mRNA_F-serratus_M_contig1261.1984.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1261.1984.1
Unique NamemRNA_F-serratus_M_contig1261.1984.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig1261.1984.1 vs. uniprot
Match: UPI001F8D56D1 (Uncharacterized protein n=1 Tax=Spodoptera exigua TaxID=7107 RepID=UPI001F8D56D1)

HSP 1 Score: 58.9 bits (141), Expect = 4.180e-7
Identity = 41/159 (25.79%), Postives = 74/159 (46.54%), Query Frame = 1 
Query:    1 VNAEKLASEAWAKPVQHYQASGLKERRRLTLVFYTTKMELGEHPRKFLLCMDQMVKELERVDRPVDPKDIDIVILSGLTPQYDAEVRMLESSSDWPTREWVERAVINQYERLESEKSSAGSRAMLSTRGHRRNDTPPTRCLLCSRTEHSALKCREFQIT 477
            +   K A EAW    + Y+  GL  +  L    + TK+        +L  + ++  +L  ++ P+D + I ++ILSGLT  YD  +  +E+S    T E V   ++ + +R E ++   G  A+++ +          +C  C R  H +  C E +IT
Sbjct:   69 IRTAKSAYEAWNNLKKTYEGKGLCRKLGLLRSLFGTKLADSNSMDGYLNKIKEVAHQLSEIESPLDDEFIAVIILSGLTSDYDPLIMAIENSGQKLTTEHVSAKLLQETQRREDKQD--GVTALVTRK--------QIKCFRCKRPGHYSRNCTEKKIT 217
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1261.1984.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001F8D56D14.180e-725.79Uncharacterized protein n=1 Tax=Spodoptera exigua ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1261contigF-serratus_M_contig1261:265133..265633 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size501
Cds size501
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929197.9334161-CDS-F-serratus_M_contig1261:265132..2656331622929197.9334161-CDS-F-serratus_M_contig1261:265132..265633Fucus serratus maleCDSF-serratus_M_contig1261 265133..265633 -
1690962746.3409429-CDS-F-serratus_M_contig1261:265132..2656331690962746.3409429-CDS-F-serratus_M_contig1261:265132..265633Fucus serratus maleCDSF-serratus_M_contig1261 265133..265633 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1261.1984.1prot_F-serratus_M_contig1261.1984.1Fucus serratus malepolypeptideF-serratus_M_contig1261 265133..265633 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1261.1984.1

>prot_F-serratus_M_contig1261.1984.1 ID=prot_F-serratus_M_contig1261.1984.1|Name=mRNA_F-serratus_M_contig1261.1984.1|organism=Fucus serratus male|type=polypeptide|length=167bp
VNAEKLASEAWAKPVQHYQASGLKERRRLTLVFYTTKMELGEHPRKFLLC
MDQMVKELERVDRPVDPKDIDIVILSGLTPQYDAEVRMLESSSDWPTREW
VERAVINQYERLESEKSSAGSRAMLSTRGHRRNDTPPTRCLLCSRTEHSA
LKCREFQITRREEKPNR
back to top

mRNA from alignment at F-serratus_M_contig1261:265133..265633-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1261.1984.1 ID=mRNA_F-serratus_M_contig1261.1984.1|Name=mRNA_F-serratus_M_contig1261.1984.1|organism=Fucus serratus male|type=mRNA|length=501bp|location=Sequence derived from alignment at F-serratus_M_contig1261:265133..265633- (Fucus serratus male)
GTGAATGCGGAAAAATTAGCCAGCGAAGCATGGGCCAAACCCGTACAGCA
CTACCAGGCCAGTGGACTCAAGGAGCGCCGACGTCTCACCCTTGTTTTTT
ACACGACAAAGATGGAGCTCGGAGAACATCCGAGGAAGTTCCTGCTTTGC
ATGGATCAAATGGTGAAGGAACTGGAGCGAGTGGACCGGCCCGTGGACCC
AAAGGACATCGACATCGTCATTCTAAGTGGACTTACGCCGCAGTACGACG
CCGAAGTTCGCATGCTAGAGAGCTCATCGGATTGGCCCACGCGGGAATGG
GTCGAGCGTGCTGTGATAAACCAGTACGAGCGGCTGGAAAGCGAGAAATC
TTCCGCCGGGAGCAGGGCGATGTTGTCCACACGCGGCCACCGCCGCAACG
ATACACCCCCCACCCGATGCCTCCTTTGTTCCCGCACAGAACACTCTGCC
TTGAAATGCCGTGAGTTCCAGATCACCCGCCGTGAAGAGAAACCGAACAG
A
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1261:265133..265633-

>mRNA_F-serratus_M_contig1261.1984.1 ID=mRNA_F-serratus_M_contig1261.1984.1|Name=mRNA_F-serratus_M_contig1261.1984.1|organism=Fucus serratus male|type=CDS|length=1002bp|location=Sequence derived from alignment at F-serratus_M_contig1261:265133..265633- (Fucus serratus male)
GTGAATGCGGAAAAATTAGCCAGCGAAGCATGGGCCAAACCCGTACAGCA
CTACCAGGCCAGTGGACTCAAGGAGCGCCGACGTCTCACCCTTGTTTTTT
ACACGACAAAGATGGAGCTCGGAGAACATCCGAGGAAGTTCCTGCTTTGC
ATGGATCAAATGGTGAAGGAACTGGAGCGAGTGGACCGGCCCGTGGACCC
AAAGGACATCGACATCGTCATTCTAAGTGGACTTACGCCGCAGTACGACG
CCGAAGTTCGCATGCTAGAGAGCTCATCGGATTGGCCCACGCGGGAATGG
GTCGAGCGTGCTGTGATAAACCAGTACGAGCGGCTGGAAAGCGAGAAATC
TTCCGCCGGGAGCAGGGCGATGTTGTCCACACGCGGCCACCGCCGCAACG
ATACACCCCCCACCCGATGCCTCCTTTGTTCCCGCACAGAACACTCTGCC
TTGAAATGCCGTGAGTTCCAGATCACCCGCCGTGAAGAGAAACCGAACAG
AGTGAATGCGGAAAAATTAGCCAGCGAAGCATGGGCCAAACCCGTACAGC
ACTACCAGGCCAGTGGACTCAAGGAGCGCCGACGTCTCACCCTTGTTTTT
TACACGACAAAGATGGAGCTCGGAGAACATCCGAGGAAGTTCCTGCTTTG
CATGGATCAAATGGTGAAGGAACTGGAGCGAGTGGACCGGCCCGTGGACC
CAAAGGACATCGACATCGTCATTCTAAGTGGACTTACGCCGCAGTACGAC
GCCGAAGTTCGCATGCTAGAGAGCTCATCGGATTGGCCCACGCGGGAATG
GGTCGAGCGTGCTGTGATAAACCAGTACGAGCGGCTGGAAAGCGAGAAAT
CTTCCGCCGGGAGCAGGGCGATGTTGTCCACACGCGGCCACCGCCGCAAC
GATACACCCCCCACCCGATGCCTCCTTTGTTCCCGCACAGAACACTCTGC
CTTGAAATGCCGTGAGTTCCAGATCACCCGCCGTGAAGAGAAACCGAACA
GA
back to top