mRNA_F-serratus_M_contig1265.1988.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1265.1988.1
Unique NamemRNA_F-serratus_M_contig1265.1988.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1265.1988.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1265contigF-serratus_M_contig1265:140709..141883 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size833
Cds size453
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1265.1988.1prot_F-serratus_M_contig1265.1988.1Fucus serratus malepolypeptideF-serratus_M_contig1265 140886..141338 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929198.383963-UTR-F-serratus_M_contig1265:140708..1407771622929198.383963-UTR-F-serratus_M_contig1265:140708..140777Fucus serratus maleUTRF-serratus_M_contig1265 140709..140777 +
1690962746.537548-UTR-F-serratus_M_contig1265:140708..1407771690962746.537548-UTR-F-serratus_M_contig1265:140708..140777Fucus serratus maleUTRF-serratus_M_contig1265 140709..140777 +
1622929198.3970213-UTR-F-serratus_M_contig1265:140858..1408851622929198.3970213-UTR-F-serratus_M_contig1265:140858..140885Fucus serratus maleUTRF-serratus_M_contig1265 140859..140885 +
1690962746.5482585-UTR-F-serratus_M_contig1265:140858..1408851690962746.5482585-UTR-F-serratus_M_contig1265:140858..140885Fucus serratus maleUTRF-serratus_M_contig1265 140859..140885 +
1622929198.4195669-UTR-F-serratus_M_contig1265:141338..1413421622929198.4195669-UTR-F-serratus_M_contig1265:141338..141342Fucus serratus maleUTRF-serratus_M_contig1265 141339..141342 +
1690962746.5692244-UTR-F-serratus_M_contig1265:141338..1413421690962746.5692244-UTR-F-serratus_M_contig1265:141338..141342Fucus serratus maleUTRF-serratus_M_contig1265 141339..141342 +
1622929198.4319587-UTR-F-serratus_M_contig1265:141603..1418831622929198.4319587-UTR-F-serratus_M_contig1265:141603..141883Fucus serratus maleUTRF-serratus_M_contig1265 141604..141883 +
1690962746.579182-UTR-F-serratus_M_contig1265:141603..1418831690962746.579182-UTR-F-serratus_M_contig1265:141603..141883Fucus serratus maleUTRF-serratus_M_contig1265 141604..141883 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929198.407984-CDS-F-serratus_M_contig1265:140885..1413381622929198.407984-CDS-F-serratus_M_contig1265:140885..141338Fucus serratus maleCDSF-serratus_M_contig1265 140886..141338 +
1690962746.5588639-CDS-F-serratus_M_contig1265:140885..1413381690962746.5588639-CDS-F-serratus_M_contig1265:140885..141338Fucus serratus maleCDSF-serratus_M_contig1265 140886..141338 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1265.1988.1

>prot_F-serratus_M_contig1265.1988.1 ID=prot_F-serratus_M_contig1265.1988.1|Name=mRNA_F-serratus_M_contig1265.1988.1|organism=Fucus serratus male|type=polypeptide|length=151bp
MVNVISREQFRTECCSKQPSFGVAGTKTAVYCPQHSSFDVDGTRKVEYCA
QHTKMKHDAEGYKRREIGNASPISAKQETVHPFPAHASPLSGGSRASRKR
QRHRDITSTASKRAVSRESAEEAVTAPEIEEQTFPVRGDSSVKTEVQVSL
*
