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Homology
BLAST of mRNA_F-serratus_M_contig127.2000.1 vs. uniprot
Match: D7FK60_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FK60_ECTSI) HSP 1 Score: 61.6 bits (148), Expect = 5.540e-6 Identity = 31/52 (59.62%), Postives = 35/52 (67.31%), Query Frame = 2
Query: 671 RNPDEGKRFVREVKRLGEAGDWREAISLLRAAEKDGRAVNQIMYNATIAALS 826
R ++GKRFVR +RLG G W +SLLR AE DG VN IMYNA I ALS
Sbjct: 90 RPAEDGKRFVRVAQRLGGQGKWERVLSLLRQAEGDGAVVNHIMYNAAIGALS 141
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 70.9 |
| Seed ortholog evalue | 2.9e-09 |
| Seed eggNOG ortholog | 2880.D7FIX3 |
| Hectar predicted targeting category | mitochondrion |
| EggNOG free text desc. | endonuclease activity |
| EggNOG OGs | KOG4197@1,KOG4197@2759 |
| Ec32 ortholog description | Tetratricopeptide-like helical domain |
| Ec32 ortholog | Ec-04_005710.1 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 2 |
| Model size | 2576 |
| Cds size | 2226 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622929199.748682-UTR-F-serratus_M_contig127:344125..344312 | 1622929199.748682-UTR-F-serratus_M_contig127:344125..344312 | Fucus serratus male | UTR | F-serratus_M_contig127 344126..344312 - |
| 1690962747.2197673-UTR-F-serratus_M_contig127:344125..344312 | 1690962747.2197673-UTR-F-serratus_M_contig127:344125..344312 | Fucus serratus male | UTR | F-serratus_M_contig127 344126..344312 - |
| 1622929199.7880514-UTR-F-serratus_M_contig127:347115..347278 | 1622929199.7880514-UTR-F-serratus_M_contig127:347115..347278 | Fucus serratus male | UTR | F-serratus_M_contig127 347116..347278 - |
| 1690962747.2618225-UTR-F-serratus_M_contig127:347115..347278 | 1690962747.2618225-UTR-F-serratus_M_contig127:347115..347278 | Fucus serratus male | UTR | F-serratus_M_contig127 347116..347278 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622929199.7665882-CDS-F-serratus_M_contig127:344312..345344 | 1622929199.7665882-CDS-F-serratus_M_contig127:344312..345344 | Fucus serratus male | CDS | F-serratus_M_contig127 344313..345344 - |
