mRNA_F-serratus_M_contig8461.19842.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig8461.19842.1
Unique NamemRNA_F-serratus_M_contig8461.19842.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig8461.19842.1 vs. uniprot
Match: A0A0N4THB6_BRUPA (Uncharacterized protein n=1 Tax=Brugia pahangi TaxID=6280 RepID=A0A0N4THB6_BRUPA)

HSP 1 Score: 55.1 bits (131), Expect = 8.730e-9
Identity = 23/36 (63.89%), Postives = 29/36 (80.56%), Query Frame = 1
Query:   73 RPYHVDCTTSRPLCEVKRRRAGLVLRWGTTWEAPVL 180
            RPYHV+ TTSRP+C+V++R AGLVL   T WE+ VL
Sbjct:   15 RPYHVESTTSRPICQVRQRSAGLVLGSETAWESQVL 50          
BLAST of mRNA_F-serratus_M_contig8461.19842.1 vs. uniprot
Match: A0A3S0ZIY3_ELYCH (Uncharacterized protein (Fragment) n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A3S0ZIY3_ELYCH)

HSP 1 Score: 55.8 bits (133), Expect = 1.400e-8
Identity = 28/47 (59.57%), Postives = 31/47 (65.96%), Query Frame = 1
Query:   40 YKLFFAGLVQERPYHVDCTTSRPLCEVKRRRAGLVLRWGTTWEAPVL 180
            YK     L   RPYHV+ T SRP+ EVK+RRA LVLRW T WE  VL
Sbjct:   54 YKPSLICLCCLRPYHVENTGSRPITEVKQRRAWLVLRWVTAWEHHVL 100          
BLAST of mRNA_F-serratus_M_contig8461.19842.1 vs. uniprot
Match: A0A183UVC8_TOXCA (Uncharacterized protein n=1 Tax=Toxocara canis TaxID=6265 RepID=A0A183UVC8_TOXCA)

HSP 1 Score: 55.1 bits (131), Expect = 2.800e-8
Identity = 27/46 (58.70%), Postives = 31/46 (67.39%), Query Frame = 1
Query:   43 KLFFAGLVQERPYHVDCTTSRPLCEVKRRRAGLVLRWGTTWEAPVL 180
            K  FA     RPYHV+ TTSRP+C VK+RRA LVL   T WE+ VL
Sbjct:   55 KCAFAVTTCLRPYHVENTTSRPICHVKQRRAWLVLGSETAWESQVL 100          
BLAST of mRNA_F-serratus_M_contig8461.19842.1 vs. uniprot
Match: V4BHB9_LOTGI (Uncharacterized protein (Fragment) n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4BHB9_LOTGI)

HSP 1 Score: 54.7 bits (130), Expect = 3.230e-8
Identity = 28/46 (60.87%), Postives = 32/46 (69.57%), Query Frame = 1
Query:   43 KLFFAGLVQERPYHVDCTTSRPLCEVKRRRAGLVLRWGTTWEAPVL 180
            KL F  L   RPYHV+ T+SRP+ EVK+RRA LVL W T WE  VL
Sbjct:   49 KLIFLCL---RPYHVENTSSRPITEVKQRRARLVLGWVTAWEHRVL 91          
BLAST of mRNA_F-serratus_M_contig8461.19842.1 vs. uniprot
Match: A0A3S0Z3S7_ELYCH (Uncharacterized protein (Fragment) n=2 Tax=Elysia chlorotica TaxID=188477 RepID=A0A3S0Z3S7_ELYCH)

HSP 1 Score: 53.5 bits (127), Expect = 5.900e-8
Identity = 23/32 (71.88%), Postives = 26/32 (81.25%), Query Frame = 1
Query:   73 RPYHVDCTTSRPLCEVKRRRAGLVLRWGTTWE 168
            RPYHV+ T SRP+ EVK+RRA LVLRW T WE
Sbjct:    1 RPYHVENTGSRPITEVKQRRAWLVLRWVTAWE 32          
BLAST of mRNA_F-serratus_M_contig8461.19842.1 vs. uniprot
Match: A0A0N4TUH7_BRUPA (Uncharacterized protein n=1 Tax=Brugia pahangi TaxID=6280 RepID=A0A0N4TUH7_BRUPA)

