mRNA_F-serratus_M_contig86.19981.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig86.19981.1 vs. uniprot
Match: A0A6H5K481_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K481_9PHAE) HSP 1 Score: 118 bits (296), Expect = 1.370e-25 Identity = 92/292 (31.51%), Postives = 118/292 (40.41%), Query Frame = 1
Query: 4 SLVVGDVNGDGYSDIVVPFGYM--VAWYQSETGLG-FSEANDISGS--GAEWTEIADFDGDDDIDVVACSYGGDRVTWYENTDGQGTFSVGFDITTTANNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSAKDIHVLNPEENSVAYRSSYACVAAVDLDNDEDLDLVASSVGSDEISWFENMDGEGTFSAANIVGIVTPGTVKVIAADLDDDGDLDVVAASLEPGSGSVTWYEN 864
S+ V D+NGDG+ D+VV F Y V WY++ GLG FS DI+ GA + AD DGD D D+++ S DRVTWYENTDG+GTF+VG DI+ T SS D+ V A D+D DE +D+V +S D ++WF+N DG+G F+ + G V A DLD DGDLDVV+ S G VTWYEN
Sbjct: 106 SVAVADLNGDGFPDVVVAFPYSDTVTWYRNSDGLGSFSLGVDIATDTDGAWVVKCADVDGDGDFDIISVSSFDDRVTWYENTDGEGTFAVGLDISAT-----------------------------------------------------------------------------------------SSGADMAV------------------AADIDGDEAVDIVVASFDDDRVTWFKNTDGKGAFALGVDLAQDANGATYVAAGDLDGDGDLDVVSGSYY--DGRVTWYEN 288
BLAST of mRNA_F-serratus_M_contig86.19981.1 vs. uniprot
Match: D7FHI7_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHI7_ECTSI) HSP 1 Score: 104 bits (260), Expect = 6.780e-21 Identity = 104/303 (34.32%), Postives = 140/303 (46.20%), Query Frame = 1
Query: 4 SLVVGDVNGDGYSDIVVPFG--YMVAWYQSETGLG-FSEANDIS----GSGAEWTEIADFDGDDDIDVVACSYGGDRVTWYENTDGQGTFSVGFDITTTANNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSAKDIHVLNPEENSVAYRSSYACVAAVDLDNDEDLDLVASSVGSDE---------ISWFENMDGEGTFSAANIVGIVTPGTVKVIAADLDDDGDLDVVAASLEPGSGSVTWYEN 864
S+ VGD+NGDG D+VV F + + W+ + GLG FS DI G + ++AD DGD D+DV+ S GDRVTWYENTDG+ TF+VG DI+TTA+ XXXXXXXXXXXXXXXXXX P ++ + V D+D D D+D++++S + I W EN DG G+F+ VG++ V+A DLD+DGD+D+VA + GS+ WYEN
Sbjct: 115 SIDVGDLNGDGSPDVVVAFQTTFQLTWFSNLYGLGEFSVGADIDTYEDGDQSRSVKVADLDGDGDLDVIMASKQGDRVTWYENTDGEATFAVGVDISTTADGAITLALADLDGDDDLDVISASVFSGLAXXXXXXXXXXXXXXXXXX---------------------------------------------------PADDPAGGKD----VVTADIDGDGDIDIISASFDGNHTAGSFPDGRILWLEN-DGSGSFAEGRDVGLLDSAR-NVVAVDLDNDGDIDLVAC--DGVGGSIVWYEN 358
BLAST of mRNA_F-serratus_M_contig86.19981.1 vs. uniprot
Match: D7FHI6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHI6_ECTSI) HSP 1 Score: 102 bits (253), Expect = 2.750e-20 Identity = 101/303 (33.33%), Postives = 138/303 (45.54%), Query Frame = 1
