mRNA_F-serratus_M_contig86.19972.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig86.19972.1
Unique NamemRNA_F-serratus_M_contig86.19972.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig86.19972.1 vs. uniprot
Match: A0A6V1PLK3_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PLK3_HETAK)

HSP 1 Score: 60.5 bits (145), Expect = 1.150e-7
Identity = 36/89 (40.45%), Postives = 51/89 (57.30%), Query Frame = 1 
Query:   91 VAAETKATETKKN----WDGNSWPAENERRKAVPADTKDWEMENTHVVVWEDRPNPTADLTWWENYAPSKEEIDAAAQGFNWS--EKWF 339
            V ++ K   T+ N    W G+  P  N +RK +  D   W   +  V V+ED+PNPT    WWE Y P++EEI+AAAQG+++   EKW 
Sbjct:   30 VQSQCKKPSTRSNMVMKWPGDRPPKTNPKRKELLMDAS-WARADERVDVFEDKPNPT--YPWWETYFPTEEEIEAAAQGYDFENPEKWL 115
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig86.19972.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6V1PLK3_HETAK1.150e-740.45Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig86contigF-serratus_M_contig86:136874..141177 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-25_001450.1
Exons4
Model size885
Cds size393
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig86.19972.1prot_F-serratus_M_contig86.19972.1Fucus serratus malepolypeptideF-serratus_M_contig86 136874..140685 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932525.9020588-CDS-F-serratus_M_contig86:136873..1369191622932525.9020588-CDS-F-serratus_M_contig86:136873..136919Fucus serratus maleCDSF-serratus_M_contig86 136874..136919 +
1690964349.8258703-CDS-F-serratus_M_contig86:136873..1369191690964349.8258703-CDS-F-serratus_M_contig86:136873..136919Fucus serratus maleCDSF-serratus_M_contig86 136874..136919 +
1622932525.9157588-CDS-F-serratus_M_contig86:138326..1385021622932525.9157588-CDS-F-serratus_M_contig86:138326..138502Fucus serratus maleCDSF-serratus_M_contig86 138327..138502 +
1690964349.8387313-CDS-F-serratus_M_contig86:138326..1385021690964349.8387313-CDS-F-serratus_M_contig86:138326..138502Fucus serratus maleCDSF-serratus_M_contig86 138327..138502 +
1622932525.9357686-CDS-F-serratus_M_contig86:138977..1390491622932525.9357686-CDS-F-serratus_M_contig86:138977..139049Fucus serratus maleCDSF-serratus_M_contig86 138978..139049 +
1690964349.8487885-CDS-F-serratus_M_contig86:138977..1390491690964349.8487885-CDS-F-serratus_M_contig86:138977..139049Fucus serratus maleCDSF-serratus_M_contig86 138978..139049 +
