mRNA_F-serratus_M_contig8472.19857.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig8472.19857.1 vs. uniprot
Match: A0A6H5JEW8_9PHAE (53EXOc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEW8_9PHAE) HSP 1 Score: 74.7 bits (182), Expect = 1.010e-14 Identity = 35/50 (70.00%), Postives = 41/50 (82.00%), Query Frame = 1
Query: 1 KPRYVAMAFDVGRETTFRRAMFPAYKAQRKPIPIDLELQVRRRAAGSRSL 150
KPRYVAMAFDVGRETTFRR ++P YKAQRKP+P+DL LQ+ A S +L
Sbjct: 65 KPRYVAMAFDVGRETTFRRKLYPQYKAQRKPVPLDLTLQIPLAKALSEAL 114
BLAST of mRNA_F-serratus_M_contig8472.19857.1 vs. uniprot
Match: A0A835ZC56_9STRA (5'-3' exonuclease n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC56_9STRA) HSP 1 Score: 52.8 bits (125), Expect = 9.920e-7 Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = 1
Query: 1 KPRYVAMAFDVGRETTFRRAMFPAYKAQRKPIPIDLELQV 120
+PRY+A+AFDV R +TFRR + P YKA R P P DL LQ+
Sbjct: 113 QPRYLAVAFDVDRNSTFRRQLMPTYKAHRPPHPRDLLLQL 152
BLAST of mRNA_F-serratus_M_contig8472.19857.1 vs. uniprot
Match: A0A829YDL9_9GAMM (Exodeoxyribonuclease IX n=4 Tax=Steroidobacter TaxID=469322 RepID=A0A829YDL9_9GAMM) HSP 1 Score: 52.0 bits (123), Expect = 2.400e-6 Identity = 20/39 (51.28%), Postives = 31/39 (79.49%), Query Frame = 1
Query: 1 KPRYVAMAFDVGRETTFRRAMFPAYKAQRKPIPIDLELQ 117
+P ++A+AFD G T+FR+ ++PAYKA R+P P+DL+ Q
Sbjct: 58 RPEHIAVAFDAGLVTSFRKRLYPAYKANREPAPVDLKRQ 96
BLAST of mRNA_F-serratus_M_contig8472.19857.1 vs. uniprot
Match: A0A353MEJ4_9DELT (Ribonuclease H n=2 Tax=Geobacteraceae TaxID=213422 RepID=A0A353MEJ4_9DELT) HSP 1 Score: 49.3 bits (116), Expect = 2.270e-5 Identity = 22/40 (55.00%), Postives = 29/40 (72.50%), Query Frame = 1
Query: 1 KPRYVAMAFDVGRETTFRRAMFPAYKAQRKPIPIDLELQV 120
+P Y A+ FD RE TFRR ++PAYKA R+ +P DL LQ+
Sbjct: 52 RPEYFAVVFDPPREETFRRDIYPAYKAHREAVPEDLLLQL 91
BLAST of mRNA_F-serratus_M_contig8472.19857.1 vs. uniprot
Match: A0A1W9QFG2_9DELT (DNA polymerase I n=1 Tax=Sorangiineae bacterium NIC37A_2 TaxID=1970199 RepID=A0A1W9QFG2_9DELT) HSP 1 Score: 49.3 bits (116), Expect = 2.290e-5 Identity = 26/54 (48.15%), Postives = 36/54 (66.67%), Query Frame = 1
Query: 1 KPRYVAMAFDVGRETTFRRAMFPAYKAQRKPIPIDLELQVRRRAAGSRSLDLWI 162
+P +A+A D GRET FRR ++PAYKA R P P DL +Q++R A R+ L +
Sbjct: 64 EPALLAVAMDSGRET-FRREIYPAYKATRPPAPPDLRIQMQRAEAIVRAWGLTV 116
BLAST of mRNA_F-serratus_M_contig8472.19857.1 vs. uniprot
Match: A0A7D7VJI8_9GAMM (Flap endonuclease n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7D7VJI8_9GAMM) HSP 1 Score: 48.9 bits (115), Expect = 2.990e-5 Identity = 21/41 (51.22%), Postives = 28/41 (68.29%), Query Frame = 1
Query: 1 KPRYVAMAFDVGRETTFRRAMFPAYKAQRKPIPIDLELQVR 123
KP+YVA FD +++FR MFP YKA R P PI+L+ Q +
Sbjct: 51 KPKYVAFTFDESLKSSFRNEMFPEYKANRDPAPIELKRQFK 91
BLAST of mRNA_F-serratus_M_contig8472.19857.1 vs. uniprot