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mRNA from alignment at F-serratus_M_contig1265:140709..141883+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1265.1988.1 ID=mRNA_F-serratus_M_contig1265.1988.1|Name=mRNA_F-serratus_M_contig1265.1988.1|organism=Fucus serratus male|type=mRNA|length=1175bp|location=Sequence derived from alignment at F-serratus_M_contig1265:140709..141883+ (Fucus serratus male)
CAAAAAGTGCAGCACCGAAGGCTGCGGCAAGAGGGCATCGTTCGGAGTGG
CAGGTTCGAAAACCGCGGAGTACTGTGCACAGCACGCACCGGACGGGATG
ACCGCGGCAAGAGGCGATCGTTTGGAGTGGCAGGCACGAAAACCGCGGAG
TACTGTGCAAAGCACGCACCGGATGGGATGGTCAACGTCATAAGCAGAGA
GCAGTTCAGAACCGAATGTTGCAGCAAGCAGCCGTCGTTCGGAGTGGCAG
GTACGAAAACGGCGGTGTACTGTCCGCAGCACTCGTCATTTGATGTTGAT
GGGACAAGGAAAGTGGAGTACTGTGCACAGCACACCAAGATGAAACACGA
TGCCGAAGGATACAAGAGGAGAGAGATTGGTAATGCAAGTCCGATTAGCG
CAAAACAAGAAACCGTTCATCCTTTTCCCGCCCATGCAAGCCCTCTGTCG
GGCGGTAGCCGGGCCTCTCGTAAGCGTCAACGACACCGAGACATCACGTC
TACAGCTTCGAAGCGAGCTGTCTCACGAGAGTCGGCTGAAGAAGCAGTCA
CTGCGCCGGAAATCGAGGAGCAAACATTTCCCGTGAGGGGAGATTCTTCT
GTGAAGACGGAGGTGCAGGTCTCCTTGTAGTCAGGTACACTGGACGTGAC
CGCAAGCCTATATTTTTAAATATCAGTTTGAATGTTATTTCTACGTTTCC
GGAAACCGGAGTGTTGGAtgAGACATGTCTACTGTCTTGCGTTTTGACTT
TTGTCAAGGCTGTGAGTTCATCTCAAGGGCCCATTTTATCTTAGACCCTC
AAGACCATGCAGCTGTAGCCATTCCTCAACGAAACCCGTCACTCGTGCTT
ACCCCCACGACATTGTGCTATCGTTCTTCCGTCTGTTGAACTTAGGTGCT
GTGATCAAGAGCGGGGTTATTGTATGATACTATAGCTGCCGAGATGCCGG
TGTTTCTGGTGAGGGTCCTATCCCTGCGTACCTCTGGAACAAGGTCATCC
ATTATTTTATAATATACTTAGAACGAGTGTTCAATCCTTATTCTGTACGG
GTAGGTATGAATGAACCGGAGGACGGTGCAATGGAGGAGTTTCCACGTGT
ATCATTAAAAAGTCTCCCGGAATCCCGATTTATAATTTAAGGGGTTGAGT
TTCTGTGTTTGGTATGGTGATCGTC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1265:140709..141883+

>mRNA_F-serratus_M_contig1265.1988.1 ID=mRNA_F-serratus_M_contig1265.1988.1|Name=mRNA_F-serratus_M_contig1265.1988.1|organism=Fucus serratus male|type=CDS|length=906bp|location=Sequence derived from alignment at F-serratus_M_contig1265:140709..141883+ (Fucus serratus male)
ATGGTCAACGTCATAAGCAGAGAGCAGTTCAGAACCGAATGTTGCAGCAA
GCAGCCGTCGTTCGGAGTGGCAGGTACGAAAACGGCGGTGTACTGTCCGC
AGCACTCGTCATTTGATGTTGATGGGACAAGGAAAGTGGAGTACTGTGCA
CAGCACACCAAGATGAAACACGATGCCGAAGGATACAAGAGGAGAGAGAT
TGGTAATGCAAGTCCGATTAGCGCAAAACAAGAAACCGTTCATCCTTTTC
CCGCCCATGCAAGCCCTCTGTCGGGCGGTAGCCGGGCCTCTCGTAAGCGT
CAACGACACCGAGACATCACGTCTACAGCTTCGAAGCGAGCTGTCTCACG
AGAGTCGGCTGAAGAAGCAGTCACTGCGCCGGAAATCGAGGAGCAAACAT
TTCCCGTGAGGGGAGATTCTTCTGTGAAGACGGAGGTGCAGGTCTCCTTG
TAGATGGTCAACGTCATAAGCAGAGAGCAGTTCAGAACCGAATGTTGCAG
CAAGCAGCCGTCGTTCGGAGTGGCAGGTACGAAAACGGCGGTGTACTGTC
CGCAGCACTCGTCATTTGATGTTGATGGGACAAGGAAAGTGGAGTACTGT
GCACAGCACACCAAGATGAAACACGATGCCGAAGGATACAAGAGGAGAGA
GATTGGTAATGCAAGTCCGATTAGCGCAAAACAAGAAACCGTTCATCCTT
TTCCCGCCCATGCAAGCCCTCTGTCGGGCGGTAGCCGGGCCTCTCGTAAG
CGTCAACGACACCGAGACATCACGTCTACAGCTTCGAAGCGAGCTGTCTC
ACGAGAGTCGGCTGAAGAAGCAGTCACTGCGCCGGAAATCGAGGAGCAAA
CATTTCCCGTGAGGGGAGATTCTTCTGTGAAGACGGAGGTGCAGGTCTCC
TTGTAG
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