1622932525.9666233-CDS-F-serratus_M_contig86:140586..1406851622932525.9666233-CDS-F-serratus_M_contig86:140586..140685Fucus serratus maleCDSF-serratus_M_contig86 140587..140685 +
1690964349.8583956-CDS-F-serratus_M_contig86:140586..1406851690964349.8583956-CDS-F-serratus_M_contig86:140586..140685Fucus serratus maleCDSF-serratus_M_contig86 140587..140685 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932525.9873493-UTR-F-serratus_M_contig86:140685..1411771622932525.9873493-UTR-F-serratus_M_contig86:140685..141177Fucus serratus maleUTRF-serratus_M_contig86 140686..141177 +
1690964349.870178-UTR-F-serratus_M_contig86:140685..1411771690964349.870178-UTR-F-serratus_M_contig86:140685..141177Fucus serratus maleUTRF-serratus_M_contig86 140686..141177 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig86.19972.1

>prot_F-serratus_M_contig86.19972.1 ID=prot_F-serratus_M_contig86.19972.1|Name=mRNA_F-serratus_M_contig86.19972.1|organism=Fucus serratus male|type=polypeptide|length=131bp
MGFVATTEAFVVSSSAGVRCRSQRRQQTQEVAAETKATETKKNWDGNSWP
AENERRKAVPADTKDWEMENTHVVVWEDRPNPTADLTWWENYAPSKEEID
AAAQGFNWSEKWFESSETEDSPATSDATDE*
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mRNA from alignment at F-serratus_M_contig86:136874..141177+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig86.19972.1 ID=mRNA_F-serratus_M_contig86.19972.1|Name=mRNA_F-serratus_M_contig86.19972.1|organism=Fucus serratus male|type=mRNA|length=4304bp|location=Sequence derived from alignment at F-serratus_M_contig86:136874..141177+ (Fucus serratus male)
ATGGGCTTCGTGGCCACCACGGAGGCGTTCGTGGTTTCCTCCTCGGGTGA
GAAGGAATCCCACTTCGTTTTTTTCTGGGTGGTAGGGGTGATATGGAATA
GTATCCAGTTCGTCGTCGTGTCGCTGCCCTTTCGACGTACAGAAAAGCTC
GGAGGCGAGACAAGCCTTCGACCGCTTCCTTGAAACAATCGTTTGACCTT
CGAAGTGAAGCCGTGGCAAATGGCGCGGGTGCTGGTCAAGAGTTTGGAGA
CATAGCACCTCCTGAACGAATAGCCTACGATGAGATCCCCTGTGCCATGT
CATATTTGCTTTGAAGCGTCACGACTGAGGAATCACTACCCACTCTTGAA
GCCTCACATTACCCGCAGGAAGACGTTGGGGGGCTACTTCACCCAATTTT
CGGTGGGCTTCGAGTATGTATGTATGGACATCGCTTATAGCAGAGTATGG
ATCACTCGGGTGAGGTCACCAGTCCTATTTGAGGTCAGCTGAACAGGGAA
AATGTGTTTTCGCTATCCCCGTTCGCGTCTACGAATTTCATCTCGCGAGA
CGGGTTCGGCAGTCCCATCTCGCGTCAGCCTGCTCATCTCCATACTCAGG
CTGAGTCTGGTCCTTACTTACGAGATTTCTCCCGATTCTCGCTGCAGCGT
CCATTTATTTATGTATAACCGCTATACGCCATCGAGTCAGTCCCGATTTA
TCGGGTCACGCAATTGCGTACCGATGGCGTTCACTGCCGAGAGTCCGCCG
GCGCAGGGCCAGTAAACCTCAAGGTAGTTCCCAACGAGTGCTGCCTTGGC