| 1690962747.2334518-CDS-F-serratus_M_contig127:344312..345344 | 1690962747.2334518-CDS-F-serratus_M_contig127:344312..345344 | Fucus serratus male | CDS | F-serratus_M_contig127 344313..345344 - |
| 1622929199.7769413-CDS-F-serratus_M_contig127:345921..347115 | 1622929199.7769413-CDS-F-serratus_M_contig127:345921..347115 | Fucus serratus male | CDS | F-serratus_M_contig127 345922..347115 - |
| 1690962747.2446153-CDS-F-serratus_M_contig127:345921..347115 | 1690962747.2446153-CDS-F-serratus_M_contig127:345921..347115 | Fucus serratus male | CDS | F-serratus_M_contig127 345922..347115 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig127.2000.1 >prot_F-serratus_M_contig127.2000.1 ID=prot_F-serratus_M_contig127.2000.1|Name=mRNA_F-serratus_M_contig127.2000.1|organism=Fucus serratus male|type=polypeptide|length=742bp
MISVNSTLNKHILSRRWSGAAGSLVRRPRKAATSTPSNEALRLLLFRQTV NHCCCTSSLTSACSPEGTAHRPTGESDDYGRHNAVDRTGSLPTGGAEHHA PTTAVARTSPDEAPRRPSTATSQPLQQNQLPSHRWRHNSAALGAMGNKNA HSRKWNGTRRGVPASRGKFRNPDEGKRFVREVKRLGEAGDWREAISLLRA AEKDGRAVNQIMYNATIAALSRSGRWQEAMSILRSMEANGVERDVRGFAA TMVACREAGEWERAVGLLEEMKAEGIAPNFPTFCVALSACSRKGQWRRAL SLLEVDMASAGVEPNLKAWQIVLDACVVAGRGEEAAAFLSRMRAAGVEPN VSCYERVIYATAKKGNWELALQMLEDMGDAGLSPSGRSFAAAMKTCVEAQ QWELVQDLLESMKQAGIPRDTWVFNICIDAYAKSGNWERAVGVLRNDMPE AGVKPDVASWASAMHAAARAGEWTLALSLWDEMRRGGGRQAAKPNMYTYN IAIDACGKLGLVDRAMALLEKIRSVGQVPNMITYNTAIDVCARSRRGERA LRLLREMRSAGVEPDVVSYTSAISAFIEARGEEERELGLGLLEEMKAAGV RPTNFTYSAAITLCSNAGDWERGLALFDELKESGQIPNSASFTAAIDSCG VGGCWETALDLVEEMEATTGVAPTLLAFNAAIRSCCRGGKWDLGVSLLKR MRQAHVEPDIASMNALIRGLRDRTQIVRPKEDEDLHHRVLP* back to topmRNA from alignment at F-serratus_M_contig127:344126..347278- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig127.2000.1 ID=mRNA_F-serratus_M_contig127.2000.1|Name=mRNA_F-serratus_M_contig127.2000.1|organism=Fucus serratus male|type=mRNA|length=3153bp|location=Sequence derived from alignment at F-serratus_M_contig127:344126..347278- (Fucus serratus male) TCCTCGACCTTCTGTTGTTGTGTTGTGTGCTGTGTGCTGAATTCATCAGC
