mRNA_F-serratus_M_contig1264.1987.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1264.1987.1
Unique NamemRNA_F-serratus_M_contig1264.1987.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1264.1987.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 8.100e-18
Identity = 47/100 (47.00%), Postives = 64/100 (64.00%), Query Frame = 1 
Query:    1 PSPRHWKALLQVASYVNATKEIGLRFVRGSGLRLSVYADADYAAASNDRRSESGVAVVLGSTAISWKSNTQKCVTTVTCDA--------AKEAIFERSSL 276
            P+ R WKAL+Q+ SY+NAT ++G+ +VRGSGL L VY DA YA     RRS +G+AV +G T +S  S TQ+ V+  T +A         KEA+F R+ L
Sbjct: 1058 PTMRDWKALVQILSYLNATMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIAAGEGVKEALFVRAVL 1157
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BLAST of mRNA_F-serratus_M_contig1264.1987.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 8.180e-18
Identity = 47/100 (47.00%), Postives = 64/100 (64.00%), Query Frame = 1 
Query:    1 PSPRHWKALLQVASYVNATKEIGLRFVRGSGLRLSVYADADYAAASNDRRSESGVAVVLGSTAISWKSNTQKCVTTVTCDA--------AKEAIFERSSL 276
            P+ R WKAL+Q+ SY+NAT ++G+ +VRGSGL L VY DA YA     RRS +G+AV +G T +S  S TQ+ V+  T +A         KEA+F R+ L
Sbjct: 1611 PTMRDWKALVQILSYLNATMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIAAGEGVKEALFVRAVL 1710
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BLAST of mRNA_F-serratus_M_contig1264.1987.1 vs. uniprot
Match: A0A6H5K588_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K588_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 2.320e-15
Identity = 41/100 (41.00%), Postives = 61/100 (61.00%), Query Frame = 1 
Query:    1 PSPRHWKALLQVASYVNATKEIGLRFVRGSGLRLSVYADADYAAASNDRRSESGVAVVLGSTAISWKSNTQKCVTTVTCDA--------AKEAIFERSSL 276
            P+ R W AL+++ SY+N TK++G+ +VRGSGL L V+ D+ YA ++ DRRS +G+AV +G T +   + TQ      T +A         KEA+F R  L
Sbjct:   66 PTERMWNALVRIMSYLNETKDLGITYVRGSGLDLDVFVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQPTTEAEYIAAGEGVKEALFVRGVL 165
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BLAST of mRNA_F-serratus_M_contig1264.1987.1 vs. uniprot
Match: A0A6H5KR64_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR64_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 3.500e-15
Identity = 41/100 (41.00%), Postives = 61/100 (61.00%), Query Frame = 1 
Query:    1 PSPRHWKALLQVASYVNATKEIGLRFVRGSGLRLSVYADADYAAASNDRRSESGVAVVLGSTAISWKSNTQKCVTTVTCDA--------AKEAIFERSSL 276
            P+ R W AL+++ SY+N TK++G+ +VRGSGL L V+ D+ YA ++ DRRS +G+AV +G T +   + TQ      T +A         KEA+F R  L
Sbjct:   24 PTERMWNALVRIMSYLNETKDLGIAYVRGSGLDLDVFVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTTEAEYIAAGEGVKEALFVRGVL 123
[Close]
BLAST of mRNA_F-serratus_M_contig1264.1987.1 vs. uniprot
Match: A0A6H5JRV3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRV3_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 4.780e-15
Identity = 41/100 (41.00%), Postives = 61/100 (61.00%), Query Frame = 1 
Query:    1 PSPRHWKALLQVASYVNATKEIGLRFVRGSGLRLSVYADADYAAASNDRRSESGVAVVLGSTAISWKSNTQKCVTTVTCDA--------AKEAIFERSSL 276
            P+ R W AL+++ SY+N TK++G+ +VRGSGL L V+ D+ YA ++ DRRS +G+AV +G T +   + TQ      T +A         KEA+F R  L
Sbjct:   92 PTERKWNALVRILSYLNETKDLGITYVRGSGLDLDVFVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTTEAEYIAAGEGVKEALFVRGVL 191
[Close]
BLAST of mRNA_F-serratus_M_contig1264.1987.1 vs. uniprot
Match: A0A6H5K887_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K887_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 5.620e-15