Query: 4 SLVVGDVNGDGYSDIVVPFG--YMVAWYQSETGLG-FSEANDIS----GSGAEWTEIADFDGDDDIDVVACSYGGDRVTWYENTDGQGTFSVGFDITTTANNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSAKDIHVLNPEENSVAYRSSYACVAAVDLDNDEDLDLVASSVGSDE---------ISWFENMDGEGTFSAANIVGIVTPGTVKVIAADLDDDGDLDVVAASLEPGSGSVTWYEN 864
S+ VGD+NGDG D+VV F + + W+ + GLG FS DI G + ++AD DGD D+DV+ S GDRVTWYENTDG+ TF++G DI+TTA+ XXXXXXXXXXXXXXXXX P ++ + V D+D D D+D++++S + I W EN DG G+F+ VG++ V+A DLD+DGD+D++A E G + WYEN
Sbjct: 5 SIDVGDLNGDGSPDVVVAFQTTFQLTWFSNLDGLGEFSVGTDIDTYEDGDQSRSVKVADLDGDGDLDVIMASKQGDRVTWYENTDGEATFALGVDISTTADGAITLALADLDGDDDLDVISASVFSGLAXXXXXXXXXXXXXXXXX---------------------------------------------------EPADDPAGGKD----VVTADIDGDGDMDIISASFDGNHTAGNFPDGRILWLEN-DGLGSFAEGRDVGLLDSAR-NVVAVDLDNDGDIDLLAC--ENVGGHIVWYEN 248
BLAST of mRNA_F-serratus_M_contig86.19981.1 vs. uniprot
Match: A0A1F3PQL1_9BACT (Por_Secre_tail domain-containing protein n=2 Tax=Bacteroidetes TaxID=976 RepID=A0A1F3PQL1_9BACT) HSP 1 Score: 102 bits (255), Expect = 5.340e-20 Identity = 76/295 (25.76%), Postives = 115/295 (38.98%), Query Frame = 1
Query: 1 RSLVVGDVNGDGYSDIVVPF--GYMVAWYQSETG---LGFSEANDISGSGAEWTEIADFDGDDDIDVVACSYGGDRVTWYENTDGQGTFSVGFDITTTANNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSAKDIH--VLNPEENSVAYRSSYACVAAVDLDNDEDLDLVASSVGSDEISWFENMDGEGTFSAANIVGIVTPGTVKVIAADLDDDGDLDVVAASLEPGSGSVTWYEN 864
S+ GD++GDG D++ +AWY++ G G + I+ +GA D DGD D+DV++ S +++ WYENTDG GTF +T AN P + + I + +N+ RS Y+ DLD D D+D++++S D+I+W+EN DG GTF I+ + V +ADLD DGD+DV++AS + WYEN
Sbjct: 245 NSVYCGDIDGDGDMDVLSASEDDNKIAWYENTDGNGTFGTQQVISINANGATSVYCGDIDGDGDMDVLSASEDDNKIAWYENTDGNGTFGTQQVLTIAANTPESICSADIDGDGDMDVLSASFHDDKIAWYENTDGSGTFGTQQSITTDANGARDVCCADIDGDGDMDVLSASSTDDKIAWYENTDGNGSFGIQQVITTVADNA---RSVYSA----DLDGDGDMDVLSASEDDDKIAWYENTDGNGTFGVQQIISTTAYYALSVYSADLDSDGDMDVLSASATEYEDKICWYEN 532
BLAST of mRNA_F-serratus_M_contig86.19981.1 vs. uniprot
Match: A0A3L9Y8Z0_9FLAO (Putative secreted protein (Por secretion system target) n=1 Tax=Ulvibacter antarcticus TaxID=442714 RepID=A0A3L9Y8Z0_9FLAO) HSP 1 Score: 101 bits (251), Expect = 8.110e-20 Identity = 78/293 (26.62%), Postives = 113/293 (38.57%), Query Frame = 1
Query: 4 SLVVGDVNGDGYSDIVVPFGY--MVAWYQSETGLGFSEANDISGSGAEWTE---IADFDGDDDIDVVACSYGGDRVTWYENTDGQGTFSVGFDITTTANNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSAKDIHVLNPEENSVAYRSSYACVAAVDLDNDEDLDLVASSVGSDEISWFENMDGEGTFSAANIVGIVTPGTVKVIAADLDDDGDLDVVAASLEPGSGSVTWYENL 867
