mRNA_F-serratus_M_contig85.19900.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig85.19900.1
Unique NamemRNA_F-serratus_M_contig85.19900.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig85.19900.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig85contigF-serratus_M_contig85:716379..717951 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size613
Cds size594
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig85.19900.1prot_F-serratus_M_contig85.19900.1Fucus serratus malepolypeptideF-serratus_M_contig85 716396..717951 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932501.1442-UTR-F-serratus_M_contig85:716378..7163951622932501.1442-UTR-F-serratus_M_contig85:716378..716395Fucus serratus maleUTRF-serratus_M_contig85 716379..716395 +
1690964339.0914273-UTR-F-serratus_M_contig85:716378..7163951690964339.0914273-UTR-F-serratus_M_contig85:716378..716395Fucus serratus maleUTRF-serratus_M_contig85 716379..716395 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932501.1606476-CDS-F-serratus_M_contig85:716395..7165391622932501.1606476-CDS-F-serratus_M_contig85:716395..716539Fucus serratus maleCDSF-serratus_M_contig85 716396..716539 +
1690964339.1011662-CDS-F-serratus_M_contig85:716395..7165391690964339.1011662-CDS-F-serratus_M_contig85:716395..716539Fucus serratus maleCDSF-serratus_M_contig85 716396..716539 +
1622932501.1889875-CDS-F-serratus_M_contig85:716757..7168601622932501.1889875-CDS-F-serratus_M_contig85:716757..716860Fucus serratus maleCDSF-serratus_M_contig85 716758..716860 +
1690964339.1111186-CDS-F-serratus_M_contig85:716757..7168601690964339.1111186-CDS-F-serratus_M_contig85:716757..716860Fucus serratus maleCDSF-serratus_M_contig85 716758..716860 +
1622932501.2010791-CDS-F-serratus_M_contig85:717177..7173411622932501.2010791-CDS-F-serratus_M_contig85:717177..717341Fucus serratus maleCDSF-serratus_M_contig85 717178..717341 +
1690964339.1220284-CDS-F-serratus_M_contig85:717177..7173411690964339.1220284-CDS-F-serratus_M_contig85:717177..717341Fucus serratus maleCDSF-serratus_M_contig85 717178..717341 +
1622932501.2190387-CDS-F-serratus_M_contig85:717768..7179511622932501.2190387-CDS-F-serratus_M_contig85:717768..717951Fucus serratus maleCDSF-serratus_M_contig85 717769..717951 +
1690964339.1377068-CDS-F-serratus_M_contig85:717768..7179511690964339.1377068-CDS-F-serratus_M_contig85:717768..717951Fucus serratus maleCDSF-serratus_M_contig85 717769..717951 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig85.19900.1

>prot_F-serratus_M_contig85.19900.1 ID=prot_F-serratus_M_contig85.19900.1|Name=mRNA_F-serratus_M_contig85.19900.1|organism=Fucus serratus male|type=polypeptide|length=198bp
MRRVIDAFETLIRNRPQALEATLGGAMCIHPVSQDEDDRNGDTLLLTKEM
EAHIEQLSSVRAVISHGGSRLEHGLPYSPRTSGKVTRKIRSLSQGLHRRL
GDRLQSALPGEIAEAVRRTCIDENNAVHSRTQYRPVVVATQRKPVLRQDT
YEWNDGVPLSPEEVFLMLGTIMKEQGVEACRITAAANASTSTATDTDV
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mRNA from alignment at F-serratus_M_contig85:716379..717951+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig85.19900.1 ID=mRNA_F-serratus_M_contig85.19900.1|Name=mRNA_F-serratus_M_contig85.19900.1|organism=Fucus serratus male|type=mRNA|length=1573bp|location=Sequence derived from alignment at F-serratus_M_contig85:716379..717951+ (Fucus serratus male)
