mRNA_F-serratus_M_contig848.19862.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig848.19862.1
Unique NamemRNA_F-serratus_M_contig848.19862.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig848.19862.1 vs. uniprot
Match: A0A2R4QQ71_9PHAE (Ribosomal protein L16 n=3 Tax=Fucus TaxID=3011 RepID=A0A2R4QQ71_9PHAE)

HSP 1 Score: 245 bits (625), Expect = 7.220e-82
Identity = 124/125 (99.20%), Postives = 124/125 (99.20%), Query Frame = 1 
Query:    4 MLQPKKTKYRKYFKPRILPKILAKTQKLNELNCFALIPIQSVYINGQQIEAARQNIRRKIKREGKLEIPILTDIPISRKPTAARMGKGKGKIHNWVASLSAGKPLFLLYGIIEEVGLPALQSGAN 378
            MLQPKKTKYRKYFKPRILPKILAKTQKLNELNC ALIPIQSVYINGQQIEAARQNIRRKIKREGKLEIPILTDIPISRKPTAARMGKGKGKIHNWVASLSAGKPLFLLYGIIEEVGLPALQSGAN
Sbjct:    1 MLQPKKTKYRKYFKPRILPKILAKTQKLNELNCLALIPIQSVYINGQQIEAARQNIRRKIKREGKLEIPILTDIPISRKPTAARMGKGKGKIHNWVASLSAGKPLFLLYGIIEEVGLPALQSGAN 125
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BLAST of mRNA_F-serratus_M_contig848.19862.1 vs. uniprot
Match: A0A1L2F1H6_9PHAE (RpL16 n=1 Tax=Coccophora langsdorfii TaxID=74099 RepID=A0A1L2F1H6_9PHAE)

HSP 1 Score: 187 bits (474), Expect = 7.740e-59
Identity = 93/123 (75.61%), Postives = 105/123 (85.37%), Query Frame = 1 
Query:   10 QPKKTKYRKYFKPRILPKILAKTQKLNELNCFALIPIQSVYINGQQIEAARQNIRRKIKREGKLEIPILTDIPISRKPTAARMGKGKGKIHNWVASLSAGKPLFLLYGIIEEVGLPALQSGAN 378
            QPKKTKYRKYFKPR LPK   KTQKL E +CFALI ++S YINGQQ+EAARQNIRRK+KREGKLEI +LTD  IS KPTAARMGKGKGK+ +WVAS+SAGKP+F LYGI  E G PAL++GAN
Sbjct:    4 QPKKTKYRKYFKPRSLPKNTTKTQKLAEHSCFALISLESGYINGQQLEAARQNIRRKVKREGKLEIALLTDKAISNKPTAARMGKGKGKVKHWVASISAGKPIFFLYGIDSERGFPALKAGAN 126
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BLAST of mRNA_F-serratus_M_contig848.19862.1 vs. uniprot
Match: A0A8F0K1B0_9PHAE (Ribosomal protein L16 n=1 Tax=Analipus japonicus TaxID=31333 RepID=A0A8F0K1B0_9PHAE)

HSP 1 Score: 186 bits (473), Expect = 1.100e-58
Identity = 92/124 (74.19%), Postives = 106/124 (85.48%), Query Frame = 1 
Query:    7 LQPKKTKYRKYFKPRILPKILAKTQKLNELNCFALIPIQSVYINGQQIEAARQNIRRKIKREGKLEIPILTDIPISRKPTAARMGKGKGKIHNWVASLSAGKPLFLLYGIIEEVGLPALQSGAN 378
            +QPKKTKYRKYFKPR LP    +TQ+L ELNCFALI  +S Y+NG+QIEAARQNIRRK+KREGKLEIP+  DIPISRK +AARMGKGKGKI +WVA+L AG+ +FLLYGI  E G+PALQSGAN
Sbjct:    3 IQPKKTKYRKYFKPRRLPSNSTQTQRLGELNCFALITTESGYLNGRQIEAARQNIRRKVKREGKLEIPVFPDIPISRKASAARMGKGKGKIDHWVAALPAGRTIFLLYGIDAEQGIPALQSGAN 126
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BLAST of mRNA_F-serratus_M_contig848.19862.1 vs. uniprot
Match: A0A0G2RKU9_TUROR (Ribosomal protein L16 n=1 Tax=Turbinaria ornata TaxID=86657 RepID=A0A0G2RKU9_TUROR)