S++ D++ DGY D++ +AWY++ GLG I A++ AD DGD D+DV++ S+ D++ WYEN DGQGTFS IT+ ++ + + + A S+ + A DLDND D DL+++S DEI WFENMDG G F I+ +V + DLD DGD+DV +ASL + WYEN+
Sbjct: 40 SVISADIDSDGYKDVLSASTEDGKIAWYRNLDGLGTFGPQLIISENADYATSVYAADIDGDGDLDVLSASFNDDKIAWYENLDGQGTFSTEQIITSLLDSALVILAQDVDGDGDLDVIAGSNGNSEIVWFENQNGLGQFSGPIDISENNTATESILAIDFDGDNDIDLVAALDYENKIVWY-----ENTDGLGNFGSRQVITADVSASLSIFASDLDNDGDFDLLSTSFVEDEIVWFENMDGNGNFGTKQIITSNADRPYEVYSEDLDGDGDMDVFSASLS--DNKIAWYENI 325
BLAST of mRNA_F-serratus_M_contig86.19981.1 vs. uniprot
Match: A0A1F3PTM3_9BACT (Por_Secre_tail domain-containing protein n=1 Tax=Bacteroidetes bacterium RIFOXYA12_FULL_38_20 TaxID=1797368 RepID=A0A1F3PTM3_9BACT) HSP 1 Score: 100 bits (249), Expect = 3.240e-19 Identity = 75/296 (25.34%), Postives = 119/296 (40.20%), Query Frame = 1
Query: 4 SLVVGDVNGDGYSDIVVPFGY--MVAWYQSETGLGFSEANDISGS---GAEWTEIADFDGDDDIDVVACSYGGDRVTWYENTDGQGTFSVGFDITTTANNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSAKDIHVLNPEENSVAYRSSYAC-VAAVDLDNDEDLDLVASSVGSDEISWFENMDGEGTFSAANIVGIVTPGTVKVIAADLDDDGDLDVVAASLEPGSGSVTWYENLLI 873
S+ D++GDG DI+ +AWY++ G G + S GA+ AD DGD D+DV++ S D++ W+EN DG GTFS I+T AN+P + + + ++ + YA + DLD D D+D++++S G D+I+W+EN DG G F + + + V +AD+D DGD+DV++AS++ + WYENLL+
Sbjct: 450 SIYCTDLDGDGDIDILSASSDDDKIAWYENIDGNGSYSIQQVITSVANGAQCVSSADLDGDGDMDVLSASKDDDKIAWFENIDGYGTFSFQQIISTAANSPRSVNCADLDGDGDLDVISASYQDDKIAWYENTDGFGTFGTQNVVTTLADAAHSINSADLDGDGDIDLLSASYYDDKIAWYENVDGNGTFGVQQI------ISTLADYAVSIFPADLDGDGDMDVLSASKGDDKIAWYENTDGNGAFGPQQAITTIADFAMSVYSADIDGDGDMDVLSASVD--DDKIAWYENLLV 737
BLAST of mRNA_F-serratus_M_contig86.19981.1 vs. uniprot
Match: A0A2N2Y9D1_9BACT (Por_Secre_tail domain-containing protein n=1 Tax=Bacteroidetes bacterium HGW-Bacteroidetes-2 TaxID=2013688 RepID=A0A2N2Y9D1_9BACT) HSP 1 Score: 97.8 bits (242), Expect = 1.190e-18 Identity = 83/294 (28.23%), Postives = 110/294 (37.41%), Query Frame = 1
Query: 1 RSLVVGDVNGDGYSDIV--VPFGYMVAWYQSETGLG-FSEANDISGSGAEWTEIA--DFDGDDDIDVVACSYGGDRVTWYENTDGQGTFSVGFDITTTANNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSAKDIHVLNPEENSVAYRSSYACVAAVDLDNDEDLDLVASSVGSDEISWFENMDGEGTFSAANIVGIVTPGTVKVIAADLDDDGDLDVVAASLEPGSGSVTWYENL 867
