGTATGCGC
AGTCCTTGGAGATATTGGAGCGGACCTTAGGCCCGCAACACCCCGATCCG
GCTATAGCCGTCAGCAACCGTGCCGTCTTGCTACATCAGCAGGGAAATTT
CGCTGAAGCAGAACCCCTGTATGCGCAGTCCTTGGAGATATTGGAGCGGA
CCTTAGGCCCGCAACACCCCGATCCGGCTATAGCCGTCAGCAACCGTGCC
GTCTTGCTACATCAGCAGGGAAAACAAGCTGAGGCTGAGCGTCTTCATCG
CAGAGCGCTGGGTATCCTGAGCGCCGGAAAACAAGCTGAGGCTGAGCGTC
TTCATCGCAGAGCGCTGGGTATCCTGAGCGCC
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