ATTGTGTCGCTGCGTTCATGAGGCGGGTAATCGACGCGTTCGAGACTCTT
ATCAGAAATAGGCCTCAGGCTCTAGAGGCGACGCTGGGTGGGGCGATGTG
CATCCATCCAGTATCCCAGGACGAAGATGATAGAAATGGAGACACTCTAT
TGCTCACGAAGGTATGAAGGCTCTGCCCATTGCCCCTACATGGAGTTCGG
GGCTTTTAAGGGTCACGACGAGTTTGATTTAAAGGAACGTTCGCCGAGCC
GGGCAAATAACGGGTTTGATGTATACCTATACTGTTCGAACATCGTGCCT
TTATACGTGAGGATCAGCTCAAATGCGTGCTCTCTCAACCCCCCGTTCCC
GATGCCGCTGTCGGTTGACACTGGGGCAGGAAATGGAAGCCCACATCGAA
CAGCTTAGCAGTGTTCGCGCTGTGATAAGCCACGGCGGGAGTCGGTTGGA
ACACGGTTTGCCGTACTCTCCCCGAACGAGCGGTAAGCCTGTGAAACGAG
GCGCTTATACAGGTATTTATTTACACACTCTTTCGTTTTTAATTGGGATT
TAGTGTTAAGGCGGTCGGGCGAACATCCTGGTGCCTCATGATTCATTGTG
ATTCATTGCCACCCTCGTCAGCCATTTATGTGTGCAGTATACTATATACC
GTCTATACAGACAAGGTGTAGATAAAAATTGGCATTACCAGTGCTCTTGA
CTATTAATAGTACAAGTATCATAAGTCGAATGTTTTGCGCCATAAATAAT
CTGCGAGCCTGGGACTACCCCTCGTTTTTTCCAACATGACTTAAAGTAGG
TAAGGTCACGCGTAAGATCCGGTCGCTGTCTCAAGGCCTCCATCGCCGCT
TGGGGGACCGCTTACAGTCAGCTTTGCCCGGGGAAATCGCAGAAGCTGTA
CGTCGTACGTGCATCGACGAGAACAATGCCGTCCACAGCAGAACGCAGTA
CCGCCCAGTCGTGGTATGTACTGTAATTCCTACTATACCCATTCAAAATG
AAAACGGTAATAACGGGACCCTTCTGCGAAAGTTGTTTCTGGACAACACC
AGATGCAAAAAGGAGGAGGATATTATGTACTGTATTACTGTATTACTGTA
TGACTGTATGTATGGAAAGGTACTGGTATAATATAGCACATCAAAATCAA
TTCTCCAGTGAGCGTCCTCAAGTGTATTATAAAGAGCGTCTCATACACGG
TCGCTAGCAGGAGTTGTAGTACAGGACGAACATCTGATGACTTTTCTCAT
GACTCAAGAAGCCGCAACTGTGTTAAGTAGTTTTGAGCAGTATAAAACCT
TTGAAAGTAACGTTCCCAGTAGAGCAGAATGAACCGGTAGACTGACTATG
CGGCACATCGACGCGATGCTCATGATCGGGTGGTATTCAGGTGGCTACCC
AAAGGAAGCCGGTTTTGAGGCAAGATACCTACGAATGGAATGATGGCGTG
CCTCTGTCACCAGAAGAGGTCTTCCTTATGTTGGGCACGATCATGAAGGA
ACAGGGTGTTGAGGCGTGTAGGATCACTGCAGCAGCTAACGCTTCGACAT
CCACTGCAACCGATACAGACGTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig85:716379..717951+

>mRNA_F-serratus_M_contig85.19900.1 ID=mRNA_F-serratus_M_contig85.19900.1|Name=mRNA_F-serratus_M_contig85.19900.1|organism=Fucus serratus male|type=CDS|length=1188bp|location=Sequence derived from alignment at F-serratus_M_contig85:716379..717951+ (Fucus serratus male)
ATGAGGCGGGTAATCGACGCGTTCGAGACTCTTATCAGAAATAGGCCTCA
GGCTCTAGAGGCGACGCTGGGTGGGGCGATGTGCATCCATCCAGTATCCC
AGGACGAAGATGATAGAAATGGAGACACTCTATTGCTCACGAAGATGAGG
CGGGTAATCGACGCGTTCGAGACTCTTATCAGAAATAGGCCTCAGGCTCT
AGAGGCGACGCTGGGTGGGGCGATGTGCATCCATCCAGTATCCCAGGACG
AAGATGATAGAAATGGAGACACTCTATTGCTCACGAAGGAAATGGAAGCC
CACATCGAACAGCTTAGCAGTGTTCGCGCTGTGATAAGCCACGGCGGGAG
TCGGTTGGAACACGGTTTGCCGTACTCTCCCCGAACGAGCGGAAATGGAA
GCCCACATCGAACAGCTTAGCAGTGTTCGCGCTGTGATAAGCCACGGCGG
GAGTCGGTTGGAACACGGTTTGCCGTACTCTCCCCGAACGAGCGGTAAGG
TCACGCGTAAGATCCGGTCGCTGTCTCAAGGCCTCCATCGCCGCTTGGGG
GACCGCTTACAGTCAGCTTTGCCCGGGGAAATCGCAGAAGCTGTACGTCG
TACGTGCATCGACGAGAACAATGCCGTCCACAGCAGAACGCAGTACCGCC
CAGTCGTGGTAAGGTCACGCGTAAGATCCGGTCGCTGTCTCAAGGCCTCC
ATCGCCGCTTGGGGGACCGCTTACAGTCAGCTTTGCCCGGGGAAATCGCA
GAAGCTGTACGTCGTACGTGCATCGACGAGAACAATGCCGTCCACAGCAG
AACGCAGTACCGCCCAGTCGTGGTGGCTACCCAAAGGAAGCCGGTTTTGA
GGCAAGATACCTACGAATGGAATGATGGCGTGCCTCTGTCACCAGAAGAG
GTCTTCCTTATGTTGGGCACGATCATGAAGGAACAGGGTGTTGAGGCGTG
TAGGATCACTGCAGCAGCTAACGCTTCGACATCCACTGCAACCGATACAG
ACGTGGTGGCTACCCAAAGGAAGCCGGTTTTGAGGCAAGATACCTACGAA
TGGAATGATGGCGTGCCTCTGTCACCAGAAGAGGTCTTCCTTATGTTGGG
CACGATCATGAAGGAACAGGGTGTTGAGGCGTGTAGGATCACTGCAGCAG
CTAACGCTTCGACATCCACTGCAACCGATACAGACGTG
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