mRNA_F-serratus_M_contig85.19897.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig85.19897.1
Unique NamemRNA_F-serratus_M_contig85.19897.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig85.19897.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig85contigF-serratus_M_contig85:624157..625498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size459
Cds size381
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig85.19897.1prot_F-serratus_M_contig85.19897.1Fucus serratus malepolypeptideF-serratus_M_contig85 624234..625498 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932500.933009-UTR-F-serratus_M_contig85:624156..6242331622932500.933009-UTR-F-serratus_M_contig85:624156..624233Fucus serratus maleUTRF-serratus_M_contig85 624157..624233 +
1690964338.9985871-UTR-F-serratus_M_contig85:624156..6242331690964338.9985871-UTR-F-serratus_M_contig85:624156..624233Fucus serratus maleUTRF-serratus_M_contig85 624157..624233 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932500.9535398-CDS-F-serratus_M_contig85:624233..6245621622932500.9535398-CDS-F-serratus_M_contig85:624233..624562Fucus serratus maleCDSF-serratus_M_contig85 624234..624562 +
1690964339.0075586-CDS-F-serratus_M_contig85:624233..6245621690964339.0075586-CDS-F-serratus_M_contig85:624233..624562Fucus serratus maleCDSF-serratus_M_contig85 624234..624562 +
1622932500.9930668-CDS-F-serratus_M_contig85:625446..6254981622932500.9930668-CDS-F-serratus_M_contig85:625446..625498Fucus serratus maleCDSF-serratus_M_contig85 625447..625498 +
1690964339.024707-CDS-F-serratus_M_contig85:625446..6254981690964339.024707-CDS-F-serratus_M_contig85:625446..625498Fucus serratus maleCDSF-serratus_M_contig85 625447..625498 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig85.19897.1

>prot_F-serratus_M_contig85.19897.1 ID=prot_F-serratus_M_contig85.19897.1|Name=mRNA_F-serratus_M_contig85.19897.1|organism=Fucus serratus male|type=polypeptide|length=127bp
MRLMMLNLHSYDARYGILLLMMGSLLFDSSSPESVKPGLVSFSETNNDDS
RGPTINRTCEALCRELAVPMDPTSACKVFARALPHPKMGRICTSKFREGY
ELACPLMCSRITRTAGGIGDIRPWIES
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mRNA from alignment at F-serratus_M_contig85:624157..625498+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig85.19897.1 ID=mRNA_F-serratus_M_contig85.19897.1|Name=mRNA_F-serratus_M_contig85.19897.1|organism=Fucus serratus male|type=mRNA|length=1342bp|location=Sequence derived from alignment at F-serratus_M_contig85:624157..625498+ (Fucus serratus male)
