mRNA_F-serratus_M_contig86.19976.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig86.19976.1
Unique NamemRNA_F-serratus_M_contig86.19976.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig86.19976.1 vs. uniprot
Match: A0A6H5JFA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFA4_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 4.420e-9
Identity = 31/42 (73.81%), Postives = 35/42 (83.33%), Query Frame = 2 
Query:   68 QPW*DGVSIGVFSLIFSVLELLPEPQYYAAETRANMVTDGEE 193
            + W DGVSIG+FSLIFSVLELL E QYY +E RA+MVT GEE
Sbjct:  389 ETWEDGVSIGIFSLIFSVLELLTELQYYVSEARADMVTGGEE 430
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig86.19976.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JFA4_9PHAE4.420e-973.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig86contigF-serratus_M_contig86:271149..272156 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size449
Cds size447
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932522.2245016-CDS-F-serratus_M_contig86:271148..2713641622932522.2245016-CDS-F-serratus_M_contig86:271148..271364Fucus serratus maleCDSF-serratus_M_contig86 271149..271364 -
1690964348.8242085-CDS-F-serratus_M_contig86:271148..2713641690964348.8242085-CDS-F-serratus_M_contig86:271148..271364Fucus serratus maleCDSF-serratus_M_contig86 271149..271364 -
1622932522.2429974-CDS-F-serratus_M_contig86:271925..2721561622932522.2429974-CDS-F-serratus_M_contig86:271925..272156Fucus serratus maleCDSF-serratus_M_contig86 271926..272156 -
1690964348.835339-CDS-F-serratus_M_contig86:271925..2721561690964348.835339-CDS-F-serratus_M_contig86:271925..272156Fucus serratus maleCDSF-serratus_M_contig86 271926..272156 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig86.19976.1prot_F-serratus_M_contig86.19976.1Fucus serratus malepolypeptideF-serratus_M_contig86 271149..272156 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig86.19976.1

>prot_F-serratus_M_contig86.19976.1 ID=prot_F-serratus_M_contig86.19976.1|Name=mRNA_F-serratus_M_contig86.19976.1|organism=Fucus serratus male|type=polypeptide|length=149bp
WCVYSKSFSSLWFRVFNEAILPAALVRWCVDWGIFTNFLGAGVAPGTPVL
RGRDQGEHGDGWGGSNGRRGGRPRFVRSWSTMHHPPWVDLLGLFMPPSGS
RGLRVHSSKPLPVKFNPETKQASVAGVPNKVRFVRSPYNSMIPVQRTS*
back to top

mRNA from alignment at F-serratus_M_contig86:271149..272156-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig86.19976.1 ID=mRNA_F-serratus_M_contig86.19976.1|Name=mRNA_F-serratus_M_contig86.19976.1|organism=Fucus serratus male|type=mRNA|length=1008bp|location=Sequence derived from alignment at F-serratus_M_contig86:271149..272156- (Fucus serratus male)
TGGTGTGTATACTCGAAGAGTTTCAGCAGTTTGTGGTTTCGCGTGTTCAA
CGAAGCCATCCTTCCCGCAGCCTTGGTAAGATGGTGTGTCGATTGGGGTA
TTTTCACTAATTTTCTCGGTGCTGGAGTTGCTCCCGGAACCCCAGTACTA
CGCGGCAGAGACCAGGGCGAACATGGTGACGGATGGGGAGGAAGCAATGG
ACGCAGAGGGGGCCGACCGCGATTCGTTAGAGTTTAAAGAAAAATGCGAA
CGGCGGCTAAACCTTCTGATCCGCCCCCGGTAGGGGGAAAAACAAACAAA
ACCTTTAGGTGGGCTCAAGGGCTGCAGATACAAAACCTCTTCATGGCATT
TAAACGGGTTCCCCGATGCATATAACATTGGGTCAACAGTATAATGTCGG
GGAGAAGCCCACCGTGATACTGTACACTTACATTAATCGCCATGCAGAGA
CACCAAAAAAAACGGACAAAAAAGTACATCATCAAACAGTAATACAGACG
AATACAGTACACCATTCAGTAATAAAGACGAATACAGTAGTACATAATTA
AAAGAGGACAAGAGGACCATGATGATGCGGAATCTTCAGATCCAAGTACA
CAACAGTATTCACCTGAAAGTAGACGAGCAGCAGTAGGAGATCACACGAG
GAGGTAAGAGGCACGCGGAAAGAACAGGGTTCCTCGCTCCAACTTGTCAT
GGCGACGACGCACAAGTACTCCTCATGCTAAGACTGAGCAATGACCCCGC
GGTGGCCAGGAATACGAAGAAGGAGCACTAGTACATCAAAAGAGTTGGTC
AACCATGCACCATCCGCCTTGGGTAGACTTACTTGGGCTTTTTATGCCCC
CTTCAGGCAGTCGTGGTCTACGCGTACATTCCTCCAAGCCTCTGCCGGTG
AAATTCAATCCCGAAACAAAGCAGGCCAGTGTTGCAGGCGTTCCAAACAA
AGTTCGGTTTGTGCGGAGCCCCTACAACTCCATGATACCAGTACAGAGGA
CGTCATGA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig86:271149..272156-

>mRNA_F-serratus_M_contig86.19976.1 ID=mRNA_F-serratus_M_contig86.19976.1|Name=mRNA_F-serratus_M_contig86.19976.1|organism=Fucus serratus male|type=CDS|length=894bp|location=Sequence derived from alignment at F-serratus_M_contig86:271149..272156- (Fucus serratus male)
TGGTGTGTATACTCGAAGAGTTTCAGCAGTTTGTGGTTTCGCGTGTTCAA
CGAAGCCATCCTTCCCGCAGCCTTGGTAAGATGGTGTGTCGATTGGGGTA
TTTTCACTAATTTTCTCGGTGCTGGAGTTGCTCCCGGAACCCCAGTACTA
CGCGGCAGAGACCAGGGCGAACATGGTGACGGATGGGGAGGAAGCAATGG
ACGCAGAGGGGGCCGACCGCGATTCGTTAGATGGTGTGTATACTCGAAGA
GTTTCAGCAGTTTGTGGTTTCGCGTGTTCAACGAAGCCATCCTTCCCGCA
GCCTTGGTAAGATGGTGTGTCGATTGGGGTATTTTCACTAATTTTCTCGG
TGCTGGAGTTGCTCCCGGAACCCCAGTACTACGCGGCAGAGACCAGGGCG
AACATGGTGACGGATGGGGAGGAAGCAATGGACGCAGAGGGGGCCGACCG
CGATTCGTTAGAAGTTGGTCAACCATGCACCATCCGCCTTGGGTAGACTT
ACTTGGGCTTTTTATGCCCCCTTCAGGCAGTCGTGGTCTACGCGTACATT
CCTCCAAGCCTCTGCCGGTGAAATTCAATCCCGAAACAAAGCAGGCCAGT
GTTGCAGGCGTTCCAAACAAAGTTCGGTTTGTGCGGAGCCCCTACAACTC
CATGATACCAGTACAGAGGACGTCATGAAGTTGGTCAACCATGCACCATC
CGCCTTGGGTAGACTTACTTGGGCTTTTTATGCCCCCTTCAGGCAGTCGT
GGTCTACGCGTACATTCCTCCAAGCCTCTGCCGGTGAAATTCAATCCCGA
AACAAAGCAGGCCAGTGTTGCAGGCGTTCCAAACAAAGTTCGGTTTGTGC
GGAGCCCCTACAACTCCATGATACCAGTACAGAGGACGTCATGA
back to top