HSP 1 Score: 183 bits (464), Expect = 2.580e-57
Identity = 89/125 (71.20%), Postives = 106/125 (84.80%), Query Frame = 1 
Query:    4 MLQPKKTKYRKYFKPRILPKILAKTQKLNELNCFALIPIQSVYINGQQIEAARQNIRRKIKREGKLEIPILTDIPISRKPTAARMGKGKGKIHNWVASLSAGKPLFLLYGIIEEVGLPALQSGAN 378
            +LQPKKTKYRKYFKPR+LPK   K +KLNE NCFALI + S +ING+Q+EAARQNIRRKIKREGKLEI +L D  IS KPT+ARMGKGKGK+H+W+A + AGKP+ LLYGI +E G PAL++GAN
Sbjct:    2 LLQPKKTKYRKYFKPRLLPKTTNKPKKLNEQNCFALISLASGHINGRQLEAARQNIRRKIKREGKLEIVLLPDKAISNKPTSARMGKGKGKVHHWIAPIPAGKPILLLYGIDKERGFPALKAGAN 126
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BLAST of mRNA_F-serratus_M_contig848.19862.1 vs. uniprot
Match: A0A1L6KXZ3_9PHAE (Ribosomal protein L16 n=11 Tax=Sargassaceae TaxID=3014 RepID=A0A1L6KXZ3_9PHAE)

HSP 1 Score: 182 bits (461), Expect = 7.390e-57
Identity = 88/125 (70.40%), Postives = 108/125 (86.40%), Query Frame = 1 
Query:    4 MLQPKKTKYRKYFKPRILPKILAKTQKLNELNCFALIPIQSVYINGQQIEAARQNIRRKIKREGKLEIPILTDIPISRKPTAARMGKGKGKIHNWVASLSAGKPLFLLYGIIEEVGLPALQSGAN 378
            +LQPKKTKY+KYFKPR+LP++  KTQKLNE NCFA+I ++S YI+ +Q+EAARQNIRRKIKREGKLEI  L D  IS KPT+ARMGKGKGK+++WVA +SAGKP+ LLYGI +E G PAL++GAN
Sbjct:    2 LLQPKKTKYKKYFKPRLLPRVTTKTQKLNEQNCFAIISLESGYIDVRQLEAARQNIRRKIKREGKLEIIPLADKAISNKPTSARMGKGKGKVNHWVAPISAGKPILLLYGIDKEQGFPALKAGAN 126
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BLAST of mRNA_F-serratus_M_contig848.19862.1 vs. uniprot
Match: A0A3S8PYI0_9PHAE (Ribosomal protein L16 n=5 Tax=Sargassum TaxID=3015 RepID=A0A3S8PYI0_9PHAE)