S V D++GDG DIV + VAW+++ GLG F IS + A + D DGD D+D+VA S G +TW+EN DGQG+F I T NP + + DLD D D+D++ ++ GSD ISWFEN+DG G FS I+ T V AAD+D+DGDLDV++AS G + WYENL
Sbjct: 136 NSAVAADLDGDGDLDIVTAIDLESKVAWHENLNGLGSFGPQQIISSTNANCRSVIALDMDGDGDLDIVANSSGSINLTWFENLDGQGSFGPKIIINT---NPTPIY------------------------------------------------------------------------------------------------------FNKIVGFDLDGDGDMDILGANPGSDRISWFENLDGLGNFSPEKIISTETDFARSVYAADIDNDGDLDVLSASAI--DGKIAWYENL 322
BLAST of mRNA_F-serratus_M_contig86.19981.1 vs. uniprot
Match: I3YSM9_AEQSU (Por_Secre_tail domain-containing protein n=1 Tax=Aequorivita sublithincola (strain DSM 14238 / LMG 21431 / ACAM 643 / 9-3) TaxID=746697 RepID=I3YSM9_AEQSU) HSP 1 Score: 97.4 bits (241), Expect = 1.600e-18 Identity = 80/293 (27.30%), Postives = 111/293 (37.88%), Query Frame = 1
Query: 4 SLVVGDVNGDGYSDIVVPFG--YMVAWYQSETGLG-FSEANDISGSGAEWTEI--ADFDGDDDIDVVACSYGGDRVTWYENTDGQGTFSVGFDITTTANNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSAKDIHVLNPEENSVAYRSSYACVAAVDLDNDEDLDLVASSVGSDEISWFENMDGEGTFSAANIVGIVTPGTVKVIAADLDDDGDLDVVAASLEPGSGSVTWYENL 867
S+ D++GD DIV +AWYQ+E GLG F I+ + E T + D D +DVVA S D+V W+EN DG GTF IT+ A+ + + V P++ S V A DLD D D+D++A+S D + WFEN+DG G+F ++ G + V AAD+D DGD DV+AA G G + WYEN+
Sbjct: 34 SIYSTDIDGDDRKDIVCAISGENKIAWYQNEDGLGNFGSQRIITSNLQETTTVIAVDIDXXXXMDVVAVSGPQDKVVWFENLDGLGTFGTQRLITSAADGAIGLHASDIDGDGDFDILSASFLDNKIAWY--------------------------------------------------------ENTDGLGVFGPQKLLTNSALSTRDVYAEDLDGDGDMDVIAASTADDRVIWFENLDGLGSFGPLKVINNNANGVISVRAADIDGDGDKDVIAAIF--GDGKIVWYENM 268
BLAST of mRNA_F-serratus_M_contig86.19981.1 vs. uniprot
Match: UPI0004149C7C (T9SS type A sorting domain-containing protein n=1 Tax=Aequorivita capsosiphonis TaxID=487317 RepID=UPI0004149C7C) HSP 1 Score: 96.7 bits (239), Expect = 2.150e-18 Identity = 76/292 (26.03%), Postives = 116/292 (39.73%), Query Frame = 1
Query: 7 LVVGDVNGDGYSDI--VVPFGYMVAWYQSETGLG-FSEANDISGSGAEWTEI--ADFDGDDDIDVVACSYGGDRVTWYENTDGQGTFSVGFDITTTANNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSAKDIHVLNPEENSVAYRSSYACVAAVDLDNDEDLDLVASSVGSDEISWFENMDGEGTFSAANIVGIVTPGTVKVIAADLDDDGDLDVVAASLEPGSGSVTWYENL 867
+ D++GDG D+ + FG ++ W+++ GLG FS I S +EI AD D D D DVV S G + + W+ENT+G G F IT N + + P++ + + V ++DLDND D+D++++S D++ WFEN+DG GTFS ++ +T V AAD+D+DGD DV++AS+ + WYENL