TACATTACGAGCATCCACACCGTCCCGGGGAATCATTGCGTCGAAGCGTT
CAGGTTTTTGTGTGCTGCGTCATTTTGACAAGCAAGATCTACATGCCGTA
AGCGCCGCGTGGAATGATTTCTGTGAACTCCACCCTGAACAAACATATAT
TGTCAAGACGATGGAGTGGAGCAGCCGGTAGTTTGGTTCGACGACCGCGA
AAGGCCGCAACATCAACTCCGTCGAACGAAGCGCTGCGCTTGTTGCTCTT
CCGGCAAACAGTCAACCACTGCTGCTGCACTTCTTCCTTAACCTCAGCGT
GCAGTCCCGAAGGAACTGCTCATCGACCAACTGGAGAATCGGACGACTAT
GGGCGACACAATGCCGTCGATAGAACGGGATCGCTGCCGACTGGAGGCGC
CGAACATCACGCACCCACCACGGCAGTGGCTCGAACGAGCCCCGATGAGG
CACCACGAAGACCCTCGACTGCAACGTCGCAACCATTGCAGCAGAACCAG
CTGCCGTCCCATCGCTGGCGTCACAATTCGGCGGCTCTCGGAGCGATGGG
GAACAAGAATGCTCACTCTCGTAAGTGGAACGGTACCCGTCGCGGCGTTC
CAGCATCGCGCGGAAAGTTCCGAAATCCCGACGAAGGGAAGCGTTTCGTT
CGTGAGGTGAAGCGCCTTGGAGAAGCAGGGGACTGGCGGGAAGCTATTTC
GCTTCTGCGGGCGGCGGAGAAAGACGGTCGCGCTGTAAACCAGATCATGT
ACAACGCCACCATCGCAGCACTCTCAAGGAGTGGGCGTTGGCAGGAGGCT
ATGTCGATTCTCCGTTCGATGGAGGCGAACGGTGTGGAGAGAGACGTGAG
GGGGTTCGCGGCGACGATGGTGGCCTGCAGGGAGGCCGGCGAGTGGGAAC
GGGCCGTCGGCCTACTCGAAGAAATGAAGGCGGAGGGCATCGCGCCTAAC
TTTCCTACGTTCTGCGTAGCACTTTCTGCCTGCTCCAGGAAGGGGCAGTG
GCGCCGCGCGCTTTCCCTCCTCGAGGTGGACATGGCTTCCGCGGGAGTCG
AGCCGAACCTCAAGGCGTGGCAGATCGTTCTGGACGCGTGCGTGGTCGCC
GGTCGAGGGGAAGAAGCCGCCGCTTTCCTGTCCCGTATGCGGGCGGCCGG
GGTTGAGCCGAACGTGTCGTGCTACGAGAGGGTGATCTACGCCACCGCCA
AGAAGGGGAATTGGGAGCTGGCCCTGCAGATGCTGGAGGACATGGGTGAC
GCAGGGTTGAGTCCGAGTGGGAGGAGCTTCGCGGCAGCGATGAAGACTTG
CGTGGAGGTCGGTAGGAAACAGAAGAGGGTAACCTCGCACTTTTTTTTGC
CTTCTCGTCGTCGTATCTCGGCCCGACTGCGCCAGACATAGCATGCCTAC
CGTAAGAATCGGAGTCTTGGCACACCCCCTAGACATACTTTCCGGGCTCG
GTTGCCCCACAACCAAGGGGACGTGAACACCGACCGATACGTCTGAAGAA
AGCTCTCGACGAGGTCTTTTGAAAACCGCCCTTTTCGGCATTGGTACCCT
CTTGGTTGTGTAGAAATCGATCCTGGAAAGTCAGTCTAGGAGGTGTGCCA
AGACTCCGATACTTATGGTATACAACAGAGTGTCACAATATTCGCCGCAC
GGTTTCGGCCGGGGTGTGTATGTGTATGTGCACTGAGGATTGGTTCTGAG
GATTGGTTCAGTCTGGCTTTTGTCTCTACAACATGTATATATTCCACAAA
ATACTTCCGCCCCCCCATCCCCTCTACTCCCCACATCATTGCAGTACAGT
AGTTTGTTTTTCGCCCACTACTGCCGTTCTCGAGTTTACTCTATCAATCA
TGCCATCTCTCGCGAAAATATTGACGAACCTCAGGCGCAGCAGTGGGAAC
TCGTCCAGGATCTCCTGGAATCTATGAAGCAGGCCGGGATCCCGCGCGAT
ACCTGGGTTTTCAACATCTGCATTGATGCCTACGCCAAGTCAGGGAACTG