HSP 1 Score: 180 bits (456), Expect = 4.270e-56
Identity = 87/125 (69.60%), Postives = 106/125 (84.80%), Query Frame = 1 
Query:    4 MLQPKKTKYRKYFKPRILPKILAKTQKLNELNCFALIPIQSVYINGQQIEAARQNIRRKIKREGKLEIPILTDIPISRKPTAARMGKGKGKIHNWVASLSAGKPLFLLYGIIEEVGLPALQSGAN 378
            +LQPK+TKY+KYFKPR LPKI  K QKLNE NCFA+I ++S Y+N +Q+EAARQNIRRKIKREGKLEI  L D  IS KPT+ARMGKGKGK+++W+A +  GKP+FLLYGI +E GLPAL++GAN
Sbjct:    2 LLQPKRTKYKKYFKPRSLPKITTKAQKLNEQNCFAIISLESGYLNVKQLEAARQNIRRKIKREGKLEIVPLADKTISNKPTSARMGKGKGKVNHWIAPILVGKPIFLLYGIDKEQGLPALKAGAN 126
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BLAST of mRNA_F-serratus_M_contig848.19862.1 vs. uniprot
Match: A0A0U2M402_9PHAE (Ribosomal protein L16 n=18 Tax=Laminariales TaxID=2886 RepID=A0A0U2M402_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 8.070e-56
Identity = 90/124 (72.58%), Postives = 104/124 (83.87%), Query Frame = 1 
Query:    7 LQPKKTKYRKYFKPRILPKILAKTQKLNELNCFALIPIQSVYINGQQIEAARQNIRRKIKREGKLEIPILTDIPISRKPTAARMGKGKGKIHNWVASLSAGKPLFLLYGIIEEVGLPALQSGAN 378
            +QPKKTKYRKYFKPR LP    KT KL ELNCFA+I ++S Y+NG+QIEAARQNIRRK+KREGKLEI I  DI ISRK +AARMGKGKGK+ +W+AS+SAG+ LFLLYGI  E G+PAL SGAN
Sbjct:    1 MQPKKTKYRKYFKPRGLPNTSTKTHKLTELNCFAVILMESGYLNGRQIEAARQNIRRKVKREGKLEILIFPDIAISRKASAARMGKGKGKVDHWIASVSAGQNLFLLYGIDAEQGIPALHSGAN 124
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BLAST of mRNA_F-serratus_M_contig848.19862.1 vs. uniprot
Match: A0A068LH27_9PHAE (Ribosomal protein L16 n=3 Tax=Sargassum TaxID=3015 RepID=A0A068LH27_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 8.600e-56
Identity = 90/125 (72.00%), Postives = 106/125 (84.80%), Query Frame = 1 
Query:    4 MLQPKKTKYRKYFKPRILPKILAKTQKLNELNCFALIPIQSVYINGQQIEAARQNIRRKIKREGKLEIPILTDIPISRKPTAARMGKGKGKIHNWVASLSAGKPLFLLYGIIEEVGLPALQSGAN 378
            +LQPKKTKY+KYFKPR LPKI  KTQKL+E  CFA+I ++S YIN QQ+EAARQNIRRKIKREGKLEI  L D  IS KPT+ARMGKGKGK+++WVA + AGKPL LL+GI +E GLPAL++GAN
Sbjct:    2 LLQPKKTKYKKYFKPRALPKITTKTQKLSEPGCFAIISLESGYINVQQLEAARQNIRRKIKREGKLEILPLADKAISNKPTSARMGKGKGKVNHWVAPILAGKPLLLLHGINKEQGLPALKAGAN 126
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BLAST of mRNA_F-serratus_M_contig848.19862.1 vs. uniprot
Match: A0A089N0Z2_PETFA (Ribosomal protein L16 n=4 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A089N0Z2_PETFA)

