mRNA_F-serratus_M_contig849.19882.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig849.19882.1
Unique NamemRNA_F-serratus_M_contig849.19882.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig849.19882.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig849contigF-serratus_M_contig849:327088..327720 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size633
Cds size402
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig849.19882.1prot_F-serratus_M_contig849.19882.1Fucus serratus malepolypeptideF-serratus_M_contig849 327099..327500 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932499.1829152-UTR-F-serratus_M_contig849:327087..3270981622932499.1829152-UTR-F-serratus_M_contig849:327087..327098Fucus serratus maleUTRF-serratus_M_contig849 327088..327098 +
1690964338.0971653-UTR-F-serratus_M_contig849:327087..3270981690964338.0971653-UTR-F-serratus_M_contig849:327087..327098Fucus serratus maleUTRF-serratus_M_contig849 327088..327098 +
1622932499.2121785-UTR-F-serratus_M_contig849:327500..3277201622932499.2121785-UTR-F-serratus_M_contig849:327500..327720Fucus serratus maleUTRF-serratus_M_contig849 327501..327720 +
1690964338.1215813-UTR-F-serratus_M_contig849:327500..3277201690964338.1215813-UTR-F-serratus_M_contig849:327500..327720Fucus serratus maleUTRF-serratus_M_contig849 327501..327720 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932499.1990726-CDS-F-serratus_M_contig849:327098..3275001622932499.1990726-CDS-F-serratus_M_contig849:327098..327500Fucus serratus maleCDSF-serratus_M_contig849 327099..327500 +
1690964338.105811-CDS-F-serratus_M_contig849:327098..3275001690964338.105811-CDS-F-serratus_M_contig849:327098..327500Fucus serratus maleCDSF-serratus_M_contig849 327099..327500 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig849.19882.1

>prot_F-serratus_M_contig849.19882.1 ID=prot_F-serratus_M_contig849.19882.1|Name=mRNA_F-serratus_M_contig849.19882.1|organism=Fucus serratus male|type=polypeptide|length=134bp
MPLVSARWVKDTLAPAPGAVSGMPAILSALGDGRMVLLAAASKGGSVTRT
ADSVDKDALPSTVAVGSDRFLSHIELNRLLHPRADLRRDRRPQGASAVKA
CAPRNPSKGSLSSPYVQRAFRQESSSNGGKSSE*
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mRNA from alignment at F-serratus_M_contig849:327088..327720+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig849.19882.1 ID=mRNA_F-serratus_M_contig849.19882.1|Name=mRNA_F-serratus_M_contig849.19882.1|organism=Fucus serratus male|type=mRNA|length=633bp|location=Sequence derived from alignment at F-serratus_M_contig849:327088..327720+ (Fucus serratus male)
ACCTGTTCCTGATGCCGCTTGTTTCTGCGCGTTGGGTCAAAGACACACTG
GCGCCAGCCCCGGGCGCAGTTTCGGGGATGCCAGCAATACTCTCAGCTCT
CGGTGATGGGCGAATGGTCCTGCTGGCGGCTGCGTCCAAAGGCGGATCTG
TTACCCGCACGGCAGATTCTGTTGACAAGGATGCTCTCCCATCGACCGTT
GCTGTCGGGTCTGATCGGTTTTTATCGCACATCGAACTAAACCGCCTATT
ACACCCCCGTGCTGATTTGCGAAGGGATCGCCGGCCCCAGGGCGCGTCGG
CAGTGAAAGCATGCGCTCCGCGCAATCCATCAAAGGGTTCATTGTCATCA
CCGTACGTGCAACGAGCCTTCCGGCAGGAATCCTCGTCGAACGGTGGGAA
ATCCTCAGAGTGAAAACGCCGCCGAGGGTCGACAGCGATCGCTTTGACTC
CCTTGTTGGACGCCGCTGACCCCGTATTTACATATGATGGCATCACGGAA
CCCGACTGCGACTCCCCATCGGAGGATGCAGGTTGTCGCAATACGCTCCC
CACGTTTCTCTGTACCCTCCCCCCTTCCTCATCCCCTTTTTCCTCGAGCA
AAGAAGAAATTACGGAGCGCATTTCAGCCTGCA
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Coding sequence (CDS) from alignment at F-serratus_M_contig849:327088..327720+

>mRNA_F-serratus_M_contig849.19882.1 ID=mRNA_F-serratus_M_contig849.19882.1|Name=mRNA_F-serratus_M_contig849.19882.1|organism=Fucus serratus male|type=CDS|length=804bp|location=Sequence derived from alignment at F-serratus_M_contig849:327088..327720+ (Fucus serratus male)
ATGCCGCTTGTTTCTGCGCGTTGGGTCAAAGACACACTGGCGCCAGCCCC
GGGCGCAGTTTCGGGGATGCCAGCAATACTCTCAGCTCTCGGTGATGGGC
GAATGGTCCTGCTGGCGGCTGCGTCCAAAGGCGGATCTGTTACCCGCACG
GCAGATTCTGTTGACAAGGATGCTCTCCCATCGACCGTTGCTGTCGGGTC
TGATCGGTTTTTATCGCACATCGAACTAAACCGCCTATTACACCCCCGTG
CTGATTTGCGAAGGGATCGCCGGCCCCAGGGCGCGTCGGCAGTGAAAGCA
TGCGCTCCGCGCAATCCATCAAAGGGTTCATTGTCATCACCGTACGTGCA
ACGAGCCTTCCGGCAGGAATCCTCGTCGAACGGTGGGAAATCCTCAGAGT
GAATGCCGCTTGTTTCTGCGCGTTGGGTCAAAGACACACTGGCGCCAGCC
CCGGGCGCAGTTTCGGGGATGCCAGCAATACTCTCAGCTCTCGGTGATGG
GCGAATGGTCCTGCTGGCGGCTGCGTCCAAAGGCGGATCTGTTACCCGCA
CGGCAGATTCTGTTGACAAGGATGCTCTCCCATCGACCGTTGCTGTCGGG
TCTGATCGGTTTTTATCGCACATCGAACTAAACCGCCTATTACACCCCCG
TGCTGATTTGCGAAGGGATCGCCGGCCCCAGGGCGCGTCGGCAGTGAAAG
CATGCGCTCCGCGCAATCCATCAAAGGGTTCATTGTCATCACCGTACGTG
CAACGAGCCTTCCGGCAGGAATCCTCGTCGAACGGTGGGAAATCCTCAGA
GTGA
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