Match: UPI0019347F8C (Uncharacterized protein n=2 Tax=Steroidobacter gossypii TaxID=2805490 RepID=UPI0019347F8C) HSP 1 Score: 48.9 bits (115), Expect = 3.010e-5 Identity = 22/49 (44.90%), Postives = 34/49 (69.39%), Query Frame = 1
Query: 1 KPRYVAMAFDVGRETTFRRAMFPAYKAQRKPIPIDLE---LQVRRRAAG 138
+P ++A+AFD T+FR ++PAYKA R+P P++L+ LQ +R AG
Sbjct: 58 RPEHIAVAFDASLVTSFRNRLYPAYKANREPAPVELKRQFLQCQRVCAG 106
BLAST of mRNA_F-serratus_M_contig8472.19857.1 vs. uniprot
Match: UPI00198C550E (Exodeoxyribonuclease IX n=1 Tax=Candidatus Obscuribacterales bacterium TaxID=2364082 RepID=UPI00198C550E) HSP 1 Score: 48.9 bits (115), Expect = 3.020e-5 Identity = 19/39 (48.72%), Postives = 29/39 (74.36%), Query Frame = 1
Query: 1 KPRYVAMAFDVGRETTFRRAMFPAYKAQRKPIPIDLELQ 117
+P ++A+AFD T+FR ++PAYKA R+P P+DL+ Q
Sbjct: 60 RPSHIAVAFDASLTTSFRNRLYPAYKANREPAPVDLKKQ 98
BLAST of mRNA_F-serratus_M_contig8472.19857.1 vs. uniprot
Match: UPI00199229E3 (Exodeoxyribonuclease IX n=2 Tax=Luteimonas terricola TaxID=645597 RepID=UPI00199229E3) HSP 1 Score: 48.9 bits (115), Expect = 3.040e-5 Identity = 19/39 (48.72%), Postives = 30/39 (76.92%), Query Frame = 1
Query: 1 KPRYVAMAFDVGRETTFRRAMFPAYKAQRKPIPIDLELQ 117
+PR++A+AFD ++ FR A++PAYKA R P P++L+ Q
Sbjct: 62 RPRHIAIAFDEALDSCFRNALYPAYKANRDPAPVELKRQ 100
BLAST of mRNA_F-serratus_M_contig8472.19857.1 vs. uniprot
Match: A0A2N2FWJ9_9DELT (Ribonuclease H n=1 Tax=Deltaproteobacteria bacterium HGW-Deltaproteobacteria-4 TaxID=2013754 RepID=A0A2N2FWJ9_9DELT) HSP 1 Score: 48.5 bits (114), Expect = 4.250e-5 Identity = 21/36 (58.33%), Postives = 27/36 (75.00%), Query Frame = 1
Query: 1 KPRYVAMAFDVGRETTFRRAMFPAYKAQRKPIPIDL 108
+P Y+A+ D RE TFRRA++PAYKAQR +P DL
Sbjct: 52 RPDYLAVVLDGPREETFRRALYPAYKAQRDAVPADL 87 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig8472.19857.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig8472.19857.1 >prot_F-serratus_M_contig8472.19857.1 ID=prot_F-serratus_M_contig8472.19857.1|Name=mRNA_F-serratus_M_contig8472.19857.1|organism=Fucus serratus male|type=polypeptide|length=48bp MAFDVGRETTFRRAMFPAYKAQRKPIPIDLELQVRRRAAGSRSLDLWIback to top mRNA from alignment at F-serratus_M_contig8472:507..668- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig8472.19857.1 ID=mRNA_F-serratus_M_contig8472.19857.1|Name=mRNA_F-serratus_M_contig8472.19857.1|organism=Fucus serratus male|type=mRNA|length=162bp|location=Sequence derived from alignment at F-serratus_M_contig8472:507..668- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig8472:507..668- >mRNA_F-serratus_M_contig8472.19857.1 ID=mRNA_F-serratus_M_contig8472.19857.1|Name=mRNA_F-serratus_M_contig8472.19857.1|organism=Fucus serratus male|type=CDS|length=288bp|location=Sequence derived from alignment at F-serratus_M_contig8472:507..668- (Fucus serratus male)back to top |