HSP 1 Score: 179 bits (454), Expect = 8.600e-56
Identity = 89/125 (71.20%), Postives = 107/125 (85.60%), Query Frame = 1 
Query:    4 MLQPKKTKYRKYFKPRILPKILAKTQKLNELNCFALIPIQSVYINGQQIEAARQNIRRKIKREGKLEIPILTDIPISRKPTAARMGKGKGKIHNWVASLSAGKPLFLLYGIIEEVGLPALQSGAN 378
            ++QPKKTKYRKYFKPR LPK   KTQKL ELN FALI ++S ++NG+QIEAARQNIRRK+KREGKLEI +  DI ISRK +AARMGKGKGK+ +WVA+LSAG+ +FLLYG+  E G+PAL+SGAN
Sbjct:    2 LIQPKKTKYRKYFKPRGLPKSSTKTQKLKELNYFALIAMESGFLNGKQIEAARQNIRRKVKREGKLEILVFPDIAISRKASAARMGKGKGKVDHWVAALSAGRTVFLLYGVDAEQGIPALRSGAN 126
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BLAST of mRNA_F-serratus_M_contig848.19862.1 vs. uniprot
Match: F8UWL8_9PHAE (Ribosomal protein L16 n=20 Tax=Saccharina TaxID=309357 RepID=F8UWL8_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 6.620e-55
Identity = 88/124 (70.97%), Postives = 103/124 (83.06%), Query Frame = 1 
Query:    7 LQPKKTKYRKYFKPRILPKILAKTQKLNELNCFALIPIQSVYINGQQIEAARQNIRRKIKREGKLEIPILTDIPISRKPTAARMGKGKGKIHNWVASLSAGKPLFLLYGIIEEVGLPALQSGAN 378
            +QPKKTKYRKYFKPR LP    KT KL EL CFA+I + S Y+NG+QIE+ARQNIRRK+KREGKLEI I  DI ISRK +AARMGKGKGK+ +W+AS+SAG+ LFLLYGI +E G+PAL SGAN
Sbjct:    1 MQPKKTKYRKYFKPRGLPNTSGKTHKLTELTCFAVIAMGSGYLNGRQIESARQNIRRKVKREGKLEILIFPDIAISRKASAARMGKGKGKVDHWIASISAGQTLFLLYGIDDEQGIPALHSGAN 124
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig848.19862.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2R4QQ71_9PHAE7.220e-8299.20Ribosomal protein L16 n=3 Tax=Fucus TaxID=3011 Rep... [more]
A0A1L2F1H6_9PHAE7.740e-5975.61RpL16 n=1 Tax=Coccophora langsdorfii TaxID=74099 R... [more]
A0A8F0K1B0_9PHAE1.100e-5874.19Ribosomal protein L16 n=1 Tax=Analipus japonicus T... [more]
A0A0G2RKU9_TUROR2.580e-5771.20Ribosomal protein L16 n=1 Tax=Turbinaria ornata Ta... [more]
A0A1L6KXZ3_9PHAE7.390e-5770.40Ribosomal protein L16 n=11 Tax=Sargassaceae TaxID=... [more]
A0A3S8PYI0_9PHAE4.270e-5669.60Ribosomal protein L16 n=5 Tax=Sargassum TaxID=3015... [more]
A0A0U2M402_9PHAE8.070e-5672.58Ribosomal protein L16 n=18 Tax=Laminariales TaxID=... [more]
A0A068LH27_9PHAE8.600e-5672.00Ribosomal protein L16 n=3 Tax=Sargassum TaxID=3015... [more]
A0A089N0Z2_PETFA8.600e-5671.20Ribosomal protein L16 n=4 Tax=Scytosiphonaceae Tax... [more]
F8UWL8_9PHAE6.620e-5570.97Ribosomal protein L16 n=20 Tax=Saccharina TaxID=30... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig848contigF-serratus_M_contig848:99991..100377 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score100.5
Seed ortholog evalue5.9e-19
Seed eggNOG ortholog1261131.lam_936
Preferred namerplP
KEGG koko:K02878
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0000049,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
EggNOG OGs1RA0Z@1224,2U710@28211,4BE8R@82115,COG0197@1,COG0197@2
COG Functional cat.J
Best tax levelRhizobiaceae
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size387
Cds size384
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932497.3007507-UTR-F-serratus_M_contig848:99990..999931622932497.3007507-UTR-F-serratus_M_contig848:99990..99993Fucus serratus maleUTRF-serratus_M_contig848 99991..99993 +
1690964337.1006663-UTR-F-serratus_M_contig848:99990..999931690964337.1006663-UTR-F-serratus_M_contig848:99990..99993Fucus serratus maleUTRF-serratus_M_contig848 99991..99993 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932497.3160596-CDS-F-serratus_M_contig848:99993..1003771622932497.3160596-CDS-F-serratus_M_contig848:99993..100377Fucus serratus maleCDSF-serratus_M_contig848 99994..100377 +
1690964337.1137464-CDS-F-serratus_M_contig848:99993..1003771690964337.1137464-CDS-F-serratus_M_contig848:99993..100377Fucus serratus maleCDSF-serratus_M_contig848 99994..100377 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig848.19862.1prot_F-serratus_M_contig848.19862.1Fucus serratus malepolypeptideF-serratus_M_contig848 99994..100377 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig848.19862.1