GGAGCGCGCGGTGGGTGTATTGCGGAACGACATGCCTGAGGCGGGAGTGA
AGCCCGACGTTGCGAGCTGGGCTTCTGCGATGCACGCCGCCGCCCGTGCG
GGGGAGTGGACGCTGGCGTTATCCCTTTGGGACGAGATGAGAAGAGGGGG
CGGCAGGCAGGCAGCGAAGCCGAACATGTATACCTACAACATCGCGATCG
ATGCTTGCGGCAAGCTGGGCCTGGTGGACCGGGCGATGGCGCTGCTGGAG
AAGATACGCTCGGTAGGTCAAGTGCCCAACATGATCACGTACAACACAGC
CATCGACGTCTGCGCGAGGTCGAGGCGCGGGGAGCGTGCGCTGCGGCTTC
TACGGGAGATGCGCAGCGCGGGTGTGGAGCCCGACGTTGTATCGTACACG
TCGGCAATATCCGCGTTTATCGAAGCGAGGGGGGAAGAGGAGCGAGAGCT
GGGCCTGGGCCTGCTCGAAGAGATGAAAGCTGCAGGCGTTCGCCCAACCA
ACTTTACGTACTCCGCGGCCATCACCCTGTGCTCGAACGCAGGAGACTGG
GAGCGCGGCTTGGCGCTGTTCGACGAGTTGAAAGAGTCGGGCCAAATACC
GAATAGTGCATCGTTCACGGCCGCGATCGACAGCTGCGGCGTCGGGGGGT
GTTGGGAGACCGCGCTAGATCTAGTGGAAGAGATGGAGGCGACGACGGGG
GTCGCTCCCACTCTGTTGGCGTTCAACGCCGCGATTCGTTCCTGTTGTCG
AGGCGGGAAATGGGACTTAGGTGTGTCGTTGCTGAAGAGGATGAGACAGG
CGCATGTCGAGCCTGATATCGCGAGCATGAACGCGCTCATAAGAGGGCTA
AGGGATAGAACTCAGATTGTTCGGCCGAAGGAAGACGAAGATCTCCACCA
TCGCGTGTTGCCGTAAAGTTCGAGTAGACTTTTTTTCAACGAGTAAGATG
TCAAAATGAACGAAAAAAAAGGTCGAGAGTCCCGAACTCTGAAGGTTTGA
CGACCCTGGTCCGGGTTGTGAATTTTCCAATCTCTCCTGTCCCCGTGAGA
AATTCATCCAACAGTTTTTTTCCTCCTTTTTATTTGGATTACTTTCCCCC
GAA back to topCoding sequence (CDS) from alignment at F-serratus_M_contig127:344126..347278- >mRNA_F-serratus_M_contig127.2000.1 ID=mRNA_F-serratus_M_contig127.2000.1|Name=mRNA_F-serratus_M_contig127.2000.1|organism=Fucus serratus male|type=CDS|length=4452bp|location=Sequence derived from alignment at F-serratus_M_contig127:344126..347278- (Fucus serratus male) ATGATTTCTGTGAACTCCACCCTGAACAAACATATATTGTCAAGACGATG GAGTGGAGCAGCCGGTAGTTTGGTTCGACGACCGCGAAAGGCCGCAACAT CAACTCCGTCGAACGAAGCGCTGCGCTTGTTGCTCTTCCGGCAAACAGTC AACCACTGCTGCTGCACTTCTTCCTTAACCTCAGCGTGCAGTCCCGAAGG AACTGCTCATCGACCAACTGGAGAATCGGACGACTATGGGCGACACAATG CCGTCGATAGAACGGGATCGCTGCCGACTGGAGGCGCCGAACATCACGCA CCCACCACGGCAGTGGCTCGAACGAGCCCCGATGAGGCACCACGAAGACC CTCGACTGCAACGTCGCAACCATTGCAGCAGAACCAGCTGCCGTCCCATC GCTGGCGTCACAATTCGGCGGCTCTCGGAGCGATGGGGAACAAGAATGCT CACTCTCGTAAGTGGAACGGTACCCGTCGCGGCGTTCCAGCATCGCGCGG AAAGTTCCGAAATCCCGACGAAGGGAAGCGTTTCGTTCGTGAGGTGAAGC