mRNA_F-serratus_M_contig86.19979.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig86.19979.1
Unique NamemRNA_F-serratus_M_contig86.19979.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig86.19979.1 vs. uniprot
Match: D7FHU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHU4_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 1.030e-26
Identity = 54/93 (58.06%), Postives = 65/93 (69.89%), Query Frame = 1 
Query:    1 MVVGRRRSFGVRG--EDALVTDIYEEPARGMPNVWCMTVNNTICMRMVGRCGWGTWADSLRGGQQLGSRLGCGGWILTTATRCQTLKVRNIKS 273
            MVVGRRRSFG R   +D LVTDIY+EPARGMPN+WCMTVNNT C+R+VGRCGWGTW  +      + +         T ATRCQTL+   ++S
Sbjct:    1 MVVGRRRSFGERENKKDGLVTDIYDEPARGMPNLWCMTVNNT-CVRLVGRCGWGTWRIANGVDYDVVAAWDAKDGYSTPATRCQTLQDGKLRS 92
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig86.19979.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FHU4_ECTSI1.030e-2658.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig86contigF-serratus_M_contig86:312762..313295 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_000430.1
Exons2
Model size273
Cds size273
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932526.9944386-CDS-F-serratus_M_contig86:312761..3128031622932526.9944386-CDS-F-serratus_M_contig86:312761..312803Fucus serratus maleCDSF-serratus_M_contig86 312762..312803 +
1690964350.3273683-CDS-F-serratus_M_contig86:312761..3128031690964350.3273683-CDS-F-serratus_M_contig86:312761..312803Fucus serratus maleCDSF-serratus_M_contig86 312762..312803 +
1622932527.012065-CDS-F-serratus_M_contig86:313064..3132951622932527.012065-CDS-F-serratus_M_contig86:313064..313295Fucus serratus maleCDSF-serratus_M_contig86 313065..313295 +
1690964350.3404577-CDS-F-serratus_M_contig86:313064..3132951690964350.3404577-CDS-F-serratus_M_contig86:313064..313295Fucus serratus maleCDSF-serratus_M_contig86 313065..313295 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig86.19979.1prot_F-serratus_M_contig86.19979.1Fucus serratus malepolypeptideF-serratus_M_contig86 312762..313295 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig86.19979.1

>prot_F-serratus_M_contig86.19979.1 ID=prot_F-serratus_M_contig86.19979.1|Name=mRNA_F-serratus_M_contig86.19979.1|organism=Fucus serratus male|type=polypeptide|length=91bp
MVVGRRRSFGVRGEDALVTDIYEEPARGMPNVWCMTVNNTICMRMVGRCG
WGTWADSLRGGQQLGSRLGCGGWILTTATRCQTLKVRNIKS
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mRNA from alignment at F-serratus_M_contig86:312762..313295+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig86.19979.1 ID=mRNA_F-serratus_M_contig86.19979.1|Name=mRNA_F-serratus_M_contig86.19979.1|organism=Fucus serratus male|type=mRNA|length=534bp|location=Sequence derived from alignment at F-serratus_M_contig86:312762..313295+ (Fucus serratus male)
ATGGTTGTGGGCAGGAGGAGATCCTTTGGCGTAAGAGGTGAGGTACTTGA
CGAAATGTCCGTCGCGCGTGGTTTCGCGTTTCATCTTTCTCCAGTACACG
CCCGGTGTCTCGAGAAACAACATTCGCACACTCGTCCTAAACTCTAGCAT
GTGTCGGAGCTGCGGCCGTTTTGAGTGCCAACGTGAAAACATGCTTTCTC
CCGTGGATTCCCGATGTGTCGAGAAGCAACATACGTACACTCGGCCTAAA
CTCTAGGTCCGCCCCACTCAATCGCGCAACTTCCAACACAAGAAAATAAA
TAGGATGCGCTGGTGACGGATATCTACGAGGAGCCGGCGAGGGGAATGCC
AAACGTGTGGTGCATGACGGTCAACAACACAATATGTATGAGAATGGTGG
GGAGGTGTGGCTGGGGGACGTGGGCGGATAGCTTACGGGGTGGACAACAA
TTGGGCAGCCGCTTGGGATGCGGAGGATGGATACTAACAACTGCAACTCG
TTGCCAAACCTTGAAGGTGAGAAATATAAAATCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig86:312762..313295+

>mRNA_F-serratus_M_contig86.19979.1 ID=mRNA_F-serratus_M_contig86.19979.1|Name=mRNA_F-serratus_M_contig86.19979.1|organism=Fucus serratus male|type=CDS|length=546bp|location=Sequence derived from alignment at F-serratus_M_contig86:312762..313295+ (Fucus serratus male)
ATGGTTGTGGGCAGGAGGAGATCCTTTGGCGTAAGAGGTGAGATGGTTGT
GGGCAGGAGGAGATCCTTTGGCGTAAGAGGTGAGGATGCGCTGGTGACGG
ATATCTACGAGGAGCCGGCGAGGGGAATGCCAAACGTGTGGTGCATGACG
GTCAACAACACAATATGTATGAGAATGGTGGGGAGGTGTGGCTGGGGGAC
GTGGGCGGATAGCTTACGGGGTGGACAACAATTGGGCAGCCGCTTGGGAT
GCGGAGGATGGATACTAACAACTGCAACTCGTTGCCAAACCTTGAAGGTG
AGAAATATAAAATCGGATGCGCTGGTGACGGATATCTACGAGGAGCCGGC
GAGGGGAATGCCAAACGTGTGGTGCATGACGGTCAACAACACAATATGTA
TGAGAATGGTGGGGAGGTGTGGCTGGGGGACGTGGGCGGATAGCTTACGG
GGTGGACAACAATTGGGCAGCCGCTTGGGATGCGGAGGATGGATACTAAC
AACTGCAACTCGTTGCCAAACCTTGAAGGTGAGAAATATAAAATCG
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