Identity = 41/100 (41.00%), Postives = 61/100 (61.00%), Query Frame = 1 
Query:    1 PSPRHWKALLQVASYVNATKEIGLRFVRGSGLRLSVYADADYAAASNDRRSESGVAVVLGSTAISWKSNTQKCVTTVTCDA--------AKEAIFERSSL 276
            P+ R W AL+++ SY+N TK++G+ +VRGSGL L V+ D+ YA ++ DRRS +G+AV +G T +   + TQ      T +A         KEA+F R  L
Sbjct:   24 PTERMWNALVRIMSYLNETKDLGITYVRGSGLDLDVFVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTTEAEYIAAGEGVKEALFVRGVL 123
[Close]
BLAST of mRNA_F-serratus_M_contig1264.1987.1 vs. uniprot
Match: A0A6H5JU54_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU54_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 2.100e-14
Identity = 41/100 (41.00%), Postives = 61/100 (61.00%), Query Frame = 1 
Query:    1 PSPRHWKALLQVASYVNATKEIGLRFVRGSGLRLSVYADADYAAASNDRRSESGVAVVLGSTAISWKSNTQKCVTTVTCDA--------AKEAIFERSSL 276
            P+ R W AL+++ SY+N TK++G+ +VRGSGL L V+ D+ YA ++ DRRS +G+AV +G T +   + TQ      T +A         KEA+F R  L
Sbjct:  183 PTERMWNALVRIMSYLNETKDLGITYVRGSGLDLDVFVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTTEAEYIAGGEAVKEALFVRGVL 282
[Close]
BLAST of mRNA_F-serratus_M_contig1264.1987.1 vs. uniprot
Match: A0A6H5KCN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCN6_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 2.230e-14
Identity = 41/100 (41.00%), Postives = 61/100 (61.00%), Query Frame = 1 
Query:    1 PSPRHWKALLQVASYVNATKEIGLRFVRGSGLRLSVYADADYAAASNDRRSESGVAVVLGSTAISWKSNTQKCVTTVTCDA--------AKEAIFERSSL 276
            P+ R W AL+++ SY+N TK++G+ +VRGSGL L V+ D+ YA ++ DRRS +G+AV +G T +   + TQ      T +A         KEA+F R  L
Sbjct:  225 PTERMWNALVRIMSYLNETKDLGITYVRGSGLDLDVFVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTTEAEYIAAGEGVKEALFVRGVL 324
[Close]
BLAST of mRNA_F-serratus_M_contig1264.1987.1 vs. uniprot
Match: A0A6H5JUQ8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUQ8_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 2.410e-14
Identity = 41/100 (41.00%), Postives = 61/100 (61.00%), Query Frame = 1 
Query:    1 PSPRHWKALLQVASYVNATKEIGLRFVRGSGLRLSVYADADYAAASNDRRSESGVAVVLGSTAISWKSNTQKCVTTVTCDA--------AKEAIFERSSL 276
            P+ R W AL+++ SY+N TK++G+ +VRGSGL L V+ D+ YA ++ DRRS +G+AV +G T +   + TQ      T +A         KEA+F R  L
Sbjct:  278 PTERMWNALVRIMSYLNETKDLGITYVRGSGLDLDVFVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTTEAEYIAAGEGVKEALFVRGVL 377
[Close]
BLAST of mRNA_F-serratus_M_contig1264.1987.1 vs. uniprot
Match: A0A6H5KNB1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNB1_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 2.550e-14
Identity = 41/100 (41.00%), Postives = 61/100 (61.00%), Query Frame = 1 
Query:    1 PSPRHWKALLQVASYVNATKEIGLRFVRGSGLRLSVYADADYAAASNDRRSESGVAVVLGSTAISWKSNTQKCVTTVTCDA--------AKEAIFERSSL 276
            P+ R W AL+++ SY+N TK++G+ +VRGSGL L V+ D+ YA ++ DRRS +G+AV +G T +   + TQ      T +A         KEA+F R  L
Sbjct:  326 PTERMWNALVRIMSYLNETKDLGITYVRGSGLDLDVFVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTTEAEYIAAGEGVKEALFVRGVL 425