GCCTTGGAGAAGCAGGGGACTGGCGGGAAGCTATTTCGCTTCTGCGGGCG GCGGAGAAAGACGGTCGCGCTGTAAACCAGATCATGTACAACGCCACCAT CGCAGCACTCTCAAGGAGTGGGCGTTGGCAGGAGGCTATGTCGATTCTCC GTTCGATGGAGGCGAACGGTGTGGAGAGAGACGTGAGGGGGTTCGCGGCG ACGATGGTGGCCTGCAGGGAGGCCGGCGAGTGGGAACGGGCCGTCGGCCT ACTCGAAGAAATGAAGGCGGAGGGCATCGCGCCTAACTTTCCTACGTTCT GCGTAGCACTTTCTGCCTGCTCCAGGAAGGGGCAGTGGCGCCGCGCGCTT TCCCTCCTCGAGGTGGACATGGCTTCCGCGGGAGTCGAGCCGAACCTCAA GGCGTGGCAGATCGTTCTGGACGCGTGCGTGGTCGCCGGTCGAGGGGAAG AAGCCGCCGCTTTCCTGTCCCGTATGCGGGCGGCCGGGGTTGAGCCGAAC GTGTCGTGCTACGAGAGGGTGATCTACGCCACCGCCAAGAAGGGGAATTG GGAGCTGGCCCTGCAGATGCTGGAGGACATGGGTGACGCAGGGTTGAGTC CGAGTGGGAGGAGCTTCGCGGCAGCGATGAAGACTTGCGTGGAGATGATT TCTGTGAACTCCACCCTGAACAAACATATATTGTCAAGACGATGGAGTGG AGCAGCCGGTAGTTTGGTTCGACGACCGCGAAAGGCCGCAACATCAACTC CGTCGAACGAAGCGCTGCGCTTGTTGCTCTTCCGGCAAACAGTCAACCAC TGCTGCTGCACTTCTTCCTTAACCTCAGCGTGCAGTCCCGAAGGAACTGC TCATCGACCAACTGGAGAATCGGACGACTATGGGCGACACAATGCCGTCG ATAGAACGGGATCGCTGCCGACTGGAGGCGCCGAACATCACGCACCCACC ACGGCAGTGGCTCGAACGAGCCCCGATGAGGCACCACGAAGACCCTCGAC TGCAACGTCGCAACCATTGCAGCAGAACCAGCTGCCGTCCCATCGCTGGC GTCACAATTCGGCGGCTCTCGGAGCGATGGGGAACAAGAATGCTCACTCT CGTAAGTGGAACGGTACCCGTCGCGGCGTTCCAGCATCGCGCGGAAAGTT CCGAAATCCCGACGAAGGGAAGCGTTTCGTTCGTGAGGTGAAGCGCCTTG GAGAAGCAGGGGACTGGCGGGAAGCTATTTCGCTTCTGCGGGCGGCGGAG AAAGACGGTCGCGCTGTAAACCAGATCATGTACAACGCCACCATCGCAGC ACTCTCAAGGAGTGGGCGTTGGCAGGAGGCTATGTCGATTCTCCGTTCGA TGGAGGCGAACGGTGTGGAGAGAGACGTGAGGGGGTTCGCGGCGACGATG GTGGCCTGCAGGGAGGCCGGCGAGTGGGAACGGGCCGTCGGCCTACTCGA AGAAATGAAGGCGGAGGGCATCGCGCCTAACTTTCCTACGTTCTGCGTAG CACTTTCTGCCTGCTCCAGGAAGGGGCAGTGGCGCCGCGCGCTTTCCCTC CTCGAGGTGGACATGGCTTCCGCGGGAGTCGAGCCGAACCTCAAGGCGTG GCAGATCGTTCTGGACGCGTGCGTGGTCGCCGGTCGAGGGGAAGAAGCCG CCGCTTTCCTGTCCCGTATGCGGGCGGCCGGGGTTGAGCCGAACGTGTCG TGCTACGAGAGGGTGATCTACGCCACCGCCAAGAAGGGGAATTGGGAGCT GGCCCTGCAGATGCTGGAGGACATGGGTGACGCAGGGTTGAGTCCGAGTG GGAGGAGCTTCGCGGCAGCGATGAAGACTTGCGTGGAGGCGCAGCAGTGG GAACTCGTCCAGGATCTCCTGGAATCTATGAAGCAGGCCGGGATCCCGCG CGATACCTGGGTTTTCAACATCTGCATTGATGCCTACGCCAAGTCAGGGA