mRNA_F-serratus_M_contig853.19928.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig853.19928.1
Unique NamemRNA_F-serratus_M_contig853.19928.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig853.19928.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig853contigF-serratus_M_contig853:120816..121671 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size477
Cds size474
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932509.5791683-CDS-F-serratus_M_contig853:120816..1211331622932509.5791683-CDS-F-serratus_M_contig853:120816..121133Fucus serratus maleCDSF-serratus_M_contig853 120817..121133 -
1690964343.2704537-CDS-F-serratus_M_contig853:120816..1211331690964343.2704537-CDS-F-serratus_M_contig853:120816..121133Fucus serratus maleCDSF-serratus_M_contig853 120817..121133 -
1622932509.5973372-CDS-F-serratus_M_contig853:121514..1216711622932509.5973372-CDS-F-serratus_M_contig853:121514..121671Fucus serratus maleCDSF-serratus_M_contig853 121515..121671 -
1690964343.2797809-CDS-F-serratus_M_contig853:121514..1216711690964343.2797809-CDS-F-serratus_M_contig853:121514..121671Fucus serratus maleCDSF-serratus_M_contig853 121515..121671 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig853.19928.1prot_F-serratus_M_contig853.19928.1Fucus serratus malepolypeptideF-serratus_M_contig853 120817..121671 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig853.19928.1

>prot_F-serratus_M_contig853.19928.1 ID=prot_F-serratus_M_contig853.19928.1|Name=mRNA_F-serratus_M_contig853.19928.1|organism=Fucus serratus male|type=polypeptide|length=158bp
VQLYTTTFTEAASTTTNYRRMGEEVRPSWLSSLIGQADKLVLWTVGYGDK
PIEHTFSDDESDGESVLNSDDDESDSEAEAQTQKERLGDEDITPRVDEHA
SLAPTSEEGGVIAAVSKDSGDHEQPARNASEVPSEQLDCPRFSEGIGQEK
AEAASLSA
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mRNA from alignment at F-serratus_M_contig853:120816..121671-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig853.19928.1 ID=mRNA_F-serratus_M_contig853.19928.1|Name=mRNA_F-serratus_M_contig853.19928.1|organism=Fucus serratus male|type=mRNA|length=856bp|location=Sequence derived from alignment at F-serratus_M_contig853:120816..121671- (Fucus serratus male)
GTACAGCTGTACACAACAACCTTTACTGAGGCTGCATCCACCACCACAAA
TTATCGTCGAATGGGCGAGGAAGTACGACCATCGTGGCTATCAAGCCTCA
TAGGTCAAGCTGACAAACTCGTTCTCTGGACGGTGGGCTACGGAGACAAG
CCAATCGGTGAGAGAGAACGCAGCGATGAGGATGCACAAAGCACTTTATA
GAAAATTATGAACCTATGATATGCACAAACCTTCCGAGCATTCACAGAAT
ACAATATTTTAATACTGGTATAATATTGTAGTACGATTCCTTGTCGAACG
ATATTGGAACAGAAACTCTTGAGACATCTACGTGTAAATATTCGTGCTTG
TGGGCGCTTTGACCCGGCTTGGGTTTGATATCTCTGTAACTCTAGCCACG
TCTCGCGCTCTTCGCGTCTGGTGTATCGGTGTCATCCCCACCCATAACAG
TCCAGTAGAAATATCTAGTTTAAATTAAGAAGAGATGTATTAGCTCCATG
GGTTACGAAGCATTTCCTGCTGTTCCCGTCCCCAACAGAACACACGTTTT
CGGACGACGAGTCGGACGGCGAGAGCGTTCTTAACTCCGACGACGACGAA
TCAGACTCAGAGGCAGAAGCTCAAACACAGAAGGAACGGCTCGGAGACGA
GGACATCACTCCCCGAGTAGATGAACATGCCAGTTTGGCACCAACAAGTG
AAGAGGGAGGGGTGATTGCGGCGGTCTCCAAGGACTCTGGCGACCACGAA
CAACCGGCACGCAACGCCAGCGAAGTGCCCTCCGAGCAGCTTGATTGTCC
ACGTTTCTCTGAAGGGATAGGTCAGGAGAAAGCGGAAGCAGCCAGCCTGT
CCGCGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig853:120816..121671-

>mRNA_F-serratus_M_contig853.19928.1 ID=mRNA_F-serratus_M_contig853.19928.1|Name=mRNA_F-serratus_M_contig853.19928.1|organism=Fucus serratus male|type=CDS|length=948bp|location=Sequence derived from alignment at F-serratus_M_contig853:120816..121671- (Fucus serratus male)
GTACAGCTGTACACAACAACCTTTACTGAGGCTGCATCCACCACCACAAA
TTATCGTCGAATGGGCGAGGAAGTACGACCATCGTGGCTATCAAGCCTCA
TAGGTCAAGCTGACAAACTCGTTCTCTGGACGGTGGGCTACGGAGACAAG
CCAATCGGTACAGCTGTACACAACAACCTTTACTGAGGCTGCATCCACCA
CCACAAATTATCGTCGAATGGGCGAGGAAGTACGACCATCGTGGCTATCA
AGCCTCATAGGTCAAGCTGACAAACTCGTTCTCTGGACGGTGGGCTACGG
AGACAAGCCAATCGAACACACGTTTTCGGACGACGAGTCGGACGGCGAGA
GCGTTCTTAACTCCGACGACGACGAATCAGACTCAGAGGCAGAAGCTCAA
ACACAGAAGGAACGGCTCGGAGACGAGGACATCACTCCCCGAGTAGATGA
ACATGCCAGTTTGGCACCAACAAGTGAAGAGGGAGGGGTGATTGCGGCGG
TCTCCAAGGACTCTGGCGACCACGAACAACCGGCACGCAACGCCAGCGAA
GTGCCCTCCGAGCAGCTTGATTGTCCACGTTTCTCTGAAGGGATAGGTCA
GGAGAAAGCGGAAGCAGCCAGCCTGTCCGCGAACACACGTTTTCGGACGA
CGAGTCGGACGGCGAGAGCGTTCTTAACTCCGACGACGACGAATCAGACT
CAGAGGCAGAAGCTCAAACACAGAAGGAACGGCTCGGAGACGAGGACATC
ACTCCCCGAGTAGATGAACATGCCAGTTTGGCACCAACAAGTGAAGAGGG
AGGGGTGATTGCGGCGGTCTCCAAGGACTCTGGCGACCACGAACAACCGG
CACGCAACGCCAGCGAAGTGCCCTCCGAGCAGCTTGATTGTCCACGTTTC
TCTGAAGGGATAGGTCAGGAGAAAGCGGAAGCAGCCAGCCTGTCCGCG
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