mRNA_F-serratus_M_contig853.19937.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig853.19937.1
Unique NamemRNA_F-serratus_M_contig853.19937.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig853.19937.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig853contigF-serratus_M_contig853:328594..329480 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size673
Cds size399
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig853.19937.1prot_F-serratus_M_contig853.19937.1Fucus serratus malepolypeptideF-serratus_M_contig853 328972..329370 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932509.7130213-UTR-F-serratus_M_contig853:328593..3286891622932509.7130213-UTR-F-serratus_M_contig853:328593..328689Fucus serratus maleUTRF-serratus_M_contig853 328594..328689 +
1690964343.3072119-UTR-F-serratus_M_contig853:328593..3286891690964343.3072119-UTR-F-serratus_M_contig853:328593..328689Fucus serratus maleUTRF-serratus_M_contig853 328594..328689 +
1622932509.724988-UTR-F-serratus_M_contig853:328903..3289711622932509.724988-UTR-F-serratus_M_contig853:328903..328971Fucus serratus maleUTRF-serratus_M_contig853 328904..328971 +
1690964343.3159258-UTR-F-serratus_M_contig853:328903..3289711690964343.3159258-UTR-F-serratus_M_contig853:328903..328971Fucus serratus maleUTRF-serratus_M_contig853 328904..328971 +
1622932509.7649977-UTR-F-serratus_M_contig853:329370..3294801622932509.7649977-UTR-F-serratus_M_contig853:329370..329480Fucus serratus maleUTRF-serratus_M_contig853 329371..329480 +
1690964343.345757-UTR-F-serratus_M_contig853:329370..3294801690964343.345757-UTR-F-serratus_M_contig853:329370..329480Fucus serratus maleUTRF-serratus_M_contig853 329371..329480 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932509.74365-CDS-F-serratus_M_contig853:328971..3293701622932509.74365-CDS-F-serratus_M_contig853:328971..329370Fucus serratus maleCDSF-serratus_M_contig853 328972..329370 +
1690964343.3244522-CDS-F-serratus_M_contig853:328971..3293701690964343.3244522-CDS-F-serratus_M_contig853:328971..329370Fucus serratus maleCDSF-serratus_M_contig853 328972..329370 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig853.19937.1

>prot_F-serratus_M_contig853.19937.1 ID=prot_F-serratus_M_contig853.19937.1|Name=mRNA_F-serratus_M_contig853.19937.1|organism=Fucus serratus male|type=polypeptide|length=133bp
MLPFLLLHGGRPGSGRPSTTLENTKYTAQESYQLVSDPYLQCLPCATQMH
TRRSGSLPAPSSPGSHRSQEFKENLNASKPSDQSKGLGGNIGCRDKNLYI
CLKGFDRGPNSIMRNNEERPWAPRRIRGYHAT*
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mRNA from alignment at F-serratus_M_contig853:328594..329480+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig853.19937.1 ID=mRNA_F-serratus_M_contig853.19937.1|Name=mRNA_F-serratus_M_contig853.19937.1|organism=Fucus serratus male|type=mRNA|length=887bp|location=Sequence derived from alignment at F-serratus_M_contig853:328594..329480+ (Fucus serratus male)
GTGGATACGGGCGTTTTTGCCTCAAAAAATACACTTTTGGTATCAGCAAT
TTGAGGTGCTAGACCGCTCGGGGCCCTATCGCCACATGTTCCAAACGTAA
GAGTGCGTAGTGATGTATCTTTGTTCAGTACGAAGTTTTGGGCTTCGAAG
GTCATGAACCGAGGTTCGGCGGCCGACTTTTTGGTGGTTTTGTGTAAACC
CGGGAATCCCACCACATTTATTTATTTGCCACAGAAAGGTGACTATGATA
CCACACATTCAGATAACTTTCTTCGGCGTACTTTGTCCTCTTCGGAGGGT
GCTCCAGCAGGGGTTGAGGAGGTCTGCTGAGCAAACCGCGGTCTCGGAGG
GGATATCAGGCTCAAGAGCGGTCAATACATGTTGCCGTTCCTACTGCTGC
ATGGCGGGAGACCTGGCTCGGGCCGACCAAGCACAACTCTCGAAAATACA
AAATACACTGCACAAGAGAGCTATCAACTAGTCTCGGACCCTTATCTGCA
GTGTTTACCATGTGCTACGCAAATGCACACGCGGCGATCGGGCAGCCTAC
CTGCACCGAGCTCGCCCGGGAGCCATAGGTCACAGGAGTTTAAAGAAAAT
CTGAACGCATCTAAACCTTCTGATCAGTCAAAAGGTTTAGGTGGGAACAT
TGGCTGTAGGGACAAAAACCTCTACATTTGTTTGAAGGGTTTTGACCGTG
GTCCAAATAGTATAATGAGAAACAACGAAGAACGGCCCTGGGCTCCAAGG
CGAATTCGTGGGTATCATGCCACATGACCTATAAGCCCCCCCATGCCGAT
AGCCCGGAGTCATAGGATCACGTATGTACCTCGCAGAGATGCCATGGCGC
CGCGGTTGCTCCGTTATCCGTGGTGCCCCAAGAGGGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig853:328594..329480+

>mRNA_F-serratus_M_contig853.19937.1 ID=mRNA_F-serratus_M_contig853.19937.1|Name=mRNA_F-serratus_M_contig853.19937.1|organism=Fucus serratus male|type=CDS|length=798bp|location=Sequence derived from alignment at F-serratus_M_contig853:328594..329480+ (Fucus serratus male)
ATGTTGCCGTTCCTACTGCTGCATGGCGGGAGACCTGGCTCGGGCCGACC
AAGCACAACTCTCGAAAATACAAAATACACTGCACAAGAGAGCTATCAAC
TAGTCTCGGACCCTTATCTGCAGTGTTTACCATGTGCTACGCAAATGCAC
ACGCGGCGATCGGGCAGCCTACCTGCACCGAGCTCGCCCGGGAGCCATAG
GTCACAGGAGTTTAAAGAAAATCTGAACGCATCTAAACCTTCTGATCAGT
CAAAAGGTTTAGGTGGGAACATTGGCTGTAGGGACAAAAACCTCTACATT
TGTTTGAAGGGTTTTGACCGTGGTCCAAATAGTATAATGAGAAACAACGA
AGAACGGCCCTGGGCTCCAAGGCGAATTCGTGGGTATCATGCCACATGAA
TGTTGCCGTTCCTACTGCTGCATGGCGGGAGACCTGGCTCGGGCCGACCA
AGCACAACTCTCGAAAATACAAAATACACTGCACAAGAGAGCTATCAACT
AGTCTCGGACCCTTATCTGCAGTGTTTACCATGTGCTACGCAAATGCACA
CGCGGCGATCGGGCAGCCTACCTGCACCGAGCTCGCCCGGGAGCCATAGG
TCACAGGAGTTTAAAGAAAATCTGAACGCATCTAAACCTTCTGATCAGTC
AAAAGGTTTAGGTGGGAACATTGGCTGTAGGGACAAAAACCTCTACATTT
GTTTGAAGGGTTTTGACCGTGGTCCAAATAGTATAATGAGAAACAACGAA
GAACGGCCCTGGGCTCCAAGGCGAATTCGTGGGTATCATGCCACATGA
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