ACTGGGAGCGCGCGGTGGGTGTATTGCGGAACGACATGCCTGAGGCGGGA GTGAAGCCCGACGTTGCGAGCTGGGCTTCTGCGATGCACGCCGCCGCCCG TGCGGGGGAGTGGACGCTGGCGTTATCCCTTTGGGACGAGATGAGAAGAG GGGGCGGCAGGCAGGCAGCGAAGCCGAACATGTATACCTACAACATCGCG ATCGATGCTTGCGGCAAGCTGGGCCTGGTGGACCGGGCGATGGCGCTGCT GGAGAAGATACGCTCGGTAGGTCAAGTGCCCAACATGATCACGTACAACA CAGCCATCGACGTCTGCGCGAGGTCGAGGCGCGGGGAGCGTGCGCTGCGG CTTCTACGGGAGATGCGCAGCGCGGGTGTGGAGCCCGACGTTGTATCGTA CACGTCGGCAATATCCGCGTTTATCGAAGCGAGGGGGGAAGAGGAGCGAG AGCTGGGCCTGGGCCTGCTCGAAGAGATGAAAGCTGCAGGCGTTCGCCCA ACCAACTTTACGTACTCCGCGGCCATCACCCTGTGCTCGAACGCAGGAGA CTGGGAGCGCGGCTTGGCGCTGTTCGACGAGTTGAAAGAGTCGGGCCAAA TACCGAATAGTGCATCGTTCACGGCCGCGATCGACAGCTGCGGCGTCGGG GGGTGTTGGGAGACCGCGCTAGATCTAGTGGAAGAGATGGAGGCGACGAC GGGGGTCGCTCCCACTCTGTTGGCGTTCAACGCCGCGATTCGTTCCTGTT GTCGAGGCGGGAAATGGGACTTAGGTGTGTCGTTGCTGAAGAGGATGAGA CAGGCGCATGTCGAGCCTGATATCGCGAGCATGAACGCGCTCATAAGAGG GCTAAGGGATAGAACTCAGATTGTTCGGCCGAAGGAAGACGAAGATCTCC ACCATCGCGTGTTGCCGTAAGCGCAGCAGTGGGAACTCGTCCAGGATCTC CTGGAATCTATGAAGCAGGCCGGGATCCCGCGCGATACCTGGGTTTTCAA CATCTGCATTGATGCCTACGCCAAGTCAGGGAACTGGGAGCGCGCGGTGG GTGTATTGCGGAACGACATGCCTGAGGCGGGAGTGAAGCCCGACGTTGCG AGCTGGGCTTCTGCGATGCACGCCGCCGCCCGTGCGGGGGAGTGGACGCT GGCGTTATCCCTTTGGGACGAGATGAGAAGAGGGGGCGGCAGGCAGGCAG CGAAGCCGAACATGTATACCTACAACATCGCGATCGATGCTTGCGGCAAG CTGGGCCTGGTGGACCGGGCGATGGCGCTGCTGGAGAAGATACGCTCGGT AGGTCAAGTGCCCAACATGATCACGTACAACACAGCCATCGACGTCTGCG CGAGGTCGAGGCGCGGGGAGCGTGCGCTGCGGCTTCTACGGGAGATGCGC AGCGCGGGTGTGGAGCCCGACGTTGTATCGTACACGTCGGCAATATCCGC GTTTATCGAAGCGAGGGGGGAAGAGGAGCGAGAGCTGGGCCTGGGCCTGC TCGAAGAGATGAAAGCTGCAGGCGTTCGCCCAACCAACTTTACGTACTCC GCGGCCATCACCCTGTGCTCGAACGCAGGAGACTGGGAGCGCGGCTTGGC GCTGTTCGACGAGTTGAAAGAGTCGGGCCAAATACCGAATAGTGCATCGT TCACGGCCGCGATCGACAGCTGCGGCGTCGGGGGGTGTTGGGAGACCGCG CTAGATCTAGTGGAAGAGATGGAGGCGACGACGGGGGTCGCTCCCACTCT GTTGGCGTTCAACGCCGCGATTCGTTCCTGTTGTCGAGGCGGGAAATGGG ACTTAGGTGTGTCGTTGCTGAAGAGGATGAGACAGGCGCATGTCGAGCCT GATATCGCGAGCATGAACGCGCTCATAAGAGGGCTAAGGGATAGAACTCA GATTGTTCGGCCGAAGGAAGACGAAGATCTCCACCATCGCGTGTTGCCGT AA back to top
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