>prot_F-serratus_M_contig848.19862.1 ID=prot_F-serratus_M_contig848.19862.1|Name=mRNA_F-serratus_M_contig848.19862.1|organism=Fucus serratus male|type=polypeptide|length=128bp
MLQPKKTKYRKYFKPRILPKILAKTQKLNELNCFALIPIQSVYINGQQIE
AARQNIRRKIKREGKLEIPILTDIPISRKPTAARMGKGKGKIHNWVASLS
AGKPLFLLYGIIEEVGLPALQSGANVF*
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mRNA from alignment at F-serratus_M_contig848:99991..100377+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig848.19862.1 ID=mRNA_F-serratus_M_contig848.19862.1|Name=mRNA_F-serratus_M_contig848.19862.1|organism=Fucus serratus male|type=mRNA|length=387bp|location=Sequence derived from alignment at F-serratus_M_contig848:99991..100377+ (Fucus serratus male)
TTTATGCTGCAACCAAAAAAAACAAAATATAGAAAATATTTTAAACCAAG
AATCTTGCCTAAAATTTTGGCTAAAACCCAAAAATTAAATGAACTTAATT
GCTTCGCTTTAATACCTATACAATCTGTATATATTAACGGACAACAAATA
GAAGCAGCTCGTCAAAATATAAGACGGAAAATAAAACGAGAAGGAAAATT
AGAAATTCCTATTTTAACCGACATACCAATAAGTCGCAAACCGACAGCAG
CTAGAATGGGAAAAGGTAAAGGAAAAATTCATAATTGGGTTGCCTCTTTA
TCCGCAGGAAAACCCCTGTTTCTACTTTACGGTATAATTGAAGAAGTTGG
TCTTCCAGCTCTTCAATCTGGCGCCAACGTATTCTAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig848:99991..100377+

>mRNA_F-serratus_M_contig848.19862.1 ID=mRNA_F-serratus_M_contig848.19862.1|Name=mRNA_F-serratus_M_contig848.19862.1|organism=Fucus serratus male|type=CDS|length=768bp|location=Sequence derived from alignment at F-serratus_M_contig848:99991..100377+ (Fucus serratus male)
ATGCTGCAACCAAAAAAAACAAAATATAGAAAATATTTTAAACCAAGAAT
CTTGCCTAAAATTTTGGCTAAAACCCAAAAATTAAATGAACTTAATTGCT
TCGCTTTAATACCTATACAATCTGTATATATTAACGGACAACAAATAGAA
GCAGCTCGTCAAAATATAAGACGGAAAATAAAACGAGAAGGAAAATTAGA
AATTCCTATTTTAACCGACATACCAATAAGTCGCAAACCGACAGCAGCTA
GAATGGGAAAAGGTAAAGGAAAAATTCATAATTGGGTTGCCTCTTTATCC
GCAGGAAAACCCCTGTTTCTACTTTACGGTATAATTGAAGAAGTTGGTCT
TCCAGCTCTTCAATCTGGCGCCAACGTATTCTAAATGCTGCAACCAAAAA
AAACAAAATATAGAAAATATTTTAAACCAAGAATCTTGCCTAAAATTTTG
GCTAAAACCCAAAAATTAAATGAACTTAATTGCTTCGCTTTAATACCTAT
ACAATCTGTATATATTAACGGACAACAAATAGAAGCAGCTCGTCAAAATA
TAAGACGGAAAATAAAACGAGAAGGAAAATTAGAAATTCCTATTTTAACC
GACATACCAATAAGTCGCAAACCGACAGCAGCTAGAATGGGAAAAGGTAA
AGGAAAAATTCATAATTGGGTTGCCTCTTTATCCGCAGGAAAACCCCTGT
TTCTACTTTACGGTATAATTGAAGAAGTTGGTCTTCCAGCTCTTCAATCT
GGCGCCAACGTATTCTAA
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