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1264.1987.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JKS3_9PHAE8.100e-1847.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L175_9PHAE8.180e-1847.00Uncharacterized protein n=9 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K588_9PHAE2.320e-1541.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KR64_9PHAE3.500e-1541.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRV3_9PHAE4.780e-1541.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K887_9PHAE5.620e-1541.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU54_9PHAE2.100e-1441.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KCN6_9PHAE2.230e-1441.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JUQ8_9PHAE2.410e-1441.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KNB1_9PHAE2.550e-1441.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1264contigF-serratus_M_contig1264:116608..116886 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score67.0
Seed ortholog evalue5.3e-09
Seed eggNOG ortholog5297.GMQ_25919T0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs2YC45@29000,38DPC@33154,3NUZ7@4751,3UY7N@5204,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPucciniomycotina
Best eggNOG OGNA|NA|NA
Exons1
Model size279
Cds size279
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929198.3419735-CDS-F-serratus_M_contig1264:116607..1168861622929198.3419735-CDS-F-serratus_M_contig1264:116607..116886Fucus serratus maleCDSF-serratus_M_contig1264 116608..116886 -
1690962746.5275774-CDS-F-serratus_M_contig1264:116607..1168861690962746.5275774-CDS-F-serratus_M_contig1264:116607..116886Fucus serratus maleCDSF-serratus_M_contig1264 116608..116886 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1264.1987.1prot_F-serratus_M_contig1264.1987.1Fucus serratus malepolypeptideF-serratus_M_contig1264 116608..116886 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1264.1987.1

>prot_F-serratus_M_contig1264.1987.1 ID=prot_F-serratus_M_contig1264.1987.1|Name=mRNA_F-serratus_M_contig1264.1987.1|organism=Fucus serratus male|type=polypeptide|length=93bp
PSPRHWKALLQVASYVNATKEIGLRFVRGSGLRLSVYADADYAAASNDRR
SESGVAVVLGSTAISWKSNTQKCVTTVTCDAAKEAIFERSSL*
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mRNA from alignment at F-serratus_M_contig1264:116608..116886-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1264.1987.1 ID=mRNA_F-serratus_M_contig1264.1987.1|Name=mRNA_F-serratus_M_contig1264.1987.1|organism=Fucus serratus male|type=mRNA|length=279bp|location=Sequence derived from alignment at F-serratus_M_contig1264:116608..116886- (Fucus serratus male)
CCTAGTCCGCGCCACTGGAAGGCGCTTTTGCAGGTAGCTTCGTATGTGAA
TGCGACGAAAGAGATTGGTTTGAGGTTCGTTCGGGGTTCTGGTTTGCGAT
TATCTGTGTACGCAGATGCTGACTACGCGGCGGCATCCAACGATCGAAGG
TCCGAGTCGGGTGTAGCGGTAGTTCTGGGTAGTACAGCAATAAGCTGGAA
AAGTAATACGCAGAAATGTGTGACGACTGTAACGTGTGATGCAGCAAAAG
AGGCGATATTCGAGAGGAGCAGTTTGTAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1264:116608..116886-

>mRNA_F-serratus_M_contig1264.1987.1 ID=mRNA_F-serratus_M_contig1264.1987.1|Name=mRNA_F-serratus_M_contig1264.1987.1|organism=Fucus serratus male|type=CDS|length=558bp|location=Sequence derived from alignment at F-serratus_M_contig1264:116608..116886- (Fucus serratus male)
CCTAGTCCGCGCCACTGGAAGGCGCTTTTGCAGGTAGCTTCGTATGTGAA
TGCGACGAAAGAGATTGGTTTGAGGTTCGTTCGGGGTTCTGGTTTGCGAT
TATCTGTGTACGCAGATGCTGACTACGCGGCGGCATCCAACGATCGAAGG
TCCGAGTCGGGTGTAGCGGTAGTTCTGGGTAGTACAGCAATAAGCTGGAA
AAGTAATACGCAGAAATGTGTGACGACTGTAACGTGTGATGCAGCAAAAG
AGGCGATATTCGAGAGGAGCAGTTTGTAGCCTAGTCCGCGCCACTGGAAG
GCGCTTTTGCAGGTAGCTTCGTATGTGAATGCGACGAAAGAGATTGGTTT
GAGGTTCGTTCGGGGTTCTGGTTTGCGATTATCTGTGTACGCAGATGCTG
ACTACGCGGCGGCATCCAACGATCGAAGGTCCGAGTCGGGTGTAGCGGTA
GTTCTGGGTAGTACAGCAATAAGCTGGAAAAGTAATACGCAGAAATGTGT
GACGACTGTAACGTGTGATGCAGCAAAAGAGGCGATATTCGAGAGGAGCA
GTTTGTAG
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