HSP 1 Score: 52.8 bits (125), Expect = 6.190e-8
Identity = 24/39 (61.54%), Postives = 29/39 (74.36%), Query Frame = 1
Query:   64 VQERPYHVDCTTSRPLCEVKRRRAGLVLRWGTTWEAPVL 180
            V  RPYHV+ TTSRP+C+VK+R A LVL   T WE+ VL
Sbjct:    5 VNLRPYHVESTTSRPICQVKQRWAWLVLGSETAWESQVL 43          
BLAST of mRNA_F-serratus_M_contig8461.19842.1 vs. uniprot
Match: A0A816YMV4_9BILA (Hypothetical protein n=1 Tax=Rotaria magnacalcarata TaxID=392030 RepID=A0A816YMV4_9BILA)

HSP 1 Score: 52.8 bits (125), Expect = 7.160e-8
Identity = 23/35 (65.71%), Postives = 27/35 (77.14%), Query Frame = 1
Query:   73 RPYHVDCTTSRPLCEVKRRRAGLVLRWGTTWEAPV 177
            RPYHV+ T+SRP+ EVK+RRA LVL W T WE  V
Sbjct:    1 RPYHVEYTSSRPITEVKQRRARLVLGWVTAWEYRV 35          
BLAST of mRNA_F-serratus_M_contig8461.19842.1 vs. uniprot
Match: A0A0N4TUI9_BRUPA (Uncharacterized protein n=3 Tax=Brugia TaxID=6278 RepID=A0A0N4TUI9_BRUPA)

HSP 1 Score: 52.4 bits (124), Expect = 7.850e-8
Identity = 23/36 (63.89%), Postives = 28/36 (77.78%), Query Frame = 1
Query:   73 RPYHVDCTTSRPLCEVKRRRAGLVLRWGTTWEAPVL 180
            RPYHV+ TTSRP+C+VK+R A LVL   T WE+ VL
Sbjct:    2 RPYHVESTTSRPICQVKQRWAWLVLGSETAWESQVL 37          
BLAST of mRNA_F-serratus_M_contig8461.19842.1 vs. uniprot
Match: A8NMS7_BRUMA (Uncharacterized protein n=3 Tax=Brugia TaxID=6278 RepID=A8NMS7_BRUMA)

HSP 1 Score: 52.4 bits (124), Expect = 9.340e-8
Identity = 23/36 (63.89%), Postives = 28/36 (77.78%), Query Frame = 1
Query:   73 RPYHVDCTTSRPLCEVKRRRAGLVLRWGTTWEAPVL 180
            RPYHV+ TTSRP+C+VK+R A LVL   T WE+ VL
Sbjct:   11 RPYHVESTTSRPICQVKQRWAWLVLGSETAWESQVL 46          
BLAST of mRNA_F-serratus_M_contig8461.19842.1 vs. uniprot
Match: A0A815TME6_ADIRI (Hypothetical protein n=2 Tax=Adineta ricciae TaxID=249248 RepID=A0A815TME6_ADIRI)