CTGGTATTTATAGATCTTTTTCCAGGGCAAATCCTCCGTAGAAAGAGGAA
GACAGCGCTAGCGAGGACAGGAGGGCAATGCGACTGATGATGCTCAACCT
GCATTCTTACGATGCCCGATATGGTATTTTGCTTCTGATGATGGGATCGC
TCTTATTTGATAGCTCTTCTCCAGAAAGTGTCAAACCAGGGTTGGTATCC
TTTTCTGAAACTAATAATGATGATTCACGAGGACCTACTATTAATAGGAC
ATGCGAGGCTTTGTGCCGGGAGCTCGCAGTTCCCATGGATCCCACGTCGG
CTTGCAAGGTATTCGCACGTGCTTTACCCCATCCGAAAATGGGGAGGATA
TGCACCAGCAAATTCCGTGAAGGATATGAACTCGCTTGTCCACTAATGTG
TTCTCGGTGAGGCCCCGCGTTAGTCCCGCGACCCCACCCCGCTACTTGTA
CTTTGTACTTTCTACCAGTACCGACCGACAGTAGGACAGTACCGTAGTGG
TGATTATATCTTACACCAACTTCCGAACTCGGGGAATTTGAGTGTGCAAG
GCAGGTACTACCTGGAGATCAAAATGGAATAACCTCAGTATTTTGATCAA
GGGCCACTCTATACAACAGGCTAGTTAAATTGATGCAGAAATTTTTGACG
ATCTCGACAGAGCCCCTCGTTAATACCTTTTACAGTGCAGTACAGTAACT
GCGAGTATGACAGTTGACAGCTTCCAGAGTAAAATAGTTGAATATATACT
ATAACAATAATACTGTCCGTACAATTATCGTATTTGATGGAACAAATAGC
GTTACTCGAAAGACCTACGATACAAGCTCCCAAACTGTAATAAAGGGTTT
AAAGAAAAATATGAATACCTCTAGATCTTCTGAGCATCCCCCAGCATCCC
CCAGTCGTTGCGCCGCGCGCGAGGTGGGAGCGATCTCTCCTTACAGTACT
CTGTGCAAGTCCGTCTCATGTTGCCCGGTGTGCCCACCAGATTTTACGTG
TACTGTATTCGCGTTGCATTTCGTCGCGCTCATCCTTGTAATAATATTAG
TATTTGATACAAGTATGTTGTGTGCGCAGTTGTCAGGCACATCTTGGAGA
GTGCTATGATACAGAAGAGTTACAGTTGAGTTATATTCCAGGGCGCGAGT
CCGTTTAGTTTGTTGCCGAACTCAGCAGCCAAAGCAGGTCAAATATTGGT
AGAGTTGAACCCGCGGTATGGCTGCGTACGAAAATGTTAAACCAGGAAAC
TAAGGGTATCAAAATGCTCCTCAACCAACGTTTCGCCAAGCATTACTCGT
ACCGCAGGTGGCATCGGAGATATCCGACCGTGGATTGAAAGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig85:624157..625498+

>mRNA_F-serratus_M_contig85.19897.1 ID=mRNA_F-serratus_M_contig85.19897.1|Name=mRNA_F-serratus_M_contig85.19897.1|organism=Fucus serratus male|type=CDS|length=762bp|location=Sequence derived from alignment at F-serratus_M_contig85:624157..625498+ (Fucus serratus male)
ATGCGACTGATGATGCTCAACCTGCATTCTTACGATGCCCGATATGGTAT
TTTGCTTCTGATGATGGGATCGCTCTTATTTGATAGCTCTTCTCCAGAAA
GTGTCAAACCAGGGTTGGTATCCTTTTCTGAAACTAATAATGATGATTCA
CGAGGACCTACTATTAATAGGACATGCGAGGCTTTGTGCCGGGAGCTCGC
AGTTCCCATGGATCCCACGTCGGCTTGCAAGGTATTCGCACGTGCTTTAC
CCCATCCGAAAATGGGGAGGATATGCACCAGCAAATTCCGTGAAGGATAT
GAACTCGCTTGTCCACTAATGTGTTCTCGATGCGACTGATGATGCTCAAC
CTGCATTCTTACGATGCCCGATATGGTATTTTGCTTCTGATGATGGGATC
GCTCTTATTTGATAGCTCTTCTCCAGAAAGTGTCAAACCAGGGTTGGTAT
CCTTTTCTGAAACTAATAATGATGATTCACGAGGACCTACTATTAATAGG
ACATGCGAGGCTTTGTGCCGGGAGCTCGCAGTTCCCATGGATCCCACGTC
GGCTTGCAAGGTATTCGCACGTGCTTTACCCCATCCGAAAATGGGGAGGA
TATGCACCAGCAAATTCCGTGAAGGATATGAACTCGCTTGTCCACTAATG
TGTTCTCGCATTACTCGTACCGCAGGTGGCATCGGAGATATCCGACCGTG
GATTGAAAGCCATTACTCGTACCGCAGGTGGCATCGGAGATATCCGACCG
TGGATTGAAAGC
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