AGGTCACCATAGACGAATAAATCTGCGCCTCTCTTTCCCACACCCACTAC
TGGTATGAAGTGGTCGTGTTGAAAGTACCACACGAAGCGTCCGTCCGTGC
CCGTGCCGCCTTTCGATTTCTCCTCAAGCACACAAACAGTGGTTTAAAAT
CGATAAGAGAAAGTGGGGCGGGGAGGGGGATTGATGAATGTAGACTGAAT
TCCGCGGCAGATCACCCGCTTTGTAAAGCCTTTAACATATACTGTAGCGC
CTATTTTTACTTGTTCTGTTGTCCCCCCCCCCCCCCATAGGTTTGTATAT
ATGACGGACGACCTAAACAGTATCTGCGCGTTGTGAGTATTTGCCCGAGC
GACTGAACTCCTTCCTTCTTGCCTCGTCTTTTCATCTCTTCGTTCTTTCG
ACGCAAGTTTTCTCGACGTACGCGCGCGGTTTTACGCGGCGCACGGTCTC
TCTCGTTACCCTTGCCCCCGCTCTCATGCACACAACGGTAACCGTTCTCC
TTTCAATGTCATCCGTTTTGTTCGGTTTCGTCTCGTTCTATTACTTCCGT
TTCATTTGTTTGCGTTTTCGCTCCGTTTCGCTCCGTTTCGCTTCGTTCCT
TTCCGGGTCGCCTCATACCGTTGGTGTTGATTTGTTGTTTCGCCGCCGCA
CAGCCGGAGTACGGTGTCGGTCGCAGCGACGGCAGCAGACGCAAGAAGTT
GCCGCGGAGACAAAAGCGACCGAGACGAAGAAAAATTGGGATGGCAACAG
CTGGCCTGCCGAGAACGAGAGACGCAAGGCTGTGCCCGCGGACACCAAAG
ATTGGGAAATGGAAAATACCCACGTTGTGGTACGTTATTTGCTGCATCGG
ACCCTATTTCATCCTATGATGCGGTTTCGCGAAGCTGGAGTTCGTAGAGA
AGCGGGGAGTGTTTGAAAGGGCGCGGATGGGCTTAAAAGGGTGTCTATTT
GGTACAGCCCGGAGCTCTCCCCCCAACAATTTGCGGGTGTGGGTTTGGTT
GTGTCGGTGTGAGTGGATAAAGCTGTGTGTGTGAGGGGGGGAGTTTTCAT
CCATGTGGTCTTGTGTCGATGCCCGCATATGTGGCGAATTTTCTAGTTGA
AAAAATACTCGGTTTGAAACTGGAGATGTGCGTTTGCATGAAGGTTTCGG
CATAGCGTTCTTATAAATGGGTATTCCTAGCGAGCTTGACGATCGCACAG
AAATATGGAGAGCGCATTTCCCCTCCTCGACTCAACTACGCACCGCACGC
TCACGCGCACCCCCCTTCCCCCGACCTCCTCCTGTCTGCCTCCTGTCTGC
ACAGGTGTGGGAGGACCGCCCCAACCCTACAGCCGATTTGACGTGGTGGG
AGAACTACGCTCCAAGCAAGGAAGAGGTGATATCGTAACCTGGCTATCCT
GCTGCTTCCATTGATGTCGCCACATACGATCTTGGTTGCGCGTTTGCCGT
CGTCACCCGACGGCCAACATGGTTCCTTGCTTGAAACTTAAGATTGAAAC
CCGGGCGATTCGTTTCGATATACGCGCAGATTTTATGTGCTACAAATGGG
GACCGCGGATCGCACCGTTGGTACACGGGAAATACCCTGAAAACTAAGCG
TAAAACTGTACCGGTACTCGGCACACCCGACATAGTATCATGATCTTGAC
GTCACCTGTTGCCAGTCACGCCGCAAGTTCTGGATTTTTGGAAAGCTTAT
ATCGCGAGGTGTACGTGAATTTCACTGCTTGTGCGTGTGTGGTTACCTGC
CGAGGGGGGCGGGGACAGGAGAGGGGTGTTTTTTCCATGGCGCGCCTGGG
CAATTCCTTTACATCTGTCTATGCACAGCTGGTATGGACGATAAAAGTCC
ACTCACTTGGCTTGGTTGGTCATACCGCTCTACAGTTCGACTCAAATCGT
GTTTGGCGACTCCGCCTACATCGAAGGACTCGTAGGTCTAGCAAGGCACC
AAGGCGCTGTGTTCCCGCGTAGAAGCAAATTACTTGAACCCCGAGAATAT
CAACTCGGGGTTTGGGTTCTCATGTTCACGAAATCCTAATATCAACGGAA
GAAAAACCCAACAGAATTGCCAGCCCGACGATATACGCGGTCGCGCTTGT
ATTACTGATCGTGCGAAAGGATATTTAGGGGGTTCGGGGGTGGCGTTTCT
GGTTTTGTCCCTTGGAATGTGTTTCAGTTCCCGCTGGCCAACCCTACCCT
AACGCTAACCCCTACCCCAGCTGACCGCGTGGTTCAATTCATGGCTGGCG
CTTGGTCATAGTTTTGTGTGTGTGCCGCGCGCGCGCTGGTGCGCATCTCT
ACCCAATCAGGAGTCAGCAAATTAAGAACTAAAGATTCTTTCGCATCTCT