Sbjct: 41 VAAADIDGDGDMDVLGISGFGNLIVWFENMDGLGNFSSQRIIDASTILPSEIITADLDDDGDKDVVISSRGENAIIWFENTNGLGDFGPKQTIT---NGAMSGLSVYAADLDGDMDIDLVATSSGNKRLYWYENLDGLGTFGPDQLIVETLDYGGFVSVFAIDIDGDDDNDVLAAEFGGDTLSWFENTDGLATFGPQQIITSTLITPFMVFSIDLDNDGDVDVLSASGTDDKVVWFENIDGVGTFSTEKVISTLTDNPRSVYAADIDNDGDNDVLSASI--ADNKIAWYENL 327
BLAST of mRNA_F-serratus_M_contig86.19981.1 vs. uniprot
Match: UPI00165541A0 (T9SS type A sorting domain-containing protein n=1 Tax=Kordia aestuariivivens TaxID=2759037 RepID=UPI00165541A0) HSP 1 Score: 98.2 bits (243), Expect = 2.200e-18 Identity = 76/295 (25.76%), Postives = 112/295 (37.97%), Query Frame = 1
Query: 1 RSLVVGDVNGDGYSDIVVPFGYM---VAWYQSETGLGFSEANDISGSG---AEWTEIADFDGDDDIDVVACSYGGDRVTWYENTDGQGTFSVGFDITTTANNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSAKDIHVLNPEENSVAYRSSYA-CVAAVDLDNDEDLDLVASSVGSDEISWFENMDGEGTFSAANIVGIVTPGTVKVIAADLDDDGDLDVVAASLEPGSGSVTWYEN 864
+S+ D++GDG D + G +AW+++ G G I + AE D DGD DIDV++ SY +++ WYENTDGQGTF ITT A+N ++ Y + +A V A D+D D D+D++++S G D+I+W+EN DG+G F ++ V A DLD DGD+DV++AS + WYEN
Sbjct: 395 KSVYAADIDGDGDLDAISGSGGSFGNIAWFENTDGQGSYGPQKIITTDIDDAESVFAIDLDGDGDIDVLSASYDDNKIAWYENTDGQGTFGPQQIITTGASNAESVYAADLDGDGDMDIVSTYSTISSVVWFENTDGQGNFGA---------------------------------------------------------RQTITYNADFAQAVYAEDIDGDGDMDILSASSGDDKIAWYENTDGQGNFGTQQVISTNADSASSVYAIDLDGDGDIDVLSASR--ADDKIAWYEN 630 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig86.19981.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig86.19981.1 >prot_F-serratus_M_contig86.19981.1 ID=prot_F-serratus_M_contig86.19981.1|Name=mRNA_F-serratus_M_contig86.19981.1|organism=Fucus serratus male|type=polypeptide|length=391bp RSLVVGDVNGDGYSDIVVPFGYMVAWYQSETGLGFSEANDISGSGAEWTEback to top mRNA from alignment at F-serratus_M_contig86:343309..347533+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig86.19981.1 ID=mRNA_F-serratus_M_contig86.19981.1|Name=mRNA_F-serratus_M_contig86.19981.1|organism=Fucus serratus male|type=mRNA|length=4225bp|location=Sequence derived from alignment at F-serratus_M_contig86:343309..347533+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig86:343309..347533+ >mRNA_F-serratus_M_contig86.19981.1 ID=mRNA_F-serratus_M_contig86.19981.1|Name=mRNA_F-serratus_M_contig86.19981.1|organism=Fucus serratus male|type=CDS|length=2346bp|location=Sequence derived from alignment at F-serratus_M_contig86:343309..347533+ (Fucus serratus male)back to top |