HSP 1 Score: 54.3 bits (129), Expect = 5.080e-7
Identity = 24/37 (64.86%), Postives = 28/37 (75.68%), Query Frame = 1
Query:   67 QERPYHVDCTTSRPLCEVKRRRAGLVLRWGTTWEAPV 177
            Q RPYHV+ T+SRP+ EVK+RRA LVL W T WE  V
Sbjct:  243 QPRPYHVEYTSSRPITEVKQRRARLVLGWVTAWEYRV 279          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig8461.19842.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A0N4THB6_BRUPA8.730e-963.89Uncharacterized protein n=1 Tax=Brugia pahangi Tax... [more]
A0A3S0ZIY3_ELYCH1.400e-859.57Uncharacterized protein (Fragment) n=1 Tax=Elysia ... [more]
A0A183UVC8_TOXCA2.800e-858.70Uncharacterized protein n=1 Tax=Toxocara canis Tax... [more]
V4BHB9_LOTGI3.230e-860.87Uncharacterized protein (Fragment) n=1 Tax=Lottia ... [more]
A0A3S0Z3S7_ELYCH5.900e-871.88Uncharacterized protein (Fragment) n=2 Tax=Elysia ... [more]
A0A0N4TUH7_BRUPA6.190e-861.54Uncharacterized protein n=1 Tax=Brugia pahangi Tax... [more]
A0A816YMV4_9BILA7.160e-865.71Hypothetical protein n=1 Tax=Rotaria magnacalcarat... [more]
A0A0N4TUI9_BRUPA7.850e-863.89Uncharacterized protein n=3 Tax=Brugia TaxID=6278 ... [more]
A8NMS7_BRUMA9.340e-863.89Uncharacterized protein n=3 Tax=Brugia TaxID=6278 ... [more]
A0A815TME6_ADIRI5.080e-764.86Hypothetical protein n=2 Tax=Adineta ricciae TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig8461contigF-serratus_M_contig8461:6793..6984 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size192
Cds size192
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932492.7007551-CDS-F-serratus_M_contig8461:6792..69841622932492.7007551-CDS-F-serratus_M_contig8461:6792..6984Fucus serratus maleCDSF-serratus_M_contig8461 6793..6984 -
1690964335.3087626-CDS-F-serratus_M_contig8461:6792..69841690964335.3087626-CDS-F-serratus_M_contig8461:6792..6984Fucus serratus maleCDSF-serratus_M_contig8461 6793..6984 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig8461.19842.1prot_F-serratus_M_contig8461.19842.1Fucus serratus malepolypeptideF-serratus_M_contig8461 6793..6984 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig8461.19842.1

>prot_F-serratus_M_contig8461.19842.1 ID=prot_F-serratus_M_contig8461.19842.1|Name=mRNA_F-serratus_M_contig8461.19842.1|organism=Fucus serratus male|type=polypeptide|length=64bp
RKPPWKKVNVLCFYKLFFAGLVQERPYHVDCTTSRPLCEVKRRRAGLVLR
WGTTWEAPVLFLF*
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mRNA from alignment at F-serratus_M_contig8461:6793..6984-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig8461.19842.1 ID=mRNA_F-serratus_M_contig8461.19842.1|Name=mRNA_F-serratus_M_contig8461.19842.1|organism=Fucus serratus male|type=mRNA|length=192bp|location=Sequence derived from alignment at F-serratus_M_contig8461:6793..6984- (Fucus serratus male)
CGAAAACCACCGTGGAAGAAGGTGAACGTACTATGTTTTTATAAGCTGTT TTTCGCCGGTCTCGTTCAGGAACGGCCATACCACGTTGACTGCACCACAT CCCGTCCGCTCTGTGAAGTTAAGCGGCGTCGGGCCGGGCTAGTACTACGG TGGGGGACCACGTGGGAAGCCCCGGTGCTGTTCCTTTTTTAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig8461:6793..6984-

>mRNA_F-serratus_M_contig8461.19842.1 ID=mRNA_F-serratus_M_contig8461.19842.1|Name=mRNA_F-serratus_M_contig8461.19842.1|organism=Fucus serratus male|type=CDS|length=384bp|location=Sequence derived from alignment at F-serratus_M_contig8461:6793..6984- (Fucus serratus male)
CGAAAACCACCGTGGAAGAAGGTGAACGTACTATGTTTTTATAAGCTGTT
TTTCGCCGGTCTCGTTCAGGAACGGCCATACCACGTTGACTGCACCACAT
CCCGTCCGCTCTGTGAAGTTAAGCGGCGTCGGGCCGGGCTAGTACTACGG
TGGGGGACCACGTGGGAAGCCCCGGTGCTGTTCCTTTTTTAACGAAAACC
ACCGTGGAAGAAGGTGAACGTACTATGTTTTTATAAGCTGTTTTTCGCCG
GTCTCGTTCAGGAACGGCCATACCACGTTGACTGCACCACATCCCGTCCG
CTCTGTGAAGTTAAGCGGCGTCGGGCCGGGCTAGTACTACGGTGGGGGAC
CACGTGGGAAGCCCCGGTGCTGTTCCTTTTTTAA
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