ACCCAATCAAGAGTCAGTAAATTAAGAACTAACGATCCTTTCGCACGGAT
GGTAATGGTATTACTGATCGTGCGAAAGGATCTTTAGGGGGTTCGGGGGT
GGCGTTTCTGGTTTTGTCCCTTCGAATGTGTTTCAATTCCCGTTGGCTAA
CCCGACCCTAATGTCAACGCTAACCCAGACCCCCTACCCCAGCTGACCGC
GTGGTTTCAATTCATGGCTGGCGCTTGGTCATAGTTTTGTGTGCATGCCG
CACGCGCGCTGGTGATCATCTCTACCCAATCAGGAGTCAGCAAATTAAGA
ACTAAAGAtccttccgcATTACCCAATCAGGAGTCAGCAAATTAAGAACT
AAAGATCCTTTCACACGGATGATATATGTACTGAAGCGGTCTGAGAAAAA
ACGAGACTGTGAGAAGTTGACGGCCCTCCGACCAACCAAACCAAGTGGAG
TGTTTTTTCCCCCACGCTCACGCCTCCATTAGGCATCCAACCGTTTCTCA
TGCTTCGTCCATCGTCTTTCGTTGCCTCTACCTTATTGTTTGTGTTTCGT
GTGCTGGGTGCAGATTGATGCCGCGGCGCAGGGGTTCAACTGGTCAGAGA
AGTGGTTTGAGTCCTCCGAAACTGAGGACTCCCCAGCCACCAGTGACGCG
ACCGATGAATAGGATCCATCCTTCAGCTCAACCCCGACGTTTTGATACCC
TTGTTTTTCGCCGCTTTGGTAGGTTGATGTGTAAACATTTTCACATCAGT
CTAGGGGTCTCTCAGTATTTTTTGTTGCTTTTACCTGTCAAGGCTATATA
ATGAAAAACCCCTCCGTGGGTGGGGAATGCCGCATTTCTTCAACGATACC
TCGTATCAATAGTAGGTGGTGGTGTGAAACAGATTTGTGTCCCGACGGAA
GAGGTTGAATTGGACTTGATGACGCATTTATCCCTACTTCTCTGTCTCTC
TCCTGCACGCATAATGCTCAAGAGAAAACGAAAAACAGAACATATCTGGA
TTCCCTCCTTTATATCAGGCTAAATAAATAATTAGGTGTCTTCTTTCCAG
GAGGGATGTTTTGTGTTTTGTTGCCCCCCAAGTGTGCAGCGCCAGGCGAA
TCCACAAACATGTTGAGACAAAAGAATGGTCGCCTATCGCTACGAATCGT
TGGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig86:136874..141177+

>mRNA_F-serratus_M_contig86.19972.1 ID=mRNA_F-serratus_M_contig86.19972.1|Name=mRNA_F-serratus_M_contig86.19972.1|organism=Fucus serratus male|type=CDS|length=786bp|location=Sequence derived from alignment at F-serratus_M_contig86:136874..141177+ (Fucus serratus male)
ATGGGCTTCGTGGCCACCACGGAGGCGTTCGTGGTTTCCTCCTCGGATGG
GCTTCGTGGCCACCACGGAGGCGTTCGTGGTTTCCTCCTCGGCCGGAGTA
CGGTGTCGGTCGCAGCGACGGCAGCAGACGCAAGAAGTTGCCGCGGAGAC
AAAAGCGACCGAGACGAAGAAAAATTGGGATGGCAACAGCTGGCCTGCCG
AGAACGAGAGACGCAAGGCTGTGCCCGCGGACACCAAAGATTGGGAAATG
GAAAATACCCACGTTGTGCCGGAGTACGGTGTCGGTCGCAGCGACGGCAG
CAGACGCAAGAAGTTGCCGCGGAGACAAAAGCGACCGAGACGAAGAAAAA
TTGGGATGGCAACAGCTGGCCTGCCGAGAACGAGAGACGCAAGGCTGTGC
CCGCGGACACCAAAGATTGGGAAATGGAAAATACCCACGTTGTGGTGTGG
GAGGACCGCCCCAACCCTACAGCCGATTTGACGTGGTGGGAGAACTACGC
TCCAAGCAAGGAAGAGGTGTGGGAGGACCGCCCCAACCCTACAGCCGATT
TGACGTGGTGGGAGAACTACGCTCCAAGCAAGGAAGAGATTGATGCCGCG
GCGCAGGGGTTCAACTGGTCAGAGAAGTGGTTTGAGTCCTCCGAAACTGA
GGACTCCCCAGCCACCAGTGACGCGACCGATGAATAGATTGATGCCGCGG
CGCAGGGGTTCAACTGGTCAGAGAAGTGGTTTGAGTCCTCCGAAACTGAG
GACTCCCCAGCCACCAGTGACGCGACCGATGAATAG
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